BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst030e16 (731 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001055505.1| Oryza sativa (japonica cultivar-group) Os03g... 507 e-140 dbj|AB200235.1| Oryza sativa (japonica cultivar-group) CRLL1 mRN... 507 e-140 gb|EF051734.1| Zea mays RTCN mRNA, complete cds 502 e-138 dbj|AK107949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 422 e-115 >ref|NM_001055505.1| Oryza sativa (japonica cultivar-group) Os03g0149000 (Os03g0149000) mRNA, complete cds Length = 722 Score = 507 bits (256), Expect = e-140 Identities = 325/348 (93%) Strand = Plus / Plus Query: 61 ggcggcgcgccgggctcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgctcagcg 120 ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 55 ggcggcgtgccggggtcgccgtgcggggcgtgcaagttcctgcggcgcaagtgcgcggcg 114 Query: 121 gagtgcgtgttcgcgccctacttctgcgcggaggacggggccgcgcagttcgcggccatc 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 115 gagtgcgtgttcgcgccctacttctgcgcggaggacggggcggcgcagttcgcggcgata 174 Query: 181 cacaaggtgttcggcgcgagcaacgcggccaagctgctgcagcaggtgccccccgccgac 240 ||||||||||||||||| ||||||||||| |||||||||||||||||| | || | |||| Sbjct: 175 cacaaggtgttcggcgccagcaacgcggcgaagctgctgcagcaggtggcgccgggcgac 234 Query: 241 cggagcgaggccgccgccaccgtcacctacgaggcgcaagccaggctgcgcgaccccatc 300 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 235 cggagcgaggtcgccgccaccgtcacctacgaggcgcaggccaggctgcgcgaccccgtc 294 Query: 301 tacggctgcgtcgcccacatcttcgcgctgcagcagcaggtcgcgaccctgcagatgcag 360 ||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| Sbjct: 295 tacggctgcgtcgcccacatcttcgcgctgcagcagcagctggcgacgctgcaggtgcag 354 Query: 361 gtggcgcaggcgaagacgcaggtggcccagacgttggcggcggccggc 408 |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 355 gtggcgcaggcgaagacgcaggtggcgcagacgctggcggcggccggc 402 Score = 133 bits (67), Expect = 1e-27 Identities = 128/148 (86%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 435 gcagcaggcgtggcagatggatcacgaatcgatg------tcgacgcagagctccgggtg 488 |||||||||||||||||| || ||||| |||| | ||||||||||||||||| || Sbjct: 447 gcagcaggcgtggcagattgagcacgagtcgacgatgacctcgacgcagagctccggctg 506 Query: 489 ctatagcgcgcctcgctccgacggatca---tcgctgcaagagatgtactgcttcggcga 545 ||| |||||||| ||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 507 ctacagcgcgccgcgctccgacgggtcgacgtcgctgcaggacatgtactgcttcggcga 566 Query: 546 gcaggaggaaggcagctactcaagatga 573 |||||||||||||||||||||||||||| Sbjct: 567 gcaggaggaaggcagctactcaagatga 594 >dbj|AB200235.1| Oryza sativa (japonica cultivar-group) CRLL1 mRNA for LOB domain protein, complete cds Length = 558 Score = 507 bits (256), Expect = e-140 Identities = 325/348 (93%) Strand = Plus / Plus Query: 61 ggcggcgcgccgggctcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgctcagcg 120 ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 19 ggcggcgtgccggggtcgccgtgcggggcgtgcaagttcctgcggcgcaagtgcgcggcg 78 Query: 121 gagtgcgtgttcgcgccctacttctgcgcggaggacggggccgcgcagttcgcggccatc 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 79 gagtgcgtgttcgcgccctacttctgcgcggaggacggggcggcgcagttcgcggcgata 138 Query: 181 cacaaggtgttcggcgcgagcaacgcggccaagctgctgcagcaggtgccccccgccgac 240 ||||||||||||||||| ||||||||||| |||||||||||||||||| | || | |||| Sbjct: 139 cacaaggtgttcggcgccagcaacgcggcgaagctgctgcagcaggtggcgccgggcgac 198 Query: 241 cggagcgaggccgccgccaccgtcacctacgaggcgcaagccaggctgcgcgaccccatc 300 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 199 cggagcgaggtcgccgccaccgtcacctacgaggcgcaggccaggctgcgcgaccccgtc 258 Query: 301 tacggctgcgtcgcccacatcttcgcgctgcagcagcaggtcgcgaccctgcagatgcag 360 ||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| Sbjct: 259 tacggctgcgtcgcccacatcttcgcgctgcagcagcagctggcgacgctgcaggtgcag 318 Query: 361 gtggcgcaggcgaagacgcaggtggcccagacgttggcggcggccggc 408 |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 319 gtggcgcaggcgaagacgcaggtggcgcagacgctggcggcggccggc 366 Score = 133 bits (67), Expect = 1e-27 Identities = 128/148 (86%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 435 gcagcaggcgtggcagatggatcacgaatcgatg------tcgacgcagagctccgggtg 488 |||||||||||||||||| || ||||| |||| | ||||||||||||||||| || Sbjct: 411 gcagcaggcgtggcagattgagcacgagtcgacgatgacctcgacgcagagctccggctg 470 Query: 489 ctatagcgcgcctcgctccgacggatca---tcgctgcaagagatgtactgcttcggcga 545 ||| |||||||| ||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 471 ctacagcgcgccgcgctccgacgggtcgacgtcgctgcaggacatgtactgcttcggcga 530 Query: 546 gcaggaggaaggcagctactcaagatga 573 |||||||||||||||||||||||||||| Sbjct: 531 gcaggaggaaggcagctactcaagatga 558 >gb|EF051734.1| Zea mays RTCN mRNA, complete cds Length = 977 Score = 502 bits (253), Expect = e-138 Identities = 393/439 (89%), Gaps = 3/439 (0%) Strand = Plus / Plus Query: 58 ggtggcggcgcgccgggctcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgctca 117 ||||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||| | Sbjct: 176 ggtggcggctcgccggggtccccgtgtggcgcctgcaagttcctgcggcgcaagtgcgcg 235 Query: 118 gcggagtgcgtgttcgcgccctacttctgcgcggaggacggggccgcgcagttcgcggcc 177 ||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| Sbjct: 236 gcggagtgcgtgttcgctccccacttctgcgccgaggacggggcggcgcagttcgcggcc 295 Query: 178 atccacaaggtgttcggcgcgagcaacgcggccaagctgctgcagcaggtgccccccgcc 237 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 296 atccacaaggtgttcggcgccagcaacgcggccaagctgctgcagcaggtggcccccgcc 355 Query: 238 gaccggagcgaggccgccgccaccgtcacctacgaggcgcaagccaggctgcgcgacccc 297 |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 356 gaccggagcgaggcggcggccaccgtcacctacgaggcgcaggccaggctgcgcgacccc 415 Query: 298 atctacggctgcgtcgcccacatcttcgcgctgcagcagcaggtcgcgaccctgcagatg 357 |||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||| Sbjct: 416 atctacggctgcgtcgcccacatcttcgcgctgcagcaacaggtggcgagcttgcagatg 475 Query: 358 caggtggcgcaggcgaagacgcaggtggcccagacgttggcggcggccggcgcgcagctg 417 |||||| |||||||||| |||||||||| |||||| ||||||||||||| ||||| | Sbjct: 476 caggtgctgcaggcgaaggcgcaggtggcgcagacgatggcggcggccgggccgcagggg 535 Query: 418 atgggcaaccctctcctgcagcaggcgtggcagatggatcacgaatcgatgtcgacgcag 477 ||| |||||||||||||| ||||| | |||| | || ||| ||||||||||| Sbjct: 536 ggcagcagccctctcctgcagc---ggtggccgctggagcctgagtcgctgtcgacgcag 592 Query: 478 agctccgggtgctatagcg 496 |||||||||||||| |||| Sbjct: 593 agctccgggtgctacagcg 611 >dbj|AK107949.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B09, full insert sequence Length = 722 Score = 500 bits (252), Expect = e-138 Identities = 324/348 (93%) Strand = Plus / Plus Query: 61 ggcggcgcgccgggctcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgctcagcg 120 ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 55 ggcggcgtgccggggtcgccgtgcggggcgtgcaagttcctgcggcgcaagtgcgcggcg 114 Query: 121 gagtgcgtgttcgcgccctacttctgcgcggaggacggggccgcgcagttcgcggccatc 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 115 gagtgcgtgttcgcgccctacttctgcgcggaggacggggcggcgcagttcgcggcgata 174 Query: 181 cacaaggtgttcggcgcgagcaacgcggccaagctgctgcagcaggtgccccccgccgac 240 ||||||||||||||||| ||||||||||| |||||||||||||||||| | || | |||| Sbjct: 175 cacaaggtgttcggcgccagcaacgcggcgaagctgctgcagcaggtggcgccgggcgac 234 Query: 241 cggagcgaggccgccgccaccgtcacctacgaggcgcaagccaggctgcgcgaccccatc 300 |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct: 235 cggagcgaggtcgccgccaccgtcacctacgaggcgcaggccaggccgcgcgaccccgtc 294 Query: 301 tacggctgcgtcgcccacatcttcgcgctgcagcagcaggtcgcgaccctgcagatgcag 360 ||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| Sbjct: 295 tacggctgcgtcgcccacatcttcgcgctgcagcagcagctggcgacgctgcaggtgcag 354 Query: 361 gtggcgcaggcgaagacgcaggtggcccagacgttggcggcggccggc 408 |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 355 gtggcgcaggcgaagacgcaggtggcgcagacgctggcggcggccggc 402 Score = 133 bits (67), Expect = 1e-27 Identities = 128/148 (86%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 435 gcagcaggcgtggcagatggatcacgaatcgatg------tcgacgcagagctccgggtg 488 |||||||||||||||||| || ||||| |||| | ||||||||||||||||| || Sbjct: 447 gcagcaggcgtggcagattgagcacgagtcgacgatgacctcgacgcagagctccggctg 506 Query: 489 ctatagcgcgcctcgctccgacggatca---tcgctgcaagagatgtactgcttcggcga 545 ||| |||||||| ||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 507 ctacagcgcgccgcgctccgacgggtcgacgtcgctgcaggacatgtactgcttcggcga 566 Query: 546 gcaggaggaaggcagctactcaagatga 573 |||||||||||||||||||||||||||| Sbjct: 567 gcaggaggaaggcagctactcaagatga 594 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 422 bits (213), Expect = e-115 Identities = 264/281 (93%) Strand = Plus / Plus Query: 61 ggcggcgcgccgggctcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgctcagcg 120 ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 2704878 ggcggcgtgccggggtcgccgtgcggggcgtgcaagttcctgcggcgcaagtgcgcggcg 2704937 Query: 121 gagtgcgtgttcgcgccctacttctgcgcggaggacggggccgcgcagttcgcggccatc 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 2704938 gagtgcgtgttcgcgccctacttctgcgcggaggacggggcggcgcagttcgcggcgata 2704997 Query: 181 cacaaggtgttcggcgcgagcaacgcggccaagctgctgcagcaggtgccccccgccgac 240 ||||||||||||||||| ||||||||||| |||||||||||||||||| | || | |||| Sbjct: 2704998 cacaaggtgttcggcgccagcaacgcggcgaagctgctgcagcaggtggcgccgggcgac 2705057 Query: 241 cggagcgaggccgccgccaccgtcacctacgaggcgcaagccaggctgcgcgaccccatc 300 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 2705058 cggagcgaggtcgccgccaccgtcacctacgaggcgcaggccaggctgcgcgaccccgtc 2705117 Query: 301 tacggctgcgtcgcccacatcttcgcgctgcagcagcaggt 341 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2705118 tacggctgcgtcgcccacatcttcgcgctgcagcagcaggt 2705158 Score = 204 bits (103), Expect = 4e-49 Identities = 228/267 (85%), Gaps = 2/267 (0%) Strand = Plus / Minus Query: 76 tcgccgtgcggcgcgtgcaagttcctgcggcgcaagtgc-tcagcggagtgcgtgttcgc 134 ||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||||| Sbjct: 2709331 tcgccgtgcggcgcgtgcaagtttctgcggcgcaagtgcgtgcgcgg-gtgcgtgttcgc 2709273 Query: 135 gccctacttctgcgcggaggacggggccgcgcagttcgcggccatccacaaggtgttcgg 194 ||| ||||||||| ||| | ||||| ||||| ||||| |||||||||||||||||||| Sbjct: 2709272 gccatacttctgccacgagcaaggggcggcgcacttcgccgccatccacaaggtgttcgg 2709213 Query: 195 cgcgagcaacgcggccaagctgctgcagcaggtgccccccgccgaccggagcgaggccgc 254 ||| ||||||| | |||||||||| || |||| | ||||||||| ||||||||| Sbjct: 2709212 cgccagcaacgtgtccaagctgctcgcccacctgccgctcgccgaccgccccgaggccgc 2709153 Query: 255 cgccaccgtcacctacgaggcgcaagccaggctgcgcgaccccatctacggctgcgtcgc 314 || ||| || ||||||||||||| ||| | || |||||||||||||| ||||||||||| Sbjct: 2709152 cgtcactatctcctacgaggcgcaggcccgcctccgcgaccccatctatggctgcgtcgc 2709093 Query: 315 ccacatcttcgcgctgcagcagcaggt 341 |||||||||||| || ||||||||||| Sbjct: 2709092 ccacatcttcgccctccagcagcaggt 2709066 Score = 133 bits (67), Expect = 1e-27 Identities = 128/148 (86%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 435 gcagcaggcgtggcagatggatcacgaatcgatg------tcgacgcagagctccgggtg 488 |||||||||||||||||| || ||||| |||| | ||||||||||||||||| || Sbjct: 2705347 gcagcaggcgtggcagattgagcacgagtcgacgatgacctcgacgcagagctccggctg 2705406 Query: 489 ctatagcgcgcctcgctccgacggatca---tcgctgcaagagatgtactgcttcggcga 545 ||| |||||||| ||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 2705407 ctacagcgcgccgcgctccgacgggtcgacgtcgctgcaggacatgtactgcttcggcga 2705466 Query: 546 gcaggaggaaggcagctactcaagatga 573 |||||||||||||||||||||||||||| Sbjct: 2705467 gcaggaggaaggcagctactcaagatga 2705494 Score = 107 bits (54), Expect = 6e-20 Identities = 122/142 (85%), Gaps = 2/142 (1%) Strand = Plus / Minus Query: 78 gccgtgcggcgcgtgcaagttcctgcggcgcaagtgc-tcagcggagtgcgtgttcgcgc 136 ||||||||| ||||||||||||||||||||||||||| | ||||| |||| | ||||||| Sbjct: 7736026 gccgtgcggggcgtgcaagttcctgcggcgcaagtgcgtgagcgg-gtgcatcttcgcgc 7735968 Query: 137 cctacttctgcgcggaggacggggccgcgcagttcgcggccatccacaaggtgttcggcg 196 |||||||| | ||||| | || || ||||| |||||||| | |||||||||||||||| Sbjct: 7735967 cctacttcgactcggagcagggcgcggcgcacttcgcggcggtgcacaaggtgttcggcg 7735908 Query: 197 cgagcaacgcggccaagctgct 218 | ||||||| | |||||||||| Sbjct: 7735907 ccagcaacgtgtccaagctgct 7735886 Score = 99.6 bits (50), Expect = 2e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 343 gcgaccctgcagatgcaggtggcgcaggcgaagacgcaggtggcccagacgttggcggcg 402 ||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct: 2705237 gcgacgctgcaggtgcaggtggcgcaggcgaagacgcaggtggcgcagacgctggcggcg 2705296 Query: 403 gccggc 408 |||||| Sbjct: 2705297 gccggc 2705302 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 267 ctacgaggcgcaagccaggctgcgcgaccccatctacggctgcgtcgcccacatcttcgc 326 ||||||||| || ||| | || ||||||||| |||||||||||||||||||||||||||| Sbjct: 7735837 ctacgaggcccaggcccgcctccgcgaccccgtctacggctgcgtcgcccacatcttcgc 7735778 Query: 327 gctgcagcagcaggt 341 || ||||||||||| Sbjct: 7735777 cctccagcagcaggt 7735763