BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst031i07
         (572 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)   289   6e-75
ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g...   281   1e-72
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...   281   1e-72
emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa...   281   1e-72
dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN...   281   1e-72

>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score =  289 bits (146), Expect = 6e-75
 Identities = 203/222 (91%)
 Strand = Plus / Plus

                                                                       
Query: 95  tttggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccct 154
           |||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||| |||||
Sbjct: 77  tttggcatctgagcccaacagctagcagatggcaggcggcagagttgcacatgcgaccct 136

                                                                       
Query: 155 caaggggccgagcgtgttgaaggagatctgcattggatttacccttgggctgtttgctgg 214
           |||||||||||||||| |||||||||||| ||||||| | |||||||||||| |||||||
Sbjct: 137 caaggggccgagcgtggtgaaggagatcttcattggactcacccttgggctggttgctgg 196

                                                                       
Query: 215 tggtctgtggaagatgcatcattggaacgagcagaggaagactagatccttctatgacat 274
           |||| |||||||||||||||| ||||||||||||||||||||  |||||||||| |||||
Sbjct: 197 tggtatgtggaagatgcatcactggaacgagcagaggaagacccgatccttctacgacat 256

                                                     
Query: 275 gcttgagaaggggcaaatcagcgtcgttgttgaagagtagtt 316
           ||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 257 gctcgagaaggggcagatcagcgtcgttgttgaggagtagtt 298


>ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g0561000 (Os12g0561000)
           mRNA, complete cds
          Length = 495

 Score =  281 bits (142), Expect = 1e-72
 Identities = 184/198 (92%)
 Strand = Plus / Plus

                                                                       
Query: 98  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 157
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 55  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 114

                                                                       
Query: 158 ggggccgagcgtgttgaaggagatctgcattggatttacccttgggctgtttgctggtgg 217
           ||||||||||||| |||||||||||||||||||  | |||||||||||| | ||||||||
Sbjct: 115 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 174

                                                                       
Query: 218 tctgtggaagatgcatcattggaacgagcagaggaagactagatccttctatgacatgct 277
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 175 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 234

                             
Query: 278 tgagaaggggcaaatcag 295
            |||||||| || |||||
Sbjct: 235 cgagaagggccagatcag 252



 Score =  137 bits (69), Expect = 5e-29
 Identities = 100/109 (91%), Gaps = 1/109 (0%)
 Strand = Plus / Plus

                                                                       
Query: 370 agttatttccaaaattctctggagagcatgacaaagtgagtgccgtggagattgtcatg- 428
           |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||| 
Sbjct: 310 agttatttctgaaactctctggagagcatgacaaagctagtgccgtggagattgtcatga 369

                                                            
Query: 429 aaaataagcatagccatttgagaacattggatcttgttgaatttgcttc 477
           |||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 370 aaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttc 418


>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score =  281 bits (142), Expect = 1e-72
 Identities = 184/198 (92%)
 Strand = Plus / Minus

                                                                            
Query: 98       ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 157
                |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 23003497 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 23003438

                                                                            
Query: 158      ggggccgagcgtgttgaaggagatctgcattggatttacccttgggctgtttgctggtgg 217
                ||||||||||||| |||||||||||||||||||  | |||||||||||| | ||||||||
Sbjct: 23003437 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 23003378

                                                                            
Query: 218      tctgtggaagatgcatcattggaacgagcagaggaagactagatccttctatgacatgct 277
                |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 23003377 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 23003318

                                  
Query: 278      tgagaaggggcaaatcag 295
                 |||||||| || |||||
Sbjct: 23003317 cgagaagggccagatcag 23003300



 Score =  137 bits (69), Expect = 5e-29
 Identities = 100/109 (91%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                            
Query: 370      agttatttccaaaattctctggagagcatgacaaagtgagtgccgtggagattgtcatg- 428
                |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||| 
Sbjct: 23003242 agttatttctgaaactctctggagagcatgacaaagctagtgccgtggagattgtcatga 23003183

                                                                 
Query: 429      aaaataagcatagccatttgagaacattggatcttgttgaatttgcttc 477
                |||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 23003182 aaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttc 23003134


>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  281 bits (142), Expect = 1e-72
 Identities = 184/198 (92%)
 Strand = Plus / Minus

                                                                          
Query: 98     ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 157
              |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 112774 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 112715

                                                                          
Query: 158    ggggccgagcgtgttgaaggagatctgcattggatttacccttgggctgtttgctggtgg 217
              ||||||||||||| |||||||||||||||||||  | |||||||||||| | ||||||||
Sbjct: 112714 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 112655

                                                                          
Query: 218    tctgtggaagatgcatcattggaacgagcagaggaagactagatccttctatgacatgct 277
              |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 112654 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 112595

                                
Query: 278    tgagaaggggcaaatcag 295
               |||||||| || |||||
Sbjct: 112594 cgagaagggccagatcag 112577



 Score =  137 bits (69), Expect = 5e-29
 Identities = 100/109 (91%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                          
Query: 370    agttatttccaaaattctctggagagcatgacaaagtgagtgccgtggagattgtcatg- 428
              |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||| 
Sbjct: 112519 agttatttctgaaactctctggagagcatgacaaagctagtgccgtggagattgtcatga 112460

                                                               
Query: 429    aaaataagcatagccatttgagaacattggatcttgttgaatttgcttc 477
              |||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 112459 aaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttc 112411


>dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c
           oxidase subunit 5c, complete cds
          Length = 533

 Score =  281 bits (142), Expect = 1e-72
 Identities = 184/198 (92%)
 Strand = Plus / Plus

                                                                       
Query: 98  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 157
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 74  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 133

                                                                       
Query: 158 ggggccgagcgtgttgaaggagatctgcattggatttacccttgggctgtttgctggtgg 217
           ||||||||||||| |||||||||||||||||||  | |||||||||||| | ||||||||
Sbjct: 134 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 193

                                                                       
Query: 218 tctgtggaagatgcatcattggaacgagcagaggaagactagatccttctatgacatgct 277
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 194 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 253

                             
Query: 278 tgagaaggggcaaatcag 295
            |||||||| || |||||
Sbjct: 254 cgagaagggccagatcag 271



 Score =  137 bits (69), Expect = 5e-29
 Identities = 100/109 (91%), Gaps = 1/109 (0%)
 Strand = Plus / Plus

                                                                       
Query: 370 agttatttccaaaattctctggagagcatgacaaagtgagtgccgtggagattgtcatg- 428
           |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||| 
Sbjct: 329 agttatttctgaaactctctggagagcatgacaaagctagtgccgtggagattgtcatga 388

                                                            
Query: 429 aaaataagcatagccatttgagaacattggatcttgttgaatttgcttc 477
           |||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 389 aaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttc 437