BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst033o09 (1181 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001059417.1| Oryza sativa (japonica cultivar-group) Os04g... 410 e-111 dbj|AB249661.1| Oryza sativa (japonica cultivar-group) OsRR1 mRN... 410 e-111 dbj|AK105815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 410 e-111 dbj|AK072736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 410 e-111 emb|AJ938070.1| Oryza sativa (indica cultivar-group) mRNA for Ty... 402 e-108 >ref|NM_001059417.1| Oryza sativa (japonica cultivar-group) Os04g0442300 (Os04g0442300) mRNA, complete cds Length = 1808 Score = 410 bits (207), Expect = e-111 Identities = 343/387 (88%), Gaps = 6/387 (1%) Strand = Plus / Plus Query: 286 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 345 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 379 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 438 Query: 346 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 402 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 439 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 498 Query: 403 ggcggcgatggagttcctcgggttgaag---gaaggcaaggagcaggtcatcgatatggt 459 | ||| |||||||||||||| | ||| |||||||||||||||| |||||| ||||| Sbjct: 499 gaaggccatggagttcctcggcctcaaggaagaaggcaaggagcaggccatcgacatggt 558 Query: 460 gctcactgactactgcatgcctgagatgaccggatacgaccttctaaaagccatcaaggc 519 |||||| ||||||||||||||||||||||| || || || ||||| |||||||||||||| Sbjct: 559 gctcaccgactactgcatgcctgagatgactggttatgagcttctcaaagccatcaaggc 618 Query: 520 gctgagccccctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagcg 579 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 619 gctgagccctctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagag 678 Query: 580 gatcagcagatgcttgaaagctggtgctgaggatttcattgtgaagcctctccaaagcaa 639 ||||||||||||| |||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct: 679 gatcagcagatgcatgaatgctggtgctgaagatttcatcgtaaagcctcttcaaagcaa 738 Query: 640 ggatgtgcagcgcctgaggaactgctc 666 ||| || ||||| || ||||||||||| Sbjct: 739 ggacgtacagcgtctcaggaactgctc 765 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 770 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 829 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 896 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 955 Query: 830 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 889 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 956 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 1015 Query: 890 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 937 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1016 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 1063 Score = 119 bits (60), Expect = 3e-23 Identities = 121/139 (87%), Gaps = 8/139 (5%) Strand = Plus / Plus Query: 1043 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1098 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1210 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1269 Query: 1099 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1154 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1270 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1329 Query: 1155 tatctgatgtcctttttgg 1173 ||||||||||||||||||| Sbjct: 1330 tatctgatgtcctttttgg 1348 >dbj|AB249661.1| Oryza sativa (japonica cultivar-group) OsRR1 mRNA for typeA response regulator 1, complete cds Length = 696 Score = 410 bits (207), Expect = e-111 Identities = 343/387 (88%), Gaps = 6/387 (1%) Strand = Plus / Plus Query: 286 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 345 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 15 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 74 Query: 346 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 402 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 75 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 134 Query: 403 ggcggcgatggagttcctcgggttgaag---gaaggcaaggagcaggtcatcgatatggt 459 | ||| |||||||||||||| | ||| |||||||||||||||| |||||| ||||| Sbjct: 135 gaaggccatggagttcctcggcctcaaggaagaaggcaaggagcaggccatcgacatggt 194 Query: 460 gctcactgactactgcatgcctgagatgaccggatacgaccttctaaaagccatcaaggc 519 |||||| ||||||||||||||||||||||| || || || ||||| |||||||||||||| Sbjct: 195 gctcaccgactactgcatgcctgagatgactggttatgagcttctcaaagccatcaaggc 254 Query: 520 gctgagccccctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagcg 579 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 255 gctgagccctctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagag 314 Query: 580 gatcagcagatgcttgaaagctggtgctgaggatttcattgtgaagcctctccaaagcaa 639 ||||||||||||| |||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct: 315 gatcagcagatgcatgaatgctggtgctgaagatttcatcgtaaagcctcttcaaagcaa 374 Query: 640 ggatgtgcagcgcctgaggaactgctc 666 ||| || ||||| || ||||||||||| Sbjct: 375 ggacgtacagcgtctcaggaactgctc 401 Score = 216 bits (109), Expect = 2e-52 Identities = 151/165 (91%) Strand = Plus / Plus Query: 770 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 829 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 532 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 591 Query: 830 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 889 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 592 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 651 Query: 890 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttga 934 ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 652 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttga 696 >dbj|AK105815.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C10, full insert sequence Length = 1312 Score = 410 bits (207), Expect = e-111 Identities = 343/387 (88%), Gaps = 6/387 (1%) Strand = Plus / Plus Query: 286 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 345 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 181 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 240 Query: 346 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 402 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 241 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 300 Query: 403 ggcggcgatggagttcctcgggttgaag---gaaggcaaggagcaggtcatcgatatggt 459 | ||| |||||||||||||| | ||| |||||||||||||||| |||||| ||||| Sbjct: 301 gaaggccatggagttcctcggcctcaaggaagaaggcaaggagcaggccatcgacatggt 360 Query: 460 gctcactgactactgcatgcctgagatgaccggatacgaccttctaaaagccatcaaggc 519 |||||| ||||||||||||||||||||||| || || || ||||| |||||||||||||| Sbjct: 361 gctcaccgactactgcatgcctgagatgactggttatgagcttctcaaagccatcaaggc 420 Query: 520 gctgagccccctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagcg 579 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 421 gctgagccctctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagag 480 Query: 580 gatcagcagatgcttgaaagctggtgctgaggatttcattgtgaagcctctccaaagcaa 639 ||||||||||||| |||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct: 481 gatcagcagatgcatgaatgctggtgctgaagatttcatcgtaaagcctcttcaaagcaa 540 Query: 640 ggatgtgcagcgcctgaggaactgctc 666 ||| || ||||| || ||||||||||| Sbjct: 541 ggacgtacagcgtctcaggaactgctc 567 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 770 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 829 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 698 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 757 Query: 830 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 889 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 758 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 817 Query: 890 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 937 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 818 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 865 Score = 119 bits (60), Expect = 3e-23 Identities = 121/139 (87%), Gaps = 8/139 (5%) Strand = Plus / Plus Query: 1043 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1098 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1012 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1071 Query: 1099 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1154 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1072 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1131 Query: 1155 tatctgatgtcctttttgg 1173 ||||||||||||||||||| Sbjct: 1132 tatctgatgtcctttttgg 1150 >dbj|AK072736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139D11, full insert sequence Length = 1808 Score = 410 bits (207), Expect = e-111 Identities = 343/387 (88%), Gaps = 6/387 (1%) Strand = Plus / Plus Query: 286 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 345 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 379 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 438 Query: 346 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 402 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 439 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 498 Query: 403 ggcggcgatggagttcctcgggttgaag---gaaggcaaggagcaggtcatcgatatggt 459 | ||| |||||||||||||| | ||| |||||||||||||||| |||||| ||||| Sbjct: 499 gaaggccatggagttcctcggcctcaaggaagaaggcaaggagcaggccatcgacatggt 558 Query: 460 gctcactgactactgcatgcctgagatgaccggatacgaccttctaaaagccatcaaggc 519 |||||| ||||||||||||||||||||||| || || || ||||| |||||||||||||| Sbjct: 559 gctcaccgactactgcatgcctgagatgactggttatgagcttctcaaagccatcaaggc 618 Query: 520 gctgagccccctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagcg 579 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 619 gctgagccctctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagag 678 Query: 580 gatcagcagatgcttgaaagctggtgctgaggatttcattgtgaagcctctccaaagcaa 639 ||||||||||||| |||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct: 679 gatcagcagatgcatgaatgctggtgctgaagatttcatcgtaaagcctcttcaaagcaa 738 Query: 640 ggatgtgcagcgcctgaggaactgctc 666 ||| || ||||| || ||||||||||| Sbjct: 739 ggacgtacagcgtctcaggaactgctc 765 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 770 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 829 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 896 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 955 Query: 830 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 889 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 956 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 1015 Query: 890 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 937 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1016 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 1063 Score = 119 bits (60), Expect = 3e-23 Identities = 121/139 (87%), Gaps = 8/139 (5%) Strand = Plus / Plus Query: 1043 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1098 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1210 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1269 Query: 1099 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1154 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1270 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1329 Query: 1155 tatctgatgtcctttttgg 1173 ||||||||||||||||||| Sbjct: 1330 tatctgatgtcctttttgg 1348 >emb|AJ938070.1| Oryza sativa (indica cultivar-group) mRNA for Type A response regulator 1 (rr1 gene) Length = 696 Score = 402 bits (203), Expect = e-108 Identities = 342/387 (88%), Gaps = 6/387 (1%) Strand = Plus / Plus Query: 286 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 345 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 15 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 74 Query: 346 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 402 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 75 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 134 Query: 403 ggcggcgatggagttcctcgggttgaag---gaaggcaaggagcaggtcatcgatatggt 459 | ||| |||||||||||||| | ||| |||||||||||||||| |||||| ||||| Sbjct: 135 gaaggccatggagttcctcggcctcaaggaagaaggcaaggagcaggccatcgacatggt 194 Query: 460 gctcactgactactgcatgcctgagatgaccggatacgaccttctaaaagccatcaaggc 519 |||||| ||||||||||||||||||||||| || || || ||||| |||||||||||||| Sbjct: 195 gctcaccgactactgcatgcctgagatgactggttatgagcttctcaaagccatcaaggc 254 Query: 520 gctgagccccctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagcg 579 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 255 gctgagccctctgaagccgatcccagtgatcgtcatgtcgtcggaaaacgagccccagag 314 Query: 580 gatcagcagatgcttgaaagctggtgctgaggatttcattgtgaagcctctccaaagcaa 639 ||||||||||||| |||| ||||||||||| |||||||| || |||||||| |||||||| Sbjct: 315 gatcagcagatgcatgaatgctggtgctgaagatttcatcgtaaagcctcttcaaagcaa 374 Query: 640 ggatgtgcagcgcctgaggaactgctc 666 ||| || ||||| || ||||| ||||| Sbjct: 375 ggacgtacagcgtctcaggaagtgctc 401 Score = 224 bits (113), Expect = 6e-55 Identities = 152/165 (92%) Strand = Plus / Plus Query: 770 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 829 |||||| ||||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 532 cacttcgccggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 591 Query: 830 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 889 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 592 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 651 Query: 890 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttga 934 ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 652 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttga 696