Rice Haplotype Map Project Database
(Second Generation)
Home | Genotype Dataset | SNP Information | Assembly and Variants | GBrowse | Blast | Software

National Center for Gene Research, CAS

Assembly and Variants

Here we provide local assembly sequences for Chinese landraces. A haplotype-based local sequence assembly method was used in the assembly process, which combines sequencing reads of a common haplotype in a local region to perform de novo assembly.

1. The local assembly sequences

A total of 179,300 sequences, Assembly.chrAll.seq.gz download(67.25M)

2. Complex variant dataset

A total of 191,476 Non-redundant InDels in genic regions, VariantsVsRef.chrAll.NR.InDel.gz download(2.87M)

A total of 660,909 Non-redundant SNPs in genic regions, VariantsVsRef.chrAll.NR.SNP download(5.26M)

3. BLAST searching

Rice HapMap Project (RHP) Copyright@ncgr.ac.cn
Please send questions and comments on website to lzhang@ncgr.ac.cn
Maintained by lzhang@ncgr.ac.cn
Welcome, you are the 22000 th vistor!