BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst030b02 (664 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CT828152.1| Oryza sativa (indica cultivar-group) cDNA clone:... 478 e-131 gb|AY581839.1| Cynodon dactylon putative histone H2B mRNA, parti... 478 e-131 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 478 e-131 gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 478 e-131 emb|CT837605.1| Oryza sativa (indica cultivar-group) cDNA clone:... 474 e-130 >emb|CT828152.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA028F12, full insert sequence Length = 704 Score = 478 bits (241), Expect = e-131 Identities = 300/319 (94%), Gaps = 3/319 (0%) Strand = Plus / Plus Query: 180 ccaaggagggcggcgcgg---acaagaaggggaagaagaaggccaagaagagcgtggaga 236 |||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |||| Sbjct: 233 ccaaggagggcggcgccggcgacaagaaggggaggaagaaggcgaagaagagcgtcgaga 292 Query: 237 cgtacaagatctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcct 296 | ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 293 cctacaagatctacatcttcaaggtcctgaagcaggtgcacccggacatcggaatctcct 352 Query: 297 ccaaggccatgtctatcatgaactccttcatcaacgacatcttcgagaagctcgcccagg 356 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 353 ccaaggccatgtcgatcatgaactccttcatcaacgacatcttcgagaagctcgcgcagg 412 Query: 357 aggccgcccgcctcgcccgctataacaagaagccaaccatcacctcccgcgagatccaga 416 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 413 aggccgcccgcctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccaga 472 Query: 417 cctcagtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcggagggcacca 476 |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 473 cctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacca 532 Query: 477 aggccgtcaccaagttcac 495 |||| |||||||||||||| Sbjct: 533 aggcggtcaccaagttcac 551 >gb|AY581839.1| Cynodon dactylon putative histone H2B mRNA, partial cds Length = 427 Score = 478 bits (241), Expect = e-131 Identities = 274/285 (96%) Strand = Plus / Plus Query: 211 gaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctcaagca 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 gaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctcaagca 63 Query: 271 ggtgcacccggacatcggcatctcctccaaggccatgtctatcatgaactccttcatcaa 330 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 64 ggtgcaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 123 Query: 331 cgacatcttcgagaagctcgcccaggaggccgcccgcctcgcccgctataacaagaagcc 390 ||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| Sbjct: 124 cgacatcttcgagaagctcgcgcaggaagccgcacgcctcgcccgctacaacaagaagcc 183 Query: 391 aaccatcacctcccgcgagatccagacctcagtgcgcctcgtcctccccggcgagctcgc 450 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 184 caccatcacctcccgcgagatccagacctcggtgcgcctcgtcctccccggcgagctcgc 243 Query: 451 caagcacgccgtctcggagggcaccaaggccgtcaccaagttcac 495 ||||||||||||||| ||||| || |||||||||||||||||||| Sbjct: 244 caagcacgccgtctccgagggaactaaggccgtcaccaagttcac 288 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 478 bits (241), Expect = e-131 Identities = 300/319 (94%), Gaps = 3/319 (0%) Strand = Plus / Plus Query: 180 ccaaggagggcggcgcgg---acaagaaggggaagaagaaggccaagaagagcgtggaga 236 |||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |||| Sbjct: 9463126 ccaaggagggcggcgccggcgacaagaaggggaggaagaaggcgaagaagagcgtcgaga 9463185 Query: 237 cgtacaagatctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcct 296 | ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 9463186 cctacaagatctacatcttcaaggtcctgaagcaggtgcacccggacatcggaatctcct 9463245 Query: 297 ccaaggccatgtctatcatgaactccttcatcaacgacatcttcgagaagctcgcccagg 356 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9463246 ccaaggccatgtcgatcatgaactccttcatcaacgacatcttcgagaagctcgcgcagg 9463305 Query: 357 aggccgcccgcctcgcccgctataacaagaagccaaccatcacctcccgcgagatccaga 416 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 9463306 aggccgcccgcctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccaga 9463365 Query: 417 cctcagtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcggagggcacca 476 |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 9463366 cctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacca 9463425 Query: 477 aggccgtcaccaagttcac 495 |||| |||||||||||||| Sbjct: 9463426 aggcggtcaccaagttcac 9463444 >gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 478 bits (241), Expect = e-131 Identities = 300/319 (94%), Gaps = 3/319 (0%) Strand = Plus / Plus Query: 180 ccaaggagggcggcgcgg---acaagaaggggaagaagaaggccaagaagagcgtggaga 236 |||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |||| Sbjct: 162405 ccaaggagggcggcgccggcgacaagaaggggaggaagaaggcgaagaagagcgtcgaga 162464 Query: 237 cgtacaagatctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcct 296 | ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 162465 cctacaagatctacatcttcaaggtcctgaagcaggtgcacccggacatcggaatctcct 162524 Query: 297 ccaaggccatgtctatcatgaactccttcatcaacgacatcttcgagaagctcgcccagg 356 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 162525 ccaaggccatgtcgatcatgaactccttcatcaacgacatcttcgagaagctcgcgcagg 162584 Query: 357 aggccgcccgcctcgcccgctataacaagaagccaaccatcacctcccgcgagatccaga 416 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 162585 aggccgcccgcctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccaga 162644 Query: 417 cctcagtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcggagggcacca 476 |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 162645 cctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacca 162704 Query: 477 aggccgtcaccaagttcac 495 |||| |||||||||||||| Sbjct: 162705 aggcggtcaccaagttcac 162723 >emb|CT837605.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA018O23, full insert sequence Length = 658 Score = 474 bits (239), Expect = e-130 Identities = 332/363 (91%) Strand = Plus / Plus Query: 142 ggagaagaaggagaaggcggagaagcgcgtccccggcgccaaggagggcggcgcggacaa 201 |||||||||| ||||| |||||||| || || ||||||||||||||||||| || || Sbjct: 149 ggagaagaagcccaaggccgagaagcgggtgccgggcgccaaggagggcggcggcgagaa 208 Query: 202 gaaggggaagaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggt 261 |||||||||||||||||||||||||||||| || || || ||||||||||| |||||||| Sbjct: 209 gaaggggaagaagaaggccaagaagagcgtcgaaacttataagatctacattttcaaggt 268 Query: 262 gctcaagcaggtgcacccggacatcggcatctcctccaaggccatgtctatcatgaactc 321 |||||||||||||| || || ||||| ||||| |||||||||||||| ||||||||||| Sbjct: 269 cctcaagcaggtgcatcccgatatcgggatctcgtccaaggccatgtcgatcatgaactc 328 Query: 322 cttcatcaacgacatcttcgagaagctcgcccaggaggccgcccgcctcgcccgctataa 381 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 329 gttcatcaacgatatcttcgagaagctcgcccaggaggccgcccgtctcgcccgctacaa 388 Query: 382 caagaagccaaccatcacctcccgcgagatccagacctcagtgcgcctcgtcctccccgg 441 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 389 caagaagccgaccatcacctcccgcgagatccagacctcggtgcgtctcgtcctccccgg 448 Query: 442 cgagctcgccaagcacgccgtctcggagggcaccaaggccgtcaccaagttcacgtcctc 501 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 449 cgagctcgccaagcacgccgtctctgagggcaccaaggccgtcaccaagttcacgtcgtc 508 Query: 502 tta 504 ||| Sbjct: 509 tta 511 Score = 87.7 bits (44), Expect = 5e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 97 gatggcgcccaaggccgagaagaagcccgcggagaagaagcccgtggagaagaagg 152 ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| Sbjct: 92 gatggcgcccaaggcggagaagaagcccgcggagaagaagccggtggaggagaagg 147