BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst033n17 (837 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CT835338.1| Oryza sativa (indica cultivar-group) cDNA clone:... 250 8e-63 ref|NM_001052302.1| Oryza sativa (japonica cultivar-group) Os02g... 250 8e-63 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 5e-30 dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 141 5e-30 dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 141 5e-30 >emb|CT835338.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA236E11, full insert sequence Length = 948 Score = 250 bits (126), Expect = 8e-63 Identities = 282/334 (84%) Strand = Plus / Plus Query: 233 gaggcgtgggttcagcgtccaggtgcccgtcaccgtcgagcggtcggggcccgggccggt 292 |||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| Sbjct: 288 gaggcgcgggttcagcgtccaggtccccgtccccgtcgagcggcccgggcccgggccggt 347 Query: 293 gctggtgccctgcccccagggagacggcagcgtccagggttttaggtggtatacaaggag 352 ||| |||||||| |||||||| |||||| |||| ||||| ||||||||||||||||||| Sbjct: 348 gctcgtgccctgtccccagggcgacggcggcgttcagggctttaggtggtatacaaggaa 407 Query: 353 gttaaggattgatgaagatggtgatgtcgccgatgagttcttggatgaggttgttccaga 412 | ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 408 gctaaggattgatgaggatggtgatgtcgcagatgagttcttggatgaagttgttccaga 467 Query: 413 aagcttgaccaacaatgacgcaggcccagttggaaggtttcgggtgaagtacaataccag 472 || || || |||||| ||| || |||| |||||| | || ||||| || ||||| | Sbjct: 468 aatctcgatcaacaacgactcaactccagctggaagatatcaagtgaaatataatacaaa 527 Query: 473 accgaccgctctagcaatgagaaagcagacgatcgccgttgacggtgacatccgtcatag 532 | | | |||||||||||||||||||| | || | |||| ||||||||| ||||| Sbjct: 528 atcagctgctctagcaatgagaaagcaaatatccgtcattgatggtgacatctgtcattc 587 Query: 533 cttggagtgccaagggcaactgcggtgggtgtga 566 |||||||| |||||||| ||||| ||||||||| Sbjct: 588 cttggagtaccaagggcgcctgcgttgggtgtga 621 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Plus Query: 79 cgccgtcgatgggtttcttccgccggatcgccggcatcctcggcatctccagggacgacg 138 ||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 104 cgccggcgatgggtttcttccgccggatcgccggcatgtttggaatctccagggacgacg 163 Query: 139 ccgacca 145 ||||||| Sbjct: 164 ccgacca 170 >ref|NM_001052302.1| Oryza sativa (japonica cultivar-group) Os02g0128100 (Os02g0128100) mRNA, complete cds Length = 510 Score = 250 bits (126), Expect = 8e-63 Identities = 282/334 (84%) Strand = Plus / Plus Query: 233 gaggcgtgggttcagcgtccaggtgcccgtcaccgtcgagcggtcggggcccgggccggt 292 |||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| Sbjct: 177 gaggcgcgggttcagcgtccaggtccccgtccccgtcgagcggcccgggcccgggccggt 236 Query: 293 gctggtgccctgcccccagggagacggcagcgtccagggttttaggtggtatacaaggag 352 ||| |||||||| |||||||| |||||| |||| ||||| ||||||||||||||||||| Sbjct: 237 gctcgtgccctgtccccagggcgacggcggcgttcagggctttaggtggtatacaaggaa 296 Query: 353 gttaaggattgatgaagatggtgatgtcgccgatgagttcttggatgaggttgttccaga 412 | ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 297 gctaaggattgatgaggatggtgatgtcgcagatgagttcttggatgaagttgttccaga 356 Query: 413 aagcttgaccaacaatgacgcaggcccagttggaaggtttcgggtgaagtacaataccag 472 || || || |||||| ||| || |||| |||||| | || ||||| || ||||| | Sbjct: 357 aatctcgatcaacaacgactcaactccagctggaagatatcaagtgaaatataatacaaa 416 Query: 473 accgaccgctctagcaatgagaaagcagacgatcgccgttgacggtgacatccgtcatag 532 | | | |||||||||||||||||||| | || | |||| ||||||||| ||||| Sbjct: 417 atcagctgctctagcaatgagaaagcaaatatccgtcattgatggtgacatctgtcattc 476 Query: 533 cttggagtgccaagggcaactgcggtgggtgtga 566 |||||||| |||||||| ||||| ||||||||| Sbjct: 477 cttggagtaccaagggcgcctgcgttgggtgtga 510 Score = 85.7 bits (43), Expect = 3e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 87 atgggtttcttccgccggatcgccggcatcctcggcatctccagggacgacgccgacca 145 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1 atgggtttcttccgccggatcgccggcatgtttggaatctccagggacgacgccgacca 59 >dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 141 bits (71), Expect = 5e-30 Identities = 197/239 (82%) Strand = Plus / Plus Query: 328 agggttttaggtggtatacaaggaggttaaggattgatgaagatggtgatgtcgccgatg 387 |||| ||||||||||||||||||| | ||||||||||||| |||||||||||||| |||| Sbjct: 1455786 agggctttaggtggtatacaaggaagctaaggattgatgaggatggtgatgtcgcagatg 1455845 Query: 388 agttcttggatgaggttgttccagaaagcttgaccaacaatgacgcaggcccagttggaa 447 ||||||||||||| ||||||||||||| || || |||||| ||| || |||| ||||| Sbjct: 1455846 agttcttggatgaagttgttccagaaatctcgatcaacaacgactcaactccagctggaa 1455905 Query: 448 ggtttcgggtgaagtacaataccagaccgaccgctctagcaatgagaaagcagacgatcg 507 | | || ||||| || ||||| | | | | |||||||||||||||||||| | || Sbjct: 1455906 gatatcaagtgaaatataatacaaaatcagctgctctagcaatgagaaagcaaatatccg 1455965 Query: 508 ccgttgacggtgacatccgtcatagcttggagtgccaagggcaactgcggtgggtgtga 566 | |||| ||||||||| ||||| |||||||| |||||||| ||||| ||||||||| Sbjct: 1455966 tcattgatggtgacatctgtcattccttggagtaccaagggcgcctgcgttgggtgtga 1456024 Score = 115 bits (58), Expect = 3e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 233 gaggcgtgggttcagcgtccaggtgcccgtcaccgtcgagcggtcggggcccgggccggt 292 |||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| Sbjct: 1453654 gaggcgcgggttcagcgtccaggtccccgtccccgtcgagcggcccgggcccgggccggt 1453713 Query: 293 gctggtgccctgcccccagggagacggcagcgtccagg 330 ||| |||||||| |||||||| |||||| |||| |||| Sbjct: 1453714 gctcgtgccctgtccccagggcgacggcggcgttcagg 1453751 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Plus Query: 79 cgccgtcgatgggtttcttccgccggatcgccggcatcctcggcatctccagggacgacg 138 ||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 1453470 cgccggcgatgggtttcttccgccggatcgccggcatgtttggaatctccagggacgacg 1453529 Query: 139 ccgacca 145 ||||||| Sbjct: 1453530 ccgacca 1453536 >dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 141 bits (71), Expect = 5e-30 Identities = 197/239 (82%) Strand = Plus / Plus Query: 328 agggttttaggtggtatacaaggaggttaaggattgatgaagatggtgatgtcgccgatg 387 |||| ||||||||||||||||||| | ||||||||||||| |||||||||||||| |||| Sbjct: 137058 agggctttaggtggtatacaaggaagctaaggattgatgaggatggtgatgtcgcagatg 137117 Query: 388 agttcttggatgaggttgttccagaaagcttgaccaacaatgacgcaggcccagttggaa 447 ||||||||||||| ||||||||||||| || || |||||| ||| || |||| ||||| Sbjct: 137118 agttcttggatgaagttgttccagaaatctcgatcaacaacgactcaactccagctggaa 137177 Query: 448 ggtttcgggtgaagtacaataccagaccgaccgctctagcaatgagaaagcagacgatcg 507 | | || ||||| || ||||| | | | | |||||||||||||||||||| | || Sbjct: 137178 gatatcaagtgaaatataatacaaaatcagctgctctagcaatgagaaagcaaatatccg 137237 Query: 508 ccgttgacggtgacatccgtcatagcttggagtgccaagggcaactgcggtgggtgtga 566 | |||| ||||||||| ||||| |||||||| |||||||| ||||| ||||||||| Sbjct: 137238 tcattgatggtgacatctgtcattccttggagtaccaagggcgcctgcgttgggtgtga 137296 Score = 115 bits (58), Expect = 3e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 233 gaggcgtgggttcagcgtccaggtgcccgtcaccgtcgagcggtcggggcccgggccggt 292 |||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| Sbjct: 134926 gaggcgcgggttcagcgtccaggtccccgtccccgtcgagcggcccgggcccgggccggt 134985 Query: 293 gctggtgccctgcccccagggagacggcagcgtccagg 330 ||| |||||||| |||||||| |||||| |||| |||| Sbjct: 134986 gctcgtgccctgtccccagggcgacggcggcgttcagg 135023 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Plus Query: 79 cgccgtcgatgggtttcttccgccggatcgccggcatcctcggcatctccagggacgacg 138 ||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 134742 cgccggcgatgggtttcttccgccggatcgccggcatgtttggaatctccagggacgacg 134801 Query: 139 ccgacca 145 ||||||| Sbjct: 134802 ccgacca 134808 >dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 141 bits (71), Expect = 5e-30 Identities = 197/239 (82%) Strand = Plus / Plus Query: 328 agggttttaggtggtatacaaggaggttaaggattgatgaagatggtgatgtcgccgatg 387 |||| ||||||||||||||||||| | ||||||||||||| |||||||||||||| |||| Sbjct: 19207 agggctttaggtggtatacaaggaagctaaggattgatgaggatggtgatgtcgcagatg 19266 Query: 388 agttcttggatgaggttgttccagaaagcttgaccaacaatgacgcaggcccagttggaa 447 ||||||||||||| ||||||||||||| || || |||||| ||| || |||| ||||| Sbjct: 19267 agttcttggatgaagttgttccagaaatctcgatcaacaacgactcaactccagctggaa 19326 Query: 448 ggtttcgggtgaagtacaataccagaccgaccgctctagcaatgagaaagcagacgatcg 507 | | || ||||| || ||||| | | | | |||||||||||||||||||| | || Sbjct: 19327 gatatcaagtgaaatataatacaaaatcagctgctctagcaatgagaaagcaaatatccg 19386 Query: 508 ccgttgacggtgacatccgtcatagcttggagtgccaagggcaactgcggtgggtgtga 566 | |||| ||||||||| ||||| |||||||| |||||||| ||||| ||||||||| Sbjct: 19387 tcattgatggtgacatctgtcattccttggagtaccaagggcgcctgcgttgggtgtga 19445 Score = 115 bits (58), Expect = 3e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 233 gaggcgtgggttcagcgtccaggtgcccgtcaccgtcgagcggtcggggcccgggccggt 292 |||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||||| Sbjct: 17075 gaggcgcgggttcagcgtccaggtccccgtccccgtcgagcggcccgggcccgggccggt 17134 Query: 293 gctggtgccctgcccccagggagacggcagcgtccagg 330 ||| |||||||| |||||||| |||||| |||| |||| Sbjct: 17135 gctcgtgccctgtccccagggcgacggcggcgttcagg 17172 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Plus Query: 79 cgccgtcgatgggtttcttccgccggatcgccggcatcctcggcatctccagggacgacg 138 ||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct: 16891 cgccggcgatgggtttcttccgccggatcgccggcatgtttggaatctccagggacgacg 16950 Query: 139 ccgacca 145 ||||||| Sbjct: 16951 ccgacca 16957