BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst036m05
         (946 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY230317.1| Triticum aestivum FCA beta-A1 isoform (Fca) mRNA,...   373   e-100
ref|NM_001069136.1| Oryza sativa (japonica cultivar-group) Os09g...   214   5e-52
gb|AY730687.1| Oryza sativa (japonica cultivar-group) FCA (FCA) ...   214   5e-52
gb|AY654584.1| Oryza sativa (japonica cultivar-group) FCA gamma ...   214   5e-52
dbj|AK073225.1| Oryza sativa (japonica cultivar-group) cDNA clon...   214   5e-52

>gb|AY230317.1| Triticum aestivum FCA beta-A1 isoform (Fca) mRNA, partial sequence;
           alternatively spliced
          Length = 875

 Score =  373 bits (188), Expect = e-100
 Identities = 363/416 (87%), Gaps = 4/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 412 ggcggcggaggccgtggagactactcagatcatgttaacagaagcaattatgttaaactt 471
           |||||||||||||||||||||||||||||||||| ||||| |||   |||||||||||||
Sbjct: 309 ggcggcggaggccgtggagactactcagatcatgataacaaaagtggttatgttaaactt 368

                                                                       
Query: 472 tttatcgggtcagttccgaggacagcgactgaagatgatgttcggtctttatttgaggat 531
           ||| | || |||||||| || ||||| | |||||||||||||||  ||||||| ||||||
Sbjct: 369 tttgttggatcagttccaagaacagcaaatgaagatgatgttcgacctttattcgaggat 428

                                                                       
Query: 532 catggagatgttatcgaagtcgctttgatcaaggataggaatactggtgaacagcaaggt 591
           |||||||||||| | ||||| |||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 429 catggagatgttcttgaagttgctttgatcagggataggaaaactggtgaacaacaaggt 488

                                                                       
Query: 592 tctgagagttattaggagcaacaaggttgcatcttctctcagttagatttggcgattgtt 651
           |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct: 489 tctgagag-tattaggagcaacaaggttgcgtcttctctcagttggatttggcggttgtt 547

                                                                       
Query: 652 gattttcgtttcctgcgcttccattctgtttatctcatgtgggttcagtagaagacaaga 711
           || ||| ||||||||||||||| |||||||| | || | |||||| | |||||| |||||
Sbjct: 548 gaattttgtttcctgcgcttccgttctgtttct-tcgtctgggtt-aatagaaggcaaga 605

                                                                       
Query: 712 atggaagcaactaactgttggctgattactgcaatctaactagtctccactctattgcta 771
           | ||||||| |||||| ||||||| |||||| ||||||||||| |||||| ||  |||||
Sbjct: 606 aaggaagcagctaactcttggctggttactgtaatctaactaggctccaccctgctgcta 665

                                                                   
Query: 772 gacaaggcagcagatttggtaccaaaaactttgtttaggttatatcaatcttgtgc 827
            | |||| ||||||||||| || || ||||||||| |||| ||| |||||||||||
Sbjct: 666 cataaggtagcagatttgg-acaaacaactttgttcaggtcatagcaatcttgtgc 720



 Score = 95.6 bits (48), Expect = 3e-16
 Identities = 89/102 (87%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                       
Query: 111 cggcgacccctccggccccgcgggtggctctcgcggcggtggtgacggccgattcgcgcg 170
           |||||||||||||||||||||||| ||| ||||| |||| |  |||||| ||||||| ||
Sbjct: 14  cggcgacccctccggccccgcgggcggcgctcgcagcggcgcggacggcagattcgcacg 73

                                                     
Query: 171 cggcccctcgcgctggtccggagacggcggcgggggtagccc 212
           ||| ||||| |||||||||||   ||||||||||||||||||
Sbjct: 74  cggaccctcacgctggtccgg---cggcggcgggggtagccc 112


>ref|NM_001069136.1| Oryza sativa (japonica cultivar-group) Os09g0123200 (Os09g0123200)
           mRNA, complete cds
          Length = 2214

 Score =  214 bits (108), Expect = 5e-52
 Identities = 156/172 (90%)
 Strand = Plus / Plus

                                                                       
Query: 421 ggccgtggagactactcagatcatgttaacagaagcaattatgttaaactttttatcggg 480
           |||||||| ||| |||||||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct: 60  ggccgtggtgaccactcagatcatgataacagaaacaactatgttaaactttttattggg 119

                                                                       
Query: 481 tcagttccgaggacagcgactgaagatgatgttcggtctttatttgaggatcatggagat 540
           |||||||| |||||||||||||| |||||||| ||  ||||||||||||| |||||||||
Sbjct: 120 tcagttccaaggacagcgactgaggatgatgtacgtcctttatttgaggagcatggagat 179

                                                               
Query: 541 gttatcgaagtcgctttgatcaaggataggaatactggtgaacagcaaggtt 592
           ||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 180 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtt 231


>gb|AY730687.1| Oryza sativa (japonica cultivar-group) FCA (FCA) mRNA, complete cds
          Length = 2527

 Score =  214 bits (108), Expect = 5e-52
 Identities = 156/172 (90%)
 Strand = Plus / Plus

                                                                       
Query: 421 ggccgtggagactactcagatcatgttaacagaagcaattatgttaaactttttatcggg 480
           |||||||| ||| |||||||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct: 374 ggccgtggtgaccactcagatcatgataacagaaacaactatgttaaactttttattggg 433

                                                                       
Query: 481 tcagttccgaggacagcgactgaagatgatgttcggtctttatttgaggatcatggagat 540
           |||||||| |||||||||||||| |||||||| ||  ||||||||||||| |||||||||
Sbjct: 434 tcagttccaaggacagcgactgaggatgatgtacgtcctttatttgaggagcatggagat 493

                                                               
Query: 541 gttatcgaagtcgctttgatcaaggataggaatactggtgaacagcaaggtt 592
           ||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtt 545



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                       
Query: 247 ggtgggggtgggggtgggggcggaggcgacggtggcggaggtggaggcgggaggttccac 306
           |||||||||||||| || ||||  || | ||| |||||||||||||||||||||||||||
Sbjct: 209 ggtgggggtgggggcggcggcgacggtggcggaggcggaggtggaggcgggaggttccac 268

                                              
Query: 307 ccgtaccgtggttcgtctgactactctggcggcgg 341
           |||||||||||  |||| ||| |||| ||||||||
Sbjct: 269 ccgtaccgtggcccgtcggaccactccggcggcgg 303


>gb|AY654584.1| Oryza sativa (japonica cultivar-group) FCA gamma protein (FCA)
           mRNA, complete cds
          Length = 3112

 Score =  214 bits (108), Expect = 5e-52
 Identities = 156/172 (90%)
 Strand = Plus / Plus

                                                                       
Query: 421 ggccgtggagactactcagatcatgttaacagaagcaattatgttaaactttttatcggg 480
           |||||||| ||| |||||||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct: 602 ggccgtggtgaccactcagatcatgataacagaaacaactatgttaaactttttattggg 661

                                                                       
Query: 481 tcagttccgaggacagcgactgaagatgatgttcggtctttatttgaggatcatggagat 540
           |||||||| |||||||||||||| |||||||| ||  ||||||||||||| |||||||||
Sbjct: 662 tcagttccaaggacagcgactgaggatgatgtacgtcctttatttgaggagcatggagat 721

                                                               
Query: 541 gttatcgaagtcgctttgatcaaggataggaatactggtgaacagcaaggtt 592
           ||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 722 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtt 773



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 247 ggtgggggtgggggtgggggcggaggcgacggtggcggaggtggaggcgggaggttccac 306
           |||||||||||||| || ||||  || | ||| |||||||||||||||||||||||||||
Sbjct: 437 ggtgggggtgggggcggcggcgacggtggcggaggcggaggtggaggcgggaggttccac 496

                      
Query: 307 ccgtaccgtgg 317
           |||||||||||
Sbjct: 497 ccgtaccgtgg 507


>dbj|AK073225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023C04, full
           insert sequence
          Length = 2632

 Score =  214 bits (108), Expect = 5e-52
 Identities = 156/172 (90%)
 Strand = Plus / Plus

                                                                       
Query: 421 ggccgtggagactactcagatcatgttaacagaagcaattatgttaaactttttatcggg 480
           |||||||| ||| |||||||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct: 421 ggccgtggtgaccactcagatcatgataacagaaacaactatgttaaactttttattggg 480

                                                                       
Query: 481 tcagttccgaggacagcgactgaagatgatgttcggtctttatttgaggatcatggagat 540
           |||||||| |||||||||||||| |||||||| ||  ||||||||||||| |||||||||
Sbjct: 481 tcagttccaaggacagcgactgaggatgatgtacgtcctttatttgaggagcatggagat 540

                                                               
Query: 541 gttatcgaagtcgctttgatcaaggataggaatactggtgaacagcaaggtt 592
           ||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 541 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtt 592



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                       
Query: 247 ggtgggggtgggggtgggggcggaggcgacggtggcggaggtggaggcgggaggttccac 306
           |||||||||||||| || ||||  || | ||| |||||||||||||||||||||||||||
Sbjct: 256 ggtgggggtgggggcggcggcgacggtggcggaggcggaggtggaggcgggaggttccac 315

                                              
Query: 307 ccgtaccgtggttcgtctgactactctggcggcgg 341
           |||||||||||  |||| ||| |||| ||||||||
Sbjct: 316 ccgtaccgtggcccgtcggaccactccggcggcgg 350