BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst036n19 (961 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001058596.1| Oryza sativa (japonica cultivar-group) Os04g... 577 e-161 dbj|AK102071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 577 e-161 gb|DQ246007.1| Zea mays clone 94519 mRNA sequence 339 1e-89 gb|AY620405.1| Zea mays arginine/serine-rich splicing factor 1 v... 339 1e-89 gb|AY620404.1| Zea mays arginine/serine-rich splicing factor 1 v... 339 1e-89 >ref|NM_001058596.1| Oryza sativa (japonica cultivar-group) Os04g0118900 (Os04g0118900) mRNA, complete cds Length = 1070 Score = 577 bits (291), Expect = e-161 Identities = 555/642 (86%), Gaps = 12/642 (1%) Strand = Plus / Plus Query: 132 aggatttgcttttgtctactttgaggatgagcgtgatggtgatgatgccatacggtctct 191 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct: 217 aggatttgcttttgtctactttgaggatgagcgtgatggtgatgaggccatacgagccct 276 Query: 192 tgatggctatccctttggccctgggaggcgcaggctttcggtggagtggtcacggggtga 251 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 tgatggctatccttttggccctgggaggcgcaggctttcggtggagtggtcacggggtga 336 Query: 252 tcgcggttccagaagcgatgccaacaataaaccagcagcgaatactaagcccactaagac 311 ||| |||||||| | |||| | | | |||||| | | ||||||||| ||||| ||||| Sbjct: 337 tcgtggttccaggcgtgatggctatagcaaaccacctgtgaatactaaacccacgaagac 396 Query: 312 attgtttgtcattaactttgaccccatcgacacaaaagtcagtgatattgaaaggcattt 371 | | |||||||||||||||||||||||| |||| | ||||| |||||| ||||||||||| Sbjct: 397 actatttgtcattaactttgaccccatcaacaccagagtcactgatatcgaaaggcattt 456 Query: 372 tggaccatttgggaagatttcaaacgttcggataaggaggaactttgcgtttgtgcagtt 431 | ||||||||| ||| |||| || |||||||| |||||||||||||| ||||||||||| Sbjct: 457 cgaaccatttggaaagctttcgaatgttcggatcaggaggaactttgcttttgtgcagtt 516 Query: 432 tgaaacacaggaagaagccacaaaagcccttgaagctactcattctacgaagatattgga 491 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||| Sbjct: 517 tgaaacacaggaagaggccacaaaagcacttgaagctactcattctaccaagttgttgga 576 Query: 492 cagggtgatttctgttgagtatgcttttagggatgatactggacgaggtgacaggtatga 551 |||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct: 577 cagggtgatttctgttgagtatgccttcagggatgatacagaacgaggtgacaggtatga 636 Query: 552 cagccctagaagaggtggttatggtaggcgggatgatagtccatatcgccgatctgttag 611 | | ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 637 tgg---tgcaagaggtggctatggtaggcgagatgatagtccatatcgtcgatcagttag 693 Query: 612 cccagtgtaccaaaggtcacggccgagccccgactatggtcgtccgcgcagtcctgctta 671 ||||||||| |||||||| || || || ||||| ||||||| | ||||||| || Sbjct: 694 tccagtgtac---aggtcacgcccaagtcctgactacggtcgtcaaaggagtcctgtgta 750 Query: 672 tggttcatatgacaggagcaggagtcctgttcgcgatcgctatcggagccgatctcctgt 731 ||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| Sbjct: 751 cggttcgtatga------caggagtcctgttaatgatcgctatcgaagccgatctcctgt 804 Query: 732 cccgcgagcaagatccccacctaccaatagaagagcatatga 773 || |||| |||||||||||| | |||| |||||||| ||||| Sbjct: 805 ccggcgatcaagatccccacttgccaacagaagagcttatga 846 >dbj|AK102071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082G11, full insert sequence Length = 1072 Score = 577 bits (291), Expect = e-161 Identities = 555/642 (86%), Gaps = 12/642 (1%) Strand = Plus / Plus Query: 132 aggatttgcttttgtctactttgaggatgagcgtgatggtgatgatgccatacggtctct 191 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct: 219 aggatttgcttttgtctactttgaggatgagcgtgatggtgatgaggccatacgagccct 278 Query: 192 tgatggctatccctttggccctgggaggcgcaggctttcggtggagtggtcacggggtga 251 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 tgatggctatccttttggccctgggaggcgcaggctttcggtggagtggtcacggggtga 338 Query: 252 tcgcggttccagaagcgatgccaacaataaaccagcagcgaatactaagcccactaagac 311 ||| |||||||| | |||| | | | |||||| | | ||||||||| ||||| ||||| Sbjct: 339 tcgtggttccaggcgtgatggctatagcaaaccacctgtgaatactaaacccacgaagac 398 Query: 312 attgtttgtcattaactttgaccccatcgacacaaaagtcagtgatattgaaaggcattt 371 | | |||||||||||||||||||||||| |||| | ||||| |||||| ||||||||||| Sbjct: 399 actatttgtcattaactttgaccccatcaacaccagagtcactgatatcgaaaggcattt 458 Query: 372 tggaccatttgggaagatttcaaacgttcggataaggaggaactttgcgtttgtgcagtt 431 | ||||||||| ||| |||| || |||||||| |||||||||||||| ||||||||||| Sbjct: 459 cgaaccatttggaaagctttcgaatgttcggatcaggaggaactttgcttttgtgcagtt 518 Query: 432 tgaaacacaggaagaagccacaaaagcccttgaagctactcattctacgaagatattgga 491 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||| Sbjct: 519 tgaaacacaggaagaggccacaaaagcacttgaagctactcattctaccaagttgttgga 578 Query: 492 cagggtgatttctgttgagtatgcttttagggatgatactggacgaggtgacaggtatga 551 |||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct: 579 cagggtgatttctgttgagtatgccttcagggatgatacagaacgaggtgacaggtatga 638 Query: 552 cagccctagaagaggtggttatggtaggcgggatgatagtccatatcgccgatctgttag 611 | | ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 639 tgg---tgcaagaggtggctatggtaggcgagatgatagtccatatcgtcgatcagttag 695 Query: 612 cccagtgtaccaaaggtcacggccgagccccgactatggtcgtccgcgcagtcctgctta 671 ||||||||| |||||||| || || || ||||| ||||||| | ||||||| || Sbjct: 696 tccagtgtac---aggtcacgcccaagtcctgactacggtcgtcaaaggagtcctgtgta 752 Query: 672 tggttcatatgacaggagcaggagtcctgttcgcgatcgctatcggagccgatctcctgt 731 ||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| Sbjct: 753 cggttcgtatga------caggagtcctgttaatgatcgctatcgaagccgatctcctgt 806 Query: 732 cccgcgagcaagatccccacctaccaatagaagagcatatga 773 || |||| |||||||||||| | |||| |||||||| ||||| Sbjct: 807 ccggcgatcaagatccccacttgccaacagaagagcttatga 848 >gb|DQ246007.1| Zea mays clone 94519 mRNA sequence Length = 1113 Score = 339 bits (171), Expect = 1e-89 Identities = 382/451 (84%), Gaps = 6/451 (1%) Strand = Plus / Plus Query: 136 tttgcttttgtctactttgaggatgagcgtgatggtgatgatgccatacggtctcttgat 195 |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| Sbjct: 263 tttgcttttgtctactttgaggatgaacgtgatggcagtgatgccatacgtgctcttgat 322 Query: 196 ggctatccctttggccctgggaggcgcaggctttcggtggagtggtcacggggtgatcgc 255 || ||||| ||||||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 323 ggttatccatttggccctggcagacgcaggctttcagtagagtggtcacggggtgatcga 382 Query: 256 ggttccagaagcgatgccaacaataaaccagcagcgaatactaagcccactaagacattg 315 | | | ||| | |||| |||||| ||||| || ||||||||||| ||||| |||||| Sbjct: 383 gctgctagacgtgatggcaacaa---accagaagtaaatactaagccaactaaaacattg 439 Query: 316 tttgtcattaactttgaccccatcgacacaaaagtcagtgatattgaaaggcattttgga 375 ||||||||||||||||| || || ||||||| |||||||||||| ||||| || |||| | Sbjct: 440 tttgtcattaactttgatccaatggacacaagagtcagtgatatcgaaagacactttgca 499 Query: 376 ccatttgggaagatttcaaacgttcggataaggaggaactttgcgtttgtgcagtttgaa 435 ||||||||||| || |||| ||| ||||||||| ||||||||| ||||| | ||||||| Sbjct: 500 ccatttgggaacatatcaagtgttaggataaggaagaactttgcttttgtccggtttgaa 559 Query: 436 acacaggaagaagccacaaaagcccttgaagctactcattctacgaagatattggacagg 495 |||| ||||||||| || || ||||||||||||||| |||| | | | ||||| ||| Sbjct: 560 acactagaagaagcccgtaaggctcttgaagctactcatgctaccatgcttttggatagg 619 Query: 496 gtgatttctgttgagtatgcttttagggatgatactggacgaggtgacaggtatgacagc 555 |||||||||||||||||||| |||||||||||| || ||| |||| ||||| |||||| Sbjct: 620 gtgatttctgttgagtatgcctttagggatgatgatgaacggagtgataggtacgacagc 679 Query: 556 cctagaagaggtggt---tatggtaggcggg 583 || |||||||||||| ||||||||||||| Sbjct: 680 ccaagaagaggtggtggatatggtaggcggg 710 >gb|AY620405.1| Zea mays arginine/serine-rich splicing factor 1 variant 3 mRNA, complete cds, alternatively spliced Length = 1144 Score = 339 bits (171), Expect = 1e-89 Identities = 382/451 (84%), Gaps = 6/451 (1%) Strand = Plus / Plus Query: 136 tttgcttttgtctactttgaggatgagcgtgatggtgatgatgccatacggtctcttgat 195 |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| Sbjct: 492 tttgcttttgtctactttgaggatgaacgtgatggcagtgatgccatacgtgctcttgat 551 Query: 196 ggctatccctttggccctgggaggcgcaggctttcggtggagtggtcacggggtgatcgc 255 || ||||| ||||||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 552 ggttatccatttggccctggcagacgcaggctttcagtagagtggtcacggggtgatcga 611 Query: 256 ggttccagaagcgatgccaacaataaaccagcagcgaatactaagcccactaagacattg 315 | | | ||| | |||| |||||| ||||| || ||||||||||| ||||| |||||| Sbjct: 612 gctgctagacgtgatggcaacaa---accagaagtaaatactaagccaactaaaacattg 668 Query: 316 tttgtcattaactttgaccccatcgacacaaaagtcagtgatattgaaaggcattttgga 375 ||||||||||||||||| || || ||||||| |||||||||||| ||||| || |||| | Sbjct: 669 tttgtcattaactttgatccaatggacacaagagtcagtgatatcgaaagacactttgca 728 Query: 376 ccatttgggaagatttcaaacgttcggataaggaggaactttgcgtttgtgcagtttgaa 435 ||||||||||| || |||| ||| ||||||||| ||||||||| ||||| | ||||||| Sbjct: 729 ccatttgggaacatatcaagtgttaggataaggaagaactttgcttttgtccggtttgaa 788 Query: 436 acacaggaagaagccacaaaagcccttgaagctactcattctacgaagatattggacagg 495 |||| ||||||||| || || ||||||||||||||| |||| | | | ||||| ||| Sbjct: 789 acactagaagaagcccgtaaggctcttgaagctactcatgctaccatgcttttggatagg 848 Query: 496 gtgatttctgttgagtatgcttttagggatgatactggacgaggtgacaggtatgacagc 555 |||||||||||||||||||| |||||||||||| || ||| |||| ||||| |||||| Sbjct: 849 gtgatttctgttgagtatgcctttagggatgatgatgaacggagtgataggtacgacagc 908 Query: 556 cctagaagaggtggt---tatggtaggcggg 583 || |||||||||||| ||||||||||||| Sbjct: 909 ccaagaagaggtggtggatatggtaggcggg 939 >gb|AY620404.1| Zea mays arginine/serine-rich splicing factor 1 variant 2 mRNA, complete cds, alternatively spliced Length = 1243 Score = 339 bits (171), Expect = 1e-89 Identities = 382/451 (84%), Gaps = 6/451 (1%) Strand = Plus / Plus Query: 136 tttgcttttgtctactttgaggatgagcgtgatggtgatgatgccatacggtctcttgat 195 |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| Sbjct: 591 tttgcttttgtctactttgaggatgaacgtgatggcagtgatgccatacgtgctcttgat 650 Query: 196 ggctatccctttggccctgggaggcgcaggctttcggtggagtggtcacggggtgatcgc 255 || ||||| ||||||||||| || ||||||||||| || |||||||||||||||||||| Sbjct: 651 ggttatccatttggccctggcagacgcaggctttcagtagagtggtcacggggtgatcga 710 Query: 256 ggttccagaagcgatgccaacaataaaccagcagcgaatactaagcccactaagacattg 315 | | | ||| | |||| |||||| ||||| || ||||||||||| ||||| |||||| Sbjct: 711 gctgctagacgtgatggcaacaa---accagaagtaaatactaagccaactaaaacattg 767 Query: 316 tttgtcattaactttgaccccatcgacacaaaagtcagtgatattgaaaggcattttgga 375 ||||||||||||||||| || || ||||||| |||||||||||| ||||| || |||| | Sbjct: 768 tttgtcattaactttgatccaatggacacaagagtcagtgatatcgaaagacactttgca 827 Query: 376 ccatttgggaagatttcaaacgttcggataaggaggaactttgcgtttgtgcagtttgaa 435 ||||||||||| || |||| ||| ||||||||| ||||||||| ||||| | ||||||| Sbjct: 828 ccatttgggaacatatcaagtgttaggataaggaagaactttgcttttgtccggtttgaa 887 Query: 436 acacaggaagaagccacaaaagcccttgaagctactcattctacgaagatattggacagg 495 |||| ||||||||| || || ||||||||||||||| |||| | | | ||||| ||| Sbjct: 888 acactagaagaagcccgtaaggctcttgaagctactcatgctaccatgcttttggatagg 947 Query: 496 gtgatttctgttgagtatgcttttagggatgatactggacgaggtgacaggtatgacagc 555 |||||||||||||||||||| |||||||||||| || ||| |||| ||||| |||||| Sbjct: 948 gtgatttctgttgagtatgcctttagggatgatgatgaacggagtgataggtacgacagc 1007 Query: 556 cctagaagaggtggt---tatggtaggcggg 583 || |||||||||||| ||||||||||||| Sbjct: 1008 ccaagaagaggtggtggatatggtaggcggg 1038