BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst039d07 (1348 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001056953.1| Oryza sativa (japonica cultivar-group) Os03g... 674 0.0 dbj|AK060233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 674 0.0 gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genom... 289 1e-74 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 289 1e-74 gb|DQ428424.1| Sorghum bicolor voucher PI585454 locus PRC1046 ge... 180 1e-41 >ref|NM_001056953.1| Oryza sativa (japonica cultivar-group) Os03g0428800 (Os03g0428800) mRNA, partial cds Length = 894 Score = 674 bits (340), Expect = 0.0 Identities = 529/592 (89%) Strand = Plus / Plus Query: 428 agcgcgagcgcgtccgccgcgagctacaaaaggtggcgaaggagcaagcagagcggaggg 487 ||||||||||||||||||||||||| || |||||||| ||||||||||||||| || ||| Sbjct: 1 agcgcgagcgcgtccgccgcgagctccagaaggtggcaaaggagcaagcagagaggcggg 60 Query: 488 agacggcgaagcaaatgtttgaattggggcaaagggcgtacggaaaagggatgtacggcc 547 ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |||| Sbjct: 61 cgacggcgaagcaaatgtttgatttggggcaaagggcctacggaagaggaatgtatggcc 120 Query: 548 gctccatcgaattcttggaggctgcactcactatcatacgcccctcctcactgcttggtg 607 |||| || ||||||||||||||||||||||| || || ||||| || || || ||||||| Sbjct: 121 gctctattgaattcttggaggctgcactcacaattattcgcccttcatcgctccttggtg 180 Query: 608 gtgagatccaaatttggcttgcaatggcatatgaggccaataggcggcacaaggattgca 667 | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 181 gggagatccaaatttggcttgcaatggcgtatgaggccaataggaggcacaaggattgca 240 Query: 668 ttgcactgtacaaagagttggagagtacccatccaatgattaaaatccggcggcaggcag 727 |||||||||||||||||||||||||||| ||||||||||| | || |||||||||||| Sbjct: 241 ttgcactgtacaaagagttggagagtacacatccaatgatcagcattaggcggcaggcag 300 Query: 728 ctgaactccggtacattttggaggcacccaagttgaagatctccaatgatgaggtggtca 787 | |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| Sbjct: 301 cggaactccggtacatttctgaggcacccaagctgaagatctccaatgacgaggtggtca 360 Query: 788 caataccacagattggatccagctgggattggtatgctggaacatggagtgacaaaatca 847 |||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct: 361 caataccacaaattggatctagttgggattggtacgctggaacatggagtgacaaaatca 420 Query: 848 aggatcaagaagacaagaaaaggaagatggctgctgccagcagccaagatcaaccttcga 907 |||| || || |||||||||||||| |||| |||||||||||||||| | |||||||| Sbjct: 421 aggagcaggaggacaagaaaaggaaaatggtggctgccagcagccaagttgaaccttcgc 480 Query: 908 caaacgtctttggtgacttctattttttgcgaccaccaagtgaatggaagaagagcgcct 967 |||| ||||||||||||| | ||| |||||||| |||| ||||||| | |||||| | Sbjct: 481 caaatatctttggtgacttatctttcttgcgacctccaacggaatggacaaggagcgcat 540 Query: 968 gggtgattgttactttatggatccttttgattggaacagcgatctatctgca 1019 |||||||||||||||||||||| |||||||||||||||| |||||| |||| Sbjct: 541 gggtgattgttactttatggattgttttgattggaacagcaatctatttgca 592 >dbj|AK060233.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A11, full insert sequence Length = 894 Score = 674 bits (340), Expect = 0.0 Identities = 529/592 (89%) Strand = Plus / Plus Query: 428 agcgcgagcgcgtccgccgcgagctacaaaaggtggcgaaggagcaagcagagcggaggg 487 ||||||||||||||||||||||||| || |||||||| ||||||||||||||| || ||| Sbjct: 1 agcgcgagcgcgtccgccgcgagctccagaaggtggcaaaggagcaagcagagaggcggg 60 Query: 488 agacggcgaagcaaatgtttgaattggggcaaagggcgtacggaaaagggatgtacggcc 547 ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |||| Sbjct: 61 cgacggcgaagcaaatgtttgatttggggcaaagggcctacggaagaggaatgtatggcc 120 Query: 548 gctccatcgaattcttggaggctgcactcactatcatacgcccctcctcactgcttggtg 607 |||| || ||||||||||||||||||||||| || || ||||| || || || ||||||| Sbjct: 121 gctctattgaattcttggaggctgcactcacaattattcgcccttcatcgctccttggtg 180 Query: 608 gtgagatccaaatttggcttgcaatggcatatgaggccaataggcggcacaaggattgca 667 | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 181 gggagatccaaatttggcttgcaatggcgtatgaggccaataggaggcacaaggattgca 240 Query: 668 ttgcactgtacaaagagttggagagtacccatccaatgattaaaatccggcggcaggcag 727 |||||||||||||||||||||||||||| ||||||||||| | || |||||||||||| Sbjct: 241 ttgcactgtacaaagagttggagagtacacatccaatgatcagcattaggcggcaggcag 300 Query: 728 ctgaactccggtacattttggaggcacccaagttgaagatctccaatgatgaggtggtca 787 | |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| Sbjct: 301 cggaactccggtacatttctgaggcacccaagctgaagatctccaatgacgaggtggtca 360 Query: 788 caataccacagattggatccagctgggattggtatgctggaacatggagtgacaaaatca 847 |||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct: 361 caataccacaaattggatctagttgggattggtacgctggaacatggagtgacaaaatca 420 Query: 848 aggatcaagaagacaagaaaaggaagatggctgctgccagcagccaagatcaaccttcga 907 |||| || || |||||||||||||| |||| |||||||||||||||| | |||||||| Sbjct: 421 aggagcaggaggacaagaaaaggaaaatggtggctgccagcagccaagttgaaccttcgc 480 Query: 908 caaacgtctttggtgacttctattttttgcgaccaccaagtgaatggaagaagagcgcct 967 |||| ||||||||||||| | ||| |||||||| |||| ||||||| | |||||| | Sbjct: 481 caaatatctttggtgacttatctttcttgcgacctccaacggaatggacaaggagcgcat 540 Query: 968 gggtgattgttactttatggatccttttgattggaacagcgatctatctgca 1019 |||||||||||||||||||||| |||||||||||||||| |||||| |||| Sbjct: 541 gggtgattgttactttatggattgttttgattggaacagcaatctatttgca 592 >gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete sequence Length = 136916 Score = 289 bits (146), Expect = 1e-74 Identities = 194/210 (92%) Strand = Plus / Minus Query: 611 agatccaaatttggcttgcaatggcatatgaggccaataggcggcacaaggattgcattg 670 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 30243 agatccaaatttggcttgcaatggcgtatgaggccaataggaggcacaaggattgcattg 30184 Query: 671 cactgtacaaagagttggagagtacccatccaatgattaaaatccggcggcaggcagctg 730 ||||||||||||||||||||||||| ||||||||||| | || ||||||||||||| | Sbjct: 30183 cactgtacaaagagttggagagtacacatccaatgatcagcattaggcggcaggcagcgg 30124 Query: 731 aactccggtacattttggaggcacccaagttgaagatctccaatgatgaggtggtcacaa 790 ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 30123 aactccggtacatttctgaggcacccaagctgaagatctccaatgacgaggtggtcacaa 30064 Query: 791 taccacagattggatccagctgggattggt 820 ||||||| |||||||| || |||||||||| Sbjct: 30063 taccacaaattggatctagttgggattggt 30034 Score = 278 bits (140), Expect = 6e-71 Identities = 217/242 (89%), Gaps = 3/242 (1%) Strand = Plus / Minus Query: 223 ggccatgtggccaggttcgccgcctccgcttcggg---cggcggcgaggacccgggggag 279 ||||||||||||||||| || || ||||||||||| |||||||||||| | |||||| Sbjct: 31898 ggccatgtggccaggtttgcggcgtccgcttcgggggccggcggcgaggaggccggggag 31839 Query: 280 ctgtcggaggatgatgcgcagagggagcgggaggaggagatgacgcggcggttgaaggag 339 | ||||||||| || |||||||||||| |||||| ||||||| |||||||| |||||||| Sbjct: 31838 ccgtcggaggacgaggcgcagagggagtgggaggcggagatggcgcggcggctgaaggag 31779 Query: 340 gcggaggagatgcaggacctggagcgcacggcggaggagctgcagagccaggccgccgcc 399 || ||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| Sbjct: 31778 gccgaggagatggaggagctcgagcgcaccgccgaggagctgcagagccaggccgccgcc 31719 Query: 400 gaggcccccgaggagtccgaggaggagaagcgcgagcgcgtccgccgcgagctacaaaag 459 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 31718 gaggcccccgacgagtccgaggaggagaagcgcgagcgcgtccgccgcgagctccagaag 31659 Query: 460 gt 461 || Sbjct: 31658 gt 31657 Score = 194 bits (98), Expect = 6e-46 Identities = 176/202 (87%) Strand = Plus / Minus Query: 818 ggtatgctggaacatggagtgacaaaatcaaggatcaagaagacaagaaaaggaagatgg 877 |||| ||||||||||||||||||||||||||||| || || |||||||||||||| |||| Sbjct: 29797 ggtacgctggaacatggagtgacaaaatcaaggagcaggaggacaagaaaaggaaaatgg 29738 Query: 878 ctgctgccagcagccaagatcaaccttcgacaaacgtctttggtgacttctattttttgc 937 |||||||||||||||| | |||||||| |||| ||||||||||||| | ||| |||| Sbjct: 29737 tggctgccagcagccaagttgaaccttcgccaaatatctttggtgacttatctttcttgc 29678 Query: 938 gaccaccaagtgaatggaagaagagcgcctgggtgattgttactttatggatccttttga 997 |||| |||| ||||||| | |||||| ||||||||||||||||||||||| |||||| Sbjct: 29677 gacctccaacggaatggacaaggagcgcatgggtgattgttactttatggattgttttga 29618 Query: 998 ttggaacagcgatctatctgca 1019 |||||||||| |||||| |||| Sbjct: 29617 ttggaacagcaatctatttgca 29596 Score = 157 bits (79), Expect = 1e-34 Identities = 133/151 (88%) Strand = Plus / Minus Query: 458 aggtggcgaaggagcaagcagagcggagggagacggcgaagcaaatgtttgaattggggc 517 ||||||| ||||||||||||||| || ||| ||||||||||||||||||||| ||||||| Sbjct: 31430 aggtggcaaaggagcaagcagagaggcgggcgacggcgaagcaaatgtttgatttggggc 31371 Query: 518 aaagggcgtacggaaaagggatgtacggccgctccatcgaattcttggaggctgcactca 577 ||||||| ||||||| ||| ||||| |||||||| || |||||||||||||||||||||| Sbjct: 31370 aaagggcctacggaagaggaatgtatggccgctctattgaattcttggaggctgcactca 31311 Query: 578 ctatcatacgcccctcctcactgcttggtgg 608 | || || ||||| || || || |||||||| Sbjct: 31310 caattattcgcccttcatcgctccttggtgg 31280 Score = 117 bits (59), Expect = 1e-22 Identities = 95/107 (88%) Strand = Plus / Minus Query: 66 cgcggcgatggccgccggcctcctcctcggcgacgccaccgccccgcggtcccacctcac 125 |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| Sbjct: 32082 cgcggcgatggccgccggcctcctcctcggcgacgccaccgccctgcggggcgacctcac 32023 Query: 126 ggtatgccggcctcacctccgcctctgcaactggacccccaagcccc 172 || || |||| || |||||||||||||||||| |||||| ||||| Sbjct: 32022 cgtccgcgggccccagctccgcctctgcaactgggcccccaggcccc 31976 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 289 bits (146), Expect = 1e-74 Identities = 194/210 (92%) Strand = Plus / Plus Query: 611 agatccaaatttggcttgcaatggcatatgaggccaataggcggcacaaggattgcattg 670 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 17747305 agatccaaatttggcttgcaatggcgtatgaggccaataggaggcacaaggattgcattg 17747364 Query: 671 cactgtacaaagagttggagagtacccatccaatgattaaaatccggcggcaggcagctg 730 ||||||||||||||||||||||||| ||||||||||| | || ||||||||||||| | Sbjct: 17747365 cactgtacaaagagttggagagtacacatccaatgatcagcattaggcggcaggcagcgg 17747424 Query: 731 aactccggtacattttggaggcacccaagttgaagatctccaatgatgaggtggtcacaa 790 ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 17747425 aactccggtacatttctgaggcacccaagctgaagatctccaatgacgaggtggtcacaa 17747484 Query: 791 taccacagattggatccagctgggattggt 820 ||||||| |||||||| || |||||||||| Sbjct: 17747485 taccacaaattggatctagttgggattggt 17747514 Score = 278 bits (140), Expect = 6e-71 Identities = 217/242 (89%), Gaps = 3/242 (1%) Strand = Plus / Plus Query: 223 ggccatgtggccaggttcgccgcctccgcttcggg---cggcggcgaggacccgggggag 279 ||||||||||||||||| || || ||||||||||| |||||||||||| | |||||| Sbjct: 17745650 ggccatgtggccaggtttgcggcgtccgcttcgggggccggcggcgaggaggccggggag 17745709 Query: 280 ctgtcggaggatgatgcgcagagggagcgggaggaggagatgacgcggcggttgaaggag 339 | ||||||||| || |||||||||||| |||||| ||||||| |||||||| |||||||| Sbjct: 17745710 ccgtcggaggacgaggcgcagagggagtgggaggcggagatggcgcggcggctgaaggag 17745769 Query: 340 gcggaggagatgcaggacctggagcgcacggcggaggagctgcagagccaggccgccgcc 399 || ||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| Sbjct: 17745770 gccgaggagatggaggagctcgagcgcaccgccgaggagctgcagagccaggccgccgcc 17745829 Query: 400 gaggcccccgaggagtccgaggaggagaagcgcgagcgcgtccgccgcgagctacaaaag 459 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 17745830 gaggcccccgacgagtccgaggaggagaagcgcgagcgcgtccgccgcgagctccagaag 17745889 Query: 460 gt 461 || Sbjct: 17745890 gt 17745891 Score = 194 bits (98), Expect = 6e-46 Identities = 176/202 (87%) Strand = Plus / Plus Query: 818 ggtatgctggaacatggagtgacaaaatcaaggatcaagaagacaagaaaaggaagatgg 877 |||| ||||||||||||||||||||||||||||| || || |||||||||||||| |||| Sbjct: 17747751 ggtacgctggaacatggagtgacaaaatcaaggagcaggaggacaagaaaaggaaaatgg 17747810 Query: 878 ctgctgccagcagccaagatcaaccttcgacaaacgtctttggtgacttctattttttgc 937 |||||||||||||||| | |||||||| |||| ||||||||||||| | ||| |||| Sbjct: 17747811 tggctgccagcagccaagttgaaccttcgccaaatatctttggtgacttatctttcttgc 17747870 Query: 938 gaccaccaagtgaatggaagaagagcgcctgggtgattgttactttatggatccttttga 997 |||| |||| ||||||| | |||||| ||||||||||||||||||||||| |||||| Sbjct: 17747871 gacctccaacggaatggacaaggagcgcatgggtgattgttactttatggattgttttga 17747930 Query: 998 ttggaacagcgatctatctgca 1019 |||||||||| |||||| |||| Sbjct: 17747931 ttggaacagcaatctatttgca 17747952 Score = 157 bits (79), Expect = 1e-34 Identities = 133/151 (88%) Strand = Plus / Plus Query: 458 aggtggcgaaggagcaagcagagcggagggagacggcgaagcaaatgtttgaattggggc 517 ||||||| ||||||||||||||| || ||| ||||||||||||||||||||| ||||||| Sbjct: 17746118 aggtggcaaaggagcaagcagagaggcgggcgacggcgaagcaaatgtttgatttggggc 17746177 Query: 518 aaagggcgtacggaaaagggatgtacggccgctccatcgaattcttggaggctgcactca 577 ||||||| ||||||| ||| ||||| |||||||| || |||||||||||||||||||||| Sbjct: 17746178 aaagggcctacggaagaggaatgtatggccgctctattgaattcttggaggctgcactca 17746237 Query: 578 ctatcatacgcccctcctcactgcttggtgg 608 | || || ||||| || || || |||||||| Sbjct: 17746238 caattattcgcccttcatcgctccttggtgg 17746268 Score = 117 bits (59), Expect = 1e-22 Identities = 95/107 (88%) Strand = Plus / Plus Query: 66 cgcggcgatggccgccggcctcctcctcggcgacgccaccgccccgcggtcccacctcac 125 |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| Sbjct: 17745466 cgcggcgatggccgccggcctcctcctcggcgacgccaccgccctgcggggcgacctcac 17745525 Query: 126 ggtatgccggcctcacctccgcctctgcaactggacccccaagcccc 172 || || |||| || |||||||||||||||||| |||||| ||||| Sbjct: 17745526 cgtccgcgggccccagctccgcctctgcaactgggcccccaggcccc 17745572 >gb|DQ428424.1| Sorghum bicolor voucher PI585454 locus PRC1046 genomic sequence Length = 710 Score = 180 bits (91), Expect = 1e-41 Identities = 127/139 (91%) Strand = Plus / Plus Query: 458 aggtggcgaaggagcaagcagagcggagggagacggcgaagcaaatgtttgaattggggc 517 |||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct: 149 aggtggcgaaggagcaggcggaaaggagggagacggcgaagcaaatgtttgaattggggc 208 Query: 518 aaagggcgtacggaaaagggatgtacggccgctccatcgaattcttggaggctgcactca 577 ||||||| ||||| ||||| ||||| || ||||| || |||||||||||||||||||||| Sbjct: 209 aaagggcctacgggaaaggaatgtatggacgctcaattgaattcttggaggctgcactca 268 Query: 578 ctatcatacgcccctcctc 596 |||||||||| |||||||| Sbjct: 269 ctatcatacgtccctcctc 287