BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst036c03 (977 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AY230321.1| Triticum aestivum FCA beta-A3 isoform (Fca) mRNA,... 404 e-109 gb|AY230318.1| Triticum aestivum FCA beta-A2 isoform (Fca) mRNA,... 404 e-109 gb|AY230320.1| Triticum aestivum FCA beta-B2 isoform (Fca) mRNA,... 400 e-108 gb|AY230319.1| Triticum aestivum FCA beta-B1 isoform (Fca) mRNA,... 392 e-105 emb|CT832023.1| Oryza sativa (indica cultivar-group) cDNA clone:... 379 e-101 >gb|AY230321.1| Triticum aestivum FCA beta-A3 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 781 Score = 404 bits (204), Expect = e-109 Identities = 414/476 (86%), Gaps = 6/476 (1%) Strand = Plus / Plus Query: 426 ggcgccggaggccgtggagactactcagatcatgataacagaagtaattatgttaaacta 485 |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 227 ggcggcggaggccgtggagactactcagatcatgataacaaaagtggttatgttaaactt 286 Query: 486 tttatcgggtcagttccgaggacagctactgaagatgatgttcggcctttattcgaggac 545 ||| | || |||||||| || ||||| | ||||||||||||||| |||||||||||||| Sbjct: 287 tttgttggatcagttccaagaacagcaaatgaagatgatgttcgacctttattcgaggat 346 Query: 546 catggagatgttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggt 605 |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct: 347 catggagatgttcttgaagttgctttgatcagggataggaaaactggtgaacaacaaggt 406 Query: 606 gtgccaaaact-ttttttccttacattatcactatacgtgtatctcttttcttttcaggt 664 | |||| || | | |||| |||| ||||||| ||||| ||||| | ||||||||||||| Sbjct: 407 gagccataagtatatttttcttatattatcaatataccagtatcgc-tttcttttcaggt 465 Query: 665 tctgagagttattaggagcaacaaggttgcatcttctctcagttagatttggcgattgtt 724 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 466 tctgagag-tattaggagcaacaaggttgcgtcttctctcagttagatttggcggttgtt 524 Query: 725 gattttcatttcctgagcttccattctgtttatctcctgtgggttgagtagaagacaaga 784 || ||| ||||||| |||||| |||||||| | || | |||||| | |||||| ||||| Sbjct: 525 gaattttgtttcctgcgcttccgttctgtttct-tcgtctgggtt-aatagaaggcaaga 582 Query: 785 atggaagcaactaactgttggctgattactgcaatctaactagtctacattctactgcta 844 | ||||||| |||||| ||||||| |||||| ||||||||||| || || || |||||| Sbjct: 583 aaggaagcagctaactcttggctggttactgtaatctaactaggctccaccctgctgcta 642 Query: 845 gacaaggcagcagatttggtaccaacaactttgtttaggtcatatcaatcttgtgc 900 | |||| ||||||||||| || |||||||||||| |||||||| ||||||||||| Sbjct: 643 cataaggtagcagatttgg-acaaacaactttgttcaggtcatagcaatcttgtgc 697 Score = 131 bits (66), Expect = 6e-27 Identities = 149/177 (84%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 86 ctagccacctccggccctccacatgcaccgcggcggcgaccgctccggagacccctccgg 145 |||||||||| | |||| |||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 1 ctagccaccttctgcccaccacatgcaccgcggcagcgaccgctccggcgacccctccgg 60 Query: 146 ccccgcgcccggctctcgcggcggcggggacggccgattcgatttcgcgcgcggcccctc 205 ||||||| |||| ||||| |||||| ||||||| || ||||| ||||| ||||| Sbjct: 61 ccccgcgggcggcgctcgcagcggcgcggacggcaga------ttcgcacgcggaccctc 114 Query: 206 gcgctggtccgggggcggcgggggtagtccaccccaccgcttctcctcccgcggcgg 262 ||||||||||| |||||||||||||| || || | || | ||||||||||||||| Sbjct: 115 acgctggtccggcggcggcgggggtagccccccgccccaccgctcctcccgcggcgg 171 >gb|AY230318.1| Triticum aestivum FCA beta-A2 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 964 Score = 404 bits (204), Expect = e-109 Identities = 414/476 (86%), Gaps = 6/476 (1%) Strand = Plus / Plus Query: 426 ggcgccggaggccgtggagactactcagatcatgataacagaagtaattatgttaaacta 485 |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 352 ggcggcggaggccgtggagactactcagatcatgataacaaaagtggttatgttaaactt 411 Query: 486 tttatcgggtcagttccgaggacagctactgaagatgatgttcggcctttattcgaggac 545 ||| | ||||||||||| || ||||| | ||||||||||||||| |||||||||||||| Sbjct: 412 tttgttgggtcagttccaagaacagcaaatgaagatgatgttcgacctttattcgaggat 471 Query: 546 catggagatgttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggt 605 |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct: 472 catggagatgttcttgaagttgctttgatcagggataggaaaactggtgaacaacaaggt 531 Query: 606 gtgccaaaact-ttttttccttacattatcactatacgtgtatctcttttcttttcaggt 664 | |||| || | | |||| |||| ||||||| ||||| ||||| | ||||||||||||| Sbjct: 532 gagccataagtatatttttcttatattatcaatataccagtatcgc-tttcttttcaggt 590 Query: 665 tctgagagttattaggagcaacaaggttgcatcttctctcagttagatttggcgattgtt 724 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 591 tctgagag-tattaggagcaacaaggttgcgtcttctctcagttagatttggcggttgtt 649 Query: 725 gattttcatttcctgagcttccattctgtttatctcctgtgggttgagtagaagacaaga 784 || ||| ||||||| |||||| |||||||| | || | |||||| | |||||| ||||| Sbjct: 650 gaattttgtttcctgcgcttccgttctgtttct-tcgtctgggtt-aatagaaggcaaga 707 Query: 785 atggaagcaactaactgttggctgattactgcaatctaactagtctacattctactgcta 844 | ||||||| |||||| ||||||| |||||| ||||||||||| || || || |||||| Sbjct: 708 aaggaagcagctaactcttggctggttactgtaatctaactaggctccaccctgctgcta 767 Query: 845 gacaaggcagcagatttggtaccaacaactttgtttaggtcatatcaatcttgtgc 900 | |||| |||||| |||| || |||||||||||| |||||||| ||||||||||| Sbjct: 768 cataaggtagcagacttgg-acaaacaactttgttcaggtcatagcaatcttgtgc 822 Score = 147 bits (74), Expect = 1e-31 Identities = 157/185 (84%), Gaps = 6/185 (3%) Strand = Plus / Plus Query: 79 caaaaccctagccacctccggccctccacatgcaccgcggcggcgaccgctccggagacc 138 ||||||||||||||||| | |||| |||||||||||||||| ||||||||||||| |||| Sbjct: 5 caaaaccctagccaccttctgcccaccacatgcaccgcggcagcgaccgctccggcgacc 64 Query: 139 cctccggccccgcgcccggctctcgcggcggcggggacggccgattcgatttcgcgcgcg 198 |||||||||||||| |||| ||||| |||||| ||||||| || ||||| |||| Sbjct: 65 cctccggccccgcgggcggcgctcgcagcggcgcggacggcaga------ttcgcacgcg 118 Query: 199 gcccctcgcgctggtccgggggcggcgggggtagtccaccccaccgcttctcctcccgcg 258 | ||||| ||||||||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 119 gaccctcacgctggtccggcggcggcgggggtagccccccgccccaccgctcctcccgcg 178 Query: 259 gcggg 263 ||||| Sbjct: 179 gcggg 183 >gb|AY230320.1| Triticum aestivum FCA beta-B2 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 943 Score = 400 bits (202), Expect = e-108 Identities = 418/482 (86%), Gaps = 6/482 (1%) Strand = Plus / Plus Query: 420 ggcggtggcgccggaggccgtggagactactcagatcatgataacagaagtaattatgtt 479 |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 308 ggcggtggcggcggagcccgtggagactactcagatcatgataacaaaagtggttatgtt 367 Query: 480 aaactatttatcgggtcagttccgaggacagctactgaagatgatgttcggcctttattc 539 ||||| ||| | || |||||||| || ||||| | ||||||||||||||| ||||||||| Sbjct: 368 aaactttttgttggatcagttccaagaacagcaaatgaagatgatgttcgacctttattc 427 Query: 540 gaggaccatggagatgttgttgaagttgctttgatcaaggataggaagactggtgaacag 599 ||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 428 gaggatcatggagatgttcttgaagttgctttgatcagggataggaaaactggtgaacaa 487 Query: 600 caaggtgtgccaaaact-ttttttccttacattatcactatacgtgtatctcttttcttt 658 ||||||| |||| || | | |||| |||| ||||||| ||||| ||||| | ||||||| Sbjct: 488 caaggtgagccataagtatatttttcttatattatcaatataccagtatcgc-tttcttt 546 Query: 659 tcaggttctgagagttattaggagcaacaaggttgcatcttctctcagttagatttggcg 718 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 tcaggttctgagag-tattaggagcaacaaggttgcatcttctctcagttagatttggcg 605 Query: 719 attgttgattttcatttcctgagcttccattctgtttatctcctgtgggttgagtagaag 778 ||||||| ||| ||||||| |||||| |||||||| | || | |||||| | |||||| Sbjct: 606 gttgttgaattttgtttcctgcgcttccgttctgtttct-tcgtctgggtt-aatagaag 663 Query: 779 acaagaatggaagcaactaactgttggctgattactgcaatctaactagtctacattcta 838 |||||| ||||||| |||||| ||||||| |||||| ||||||||||| || || | Sbjct: 664 gcaagaaaggaagcagctaactcttggctggttactgtaatctaactaggctccaccccg 723 Query: 839 ctgctagacaaggcagcagatttggtaccaacaactttgtttaggtcatatcaatcttgt 898 |||||| | |||| || |||||||| || ||||| ||||||||||||||| ||||||||| Sbjct: 724 ctgctacataaggtagtagatttgg-acaaacaaatttgtttaggtcatagcaatcttgt 782 Query: 899 gc 900 || Sbjct: 783 gc 784 Score = 93.7 bits (47), Expect = 1e-15 Identities = 106/126 (84%), Gaps = 6/126 (4%) Strand = Plus / Plus Query: 107 catgcaccgcggcggcgaccgctccggagacccctccggccccgcgcccggctctcgcgg 166 ||||||||||||| ||||||||||||| |||||| ||||||||||| |||| ||||| | Sbjct: 1 catgcaccgcggcagcgaccgctccggcgacccccccggccccgcgggcggcgctcgcag 60 Query: 167 cggcggggacggccgattcgatttcgcgcgcggcccctcgcgctggtccgggggcggcgg 226 ||||| ||||||| || ||| | ||||| ||||| ||||||||||| |||||||| Sbjct: 61 cggcgcggacggcaga------ttctcacgcggaccctcacgctggtccggcggcggcgg 114 Query: 227 gggtag 232 |||||| Sbjct: 115 gggtag 120 >gb|AY230319.1| Triticum aestivum FCA beta-B1 isoform (Fca) mRNA, partial sequence; alternatively spliced Length = 870 Score = 392 bits (198), Expect = e-105 Identities = 418/482 (86%), Gaps = 7/482 (1%) Strand = Plus / Plus Query: 420 ggcggtggcgccggaggccgtggagactactcagatcatgataacagaagtaattatgtt 479 |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 341 ggcggtggcggcggaggccgtggagactactcagatcatgataacaaaagtggttatgtt 400 Query: 480 aaactatttatcgggtcagttccgaggacagctactgaagatgatgttcggcctttattc 539 ||||| ||| | || |||||||| || ||||| | ||||||||||||||| ||||||||| Sbjct: 401 aaactttttgttggatcagttccaagaacagcaaatgaagatgatgttcgacctttattc 460 Query: 540 gaggaccatggagatgttgttgaagttgctttgatcaaggataggaagactggtgaacag 599 ||||| |||||||||||| |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 461 gaggatcatggagatgttcttgaagttgctttgatcagggataagaaaactggtgaacaa 520 Query: 600 caaggtgtgccaaaact-ttttttccttacattatcactatacgtgtatctcttttcttt 658 ||||||| |||| || | | |||| |||| ||||||| ||||| ||||| | ||||||| Sbjct: 521 caaggtgagccataagtatatttttcttatattatcaatataccagtatcgc-tttcttt 579 Query: 659 tcaggttctgagagttattaggagcaacaaggttgcatcttctctcagttagatttggcg 718 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 tcaggttctgagag-tattaggagcaacaaggttgcatcttctctcagttagatttggcg 638 Query: 719 attgttgattttcatttcctgagcttccattctgtttatctcctgtgggttgagtagaag 778 ||||||| ||| ||||||| |||| | |||||||| | || | |||||| | |||||| Sbjct: 639 gttgttgaattttgtttcctgcgctt-cgttctgtttct-tcgtctgggtt-aatagaag 695 Query: 779 acaagaatggaagcaactaactgttggctgattactgcaatctaactagtctacattcta 838 |||||| ||||||| |||||| ||||||| |||||| ||||||||||| || || | Sbjct: 696 gcaagaaaggaagcagctaactcttggctggttactgtaatctaactaggctccaccccg 755 Query: 839 ctgctagacaaggcagcagatttggtaccaacaactttgtttaggtcatatcaatcttgt 898 |||||| | |||| ||||||||||| || ||||| ||||||||||||||| ||||||||| Sbjct: 756 ctgctacataaggtagcagatttgg-acaaacaaatttgtttaggtcatagcaatcttgt 814 Query: 899 gc 900 || Sbjct: 815 gc 816 Score = 139 bits (70), Expect = 2e-29 Identities = 156/185 (84%), Gaps = 6/185 (3%) Strand = Plus / Plus Query: 79 caaaaccctagccacctccggccctccacatgcaccgcggcggcgaccgctccggagacc 138 ||||||||||||||||| | |||| |||||||||||||||| ||||||||||||| |||| Sbjct: 6 caaaaccctagccaccttctgcccaccacatgcaccgcggcagcgaccgctccggcgacc 65 Query: 139 cctccggccccgcgcccggctctcgcggcggcggggacggccgattcgatttcgcgcgcg 198 || ||||||||||| |||| ||||| |||||| ||||||| || ||||| |||| Sbjct: 66 cccccggccccgcgggcggcgctcgcagcggcgcggacggcaga------ttcgcacgcg 119 Query: 199 gcccctcgcgctggtccgggggcggcgggggtagtccaccccaccgcttctcctcccgcg 258 | ||||| ||||||||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 120 gaccctcacgctggtccggcggcggcgggggtagccccccgccccaccgctcctcccgcg 179 Query: 259 gcggg 263 ||||| Sbjct: 180 gcggg 184 >emb|CT832023.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037D15, full insert sequence Length = 1009 Score = 379 bits (191), Expect = e-101 Identities = 342/391 (87%), Gaps = 1/391 (0%) Strand = Plus / Plus Query: 435 ggccgtggagactactcagatcatgataacagaagtaattatgttaaactatttatcggg 494 |||||||| ||| ||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 443 ggccgtggtgaccactcagatcatgataacagaaacaactatgttaaactttttattggg 502 Query: 495 tcagttccgaggacagctactgaagatgatgttcggcctttattcgaggaccatggagat 554 |||||||| |||||||| ||||| |||||||| || |||||||| ||||| ||||||||| Sbjct: 503 tcagttccaaggacagcgactgaggatgatgtacgtcctttatttgaggagcatggagat 562 Query: 555 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtgtgccaaaa 614 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 563 gttgttgaagttgctttgatcaaggataggaagactggtgaacagcaaggtacggcaaaa 622 Query: 615 ctttttttccttacattatcactatacgtgtatctcttttcttttcaggttctgagagtt 674 ||||||| | | | ||||| || | |||||||| ||||||||||||| ||||||||| Sbjct: 623 cttttttccttaatattattacaagttctgtatctc-tttcttttcaggtcctgagagtt 681 Query: 675 attaggagcaacaaggttgcatcttctctcagttagatttggcgattgttgattttcatt 734 | |||||||||| |||||||||||||||||||||||||||||| ||||||| || || Sbjct: 682 actaggagcaacgaggttgcatcttctctcagttagatttggcagttgttgacttcattt 741 Query: 735 tcctgagcttccattctgtttatctcctgtgggttgagtagaagacaagaatggaagcaa 794 | | | ||||||||||||||| |||||||| |||| |||||| || ||||||||||||| Sbjct: 742 taccgcgcttccattctgtttctctcctgttggttcagtagaggaagagaatggaagcaa 801 Query: 795 ctaactgttggctgattactgcaatctaact 825 ||||||||| |||||||||| ||||||||| Sbjct: 802 ttaactgttgtctgattactgtaatctaact 832 Score = 111 bits (56), Expect = 5e-21 Identities = 79/86 (91%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 104 ccacatgcaccgcggcggcgaccgctccggagacc---cctccggccccgcgcccggctc 160 |||||||||||||||||||||||||||| |||| ||||||||||||||||||| || Sbjct: 118 ccacatgcaccgcggcggcgaccgctccaccgacccctcctccggccccgcgcccggttc 177 Query: 161 tcgcggcggcggggacggccgattcg 186 |||||||||||||||||||||||||| Sbjct: 178 tcgcggcggcggggacggccgattcg 203 Score = 89.7 bits (45), Expect = 2e-14 Identities = 103/122 (84%), Gaps = 9/122 (7%) Strand = Plus / Plus Query: 234 ccaccccaccgcttctcctcccgcggcgggggcgggggcgggggcgacggtggcg----- 288 |||||||||||||||||| || || ||||| |||||||| ||||||||||||| Sbjct: 257 ccaccccaccgcttctcc---cgtggtgggggtgggggcggcggcgacggtggcggaggc 313 Query: 289 -gaggtggaggcgggaggttccacccgtaccgtgggtcgtctgactactctggcggcgga 347 |||||||||||||||||||||||||||||||||| | || ||| |||| ||||||||| Sbjct: 314 ggaggtggaggcgggaggttccacccgtaccgtggcccttcggaccactccggcggcgga 373 Query: 348 gg 349 || Sbjct: 374 gg 375