BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst029d18 (851 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AF135591.1|AF135591 Zea mays LIM transcription factor homolog... 735 0.0 gb|DQ246104.1| Zea mays clone 17550 mRNA sequence 716 0.0 gb|AY112454.1| Zea mays CL1239_1 mRNA sequence 700 0.0 emb|CT837642.1| Oryza sativa (indica cultivar-group) cDNA clone:... 496 e-137 ref|NM_001073396.1| Oryza sativa (japonica cultivar-group) Os12g... 375 e-100 >gb|AF135591.1|AF135591 Zea mays LIM transcription factor homolog (lim1) mRNA, complete cds Length = 930 Score = 735 bits (371), Expect = 0.0 Identities = 671/768 (87%), Gaps = 11/768 (1%) Strand = Plus / Plus Query: 59 atggcgacttcctttcaggggacgacgaccaagtgcacggcctgcaacaagacggtgtac 118 |||||||| ||||| ||||||||||| |||||| |||| |||||| |||||||||||||| Sbjct: 55 atggcgacctccttccaggggacgaccaccaagcgcaccgcctgcgacaagacggtgtac 114 Query: 119 ctggtcgacaagctcaccgccgacaaccgggtctaccacaaggcctgcttcaggtgccac 178 || || ||||||||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 115 cttgtggacaagctcaccgccgacaaccgcatctaccacaaggcctgcttccgctgccac 174 Query: 179 cattgcaagggcaccctcaagcttgcgaattacaactcgttcgaaggagtgctctactgc 238 || |||||||||||||||||||| || || |||||||| ||||| ||||||||||||||| Sbjct: 175 cactgcaagggcaccctcaagctcgccaactacaactccttcgagggagtgctctactgc 234 Query: 239 aggcctcactttgatcagctgttcaagaggactggaagcttggacaagagctttgaagga 298 ||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 235 aggcctcacttcgaccagctgttcaagaggacagggagcttggacaagagcttcgaagga 294 Query: 299 actccgaaggttgtcaagccagaaaaaaatgttgagaatgagaatgctattaaagtctca 358 ||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| Sbjct: 295 actccgaaggttgtcaagccagaaagaaacgttgggaatgagaatgctactaaagtctca 354 Query: 359 agcgcatttgctggcaccagagagaaatgtgttggatgcaacaagacagtctatccaatt 418 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 355 agcgcctttgctggcaccagagagaaatgtgttggatgcagcaagacagtctatccaact 414 Query: 419 gagagggttactgtcaataacactatgtaccacaagagctgcttcaagtgctgccatgga 478 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 gagagggtcactgttaacaacactatgtaccacaagagctgcttcaagtgctgccatgga 474 Query: 479 ggatgcaccatcagcccttcgaattacatcgcgcatgaggggaagctctactgcaagcac 538 || ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||| Sbjct: 475 gggtgcaccatcagcccttctaactacattgcgcacgaggggaagctgtactgcaagcac 534 Query: 539 catcatattcagctgatcaaagagaagggaaatttcagccaactcgagaacgatcatgat 598 || || || ||||||||||| || ||||| || |||||||| || ||||| || || || Sbjct: 535 caccacatccagctgatcaagga-aaggggaacttcagccagcttgagaatgaccacgag 593 Query: 599 aagacatcacaatcggctgggtcagtggaggatgaagaatcggagtattaatccttgagc 658 ||||||||||| |||||||||| ||||||| || ||| ||||||| ||| ||||| Sbjct: 594 aagacatcaca---ggctgggtcactggaggaggatgaacatgagtattgatcactgagc 650 Query: 659 atttccagagataaataatgagtcttcttgcatttcctccagagcactatatcttcccgt 718 | ||| |||| |||||||| || |||||||||||| | |||||||||| | || | || Sbjct: 651 acaaccacagatgaataatgaatcctcttgcatttcc-ctagagcactatgtatttctgt 709 Query: 719 ggcgcggttctttttcttcttcttttttcccaatgcaggtcatgtgcattcagagaacaa 778 |||| ||||| | ||| |||| |||||| |||||||||| |||||||||||| Sbjct: 710 ggcgtggttcgat------ttcagttttaccaatggaggtcatgtgtgttcagagaacaa 763 Query: 779 tgatgttattgtcttgtatctgcatgtagaccttgttatatttgagtc 826 |||| || |||||||||||||||||||| || ||||||| |||||||| Sbjct: 764 tgatattgttgtcttgtatctgcatgtaaacgttgttatctttgagtc 811 >gb|DQ246104.1| Zea mays clone 17550 mRNA sequence Length = 907 Score = 716 bits (361), Expect = 0.0 Identities = 567/635 (89%), Gaps = 3/635 (0%) Strand = Plus / Plus Query: 59 atggcgacttcctttcaggggacgacgaccaagtgcacggcctgcaacaagacggtgtac 118 |||||||| ||||| ||||||||||| ||||||||||| |||||| |||||||||||||| Sbjct: 97 atggcgacctccttccaggggacgaccaccaagtgcaccgcctgcgacaagacggtgtac 156 Query: 119 ctggtcgacaagctcaccgccgacaaccgggtctaccacaaggcctgcttcaggtgccac 178 || || ||||||||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 157 cttgtggacaagctcaccgccgacaaccgcatctaccacaaggcctgcttccgctgccac 216 Query: 179 cattgcaagggcaccctcaagcttgcgaattacaactcgttcgaaggagtgctctactgc 238 || |||||||||||||||||||| || || |||||||| ||||| ||||||||||||||| Sbjct: 217 cactgcaagggcaccctcaagctcgccaactacaactccttcgagggagtgctctactgc 276 Query: 239 aggcctcactttgatcagctgttcaagaggactggaagcttggacaagagctttgaagga 298 ||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 277 aggcctcacttcgaccagctgttcaagaggacagggagcttggacaagagcttcgaagga 336 Query: 299 actccgaaggttgtcaagccagaaaaaaatgttgagaatgagaatgctattaaagtctca 358 ||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| Sbjct: 337 actccgaaggttgtcaagccagaaagaaacgttgggaatgagaatgctactaaagtctca 396 Query: 359 agcgcatttgctggcaccagagagaaatgtgttggatgcaacaagacagtctatccaatt 418 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 397 agcgcctttgctggcaccagagagaaatgtgttggatgcagcaagacagtctatccaact 456 Query: 419 gagagggttactgtcaataacactatgtaccacaagagctgcttcaagtgctgccatgga 478 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 gagagggtcactgttaataacactatgtaccacaagagctgcttcaagtgctgccatgga 516 Query: 479 ggatgcaccatcagcccttcgaattacatcgcgcatgaggggaagctctactgcaagcac 538 || ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||| Sbjct: 517 gggtgcaccatcagcccttctaactacattgcgcacgaggggaagctgtactgcaagcac 576 Query: 539 catcatattcagctgatcaaagagaagggaaatttcagccaactcgagaacgatcatgat 598 || || || ||||||||||| |||||||| || |||||||| || ||||| || || || Sbjct: 577 caccacatccagctgatcaaggagaaggggaacttcagccagcttgagaatgaccacgag 636 Query: 599 aagacatcacaatcggctgggtcagtggaggatgaagaatcggagtattaatccttgagc 658 ||||||||||| |||||||||| ||||||| || ||| ||||||| ||| ||||| Sbjct: 637 aagacatcaca---ggctgggtcactggaggaggatgaacaagagtattgatcactgagc 693 Query: 659 atttccagagataaataatgagtcttcttgcattt 693 | ||| |||| |||||||| || |||||||||| Sbjct: 694 acaaccacagatgaataatgaatcctcttgcattt 728 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 743 ttttcccaatgcaggtcatgtgcattcagagaacaatgatgttattgtcttgtatctgca 802 |||| |||||| |||||||||| |||||||||||||||| || |||||||||||||||| Sbjct: 771 ttttaccaatggaggtcatgtgtgttcagagaacaatgatattgttgtcttgtatctgca 830 Query: 803 tgta 806 |||| Sbjct: 831 tgta 834 >gb|AY112454.1| Zea mays CL1239_1 mRNA sequence Length = 950 Score = 700 bits (353), Expect = 0.0 Identities = 565/635 (88%), Gaps = 3/635 (0%) Strand = Plus / Plus Query: 59 atggcgacttcctttcaggggacgacgaccaagtgcacggcctgcaacaagacggtgtac 118 |||||||| ||||| ||||||||||| |||||| |||| |||||| |||||||||||||| Sbjct: 75 atggcgacctccttccaggggacgaccaccaagcgcaccgcctgcgacaagacggtgtac 134 Query: 119 ctggtcgacaagctcaccgccgacaaccgggtctaccacaaggcctgcttcaggtgccac 178 || || ||||||||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 135 cttgtggacaagctcaccgccgacaaccgcatctaccacaaggcctgcttccgctgccac 194 Query: 179 cattgcaagggcaccctcaagcttgcgaattacaactcgttcgaaggagtgctctactgc 238 || |||||||||||||||||||| || || |||||||| ||||| ||||||||||||||| Sbjct: 195 cactgcaagggcaccctcaagctcgccaactacaactccttcgagggagtgctctactgc 254 Query: 239 aggcctcactttgatcagctgttcaagaggactggaagcttggacaagagctttgaagga 298 ||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 255 aggcctcacttcgaccagctgttcaagaggacagggagcttggacaagagcttcgaagga 314 Query: 299 actccgaaggttgtcaagccagaaaaaaatgttgagaatgagaatgctattaaagtctca 358 ||||| ||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| Sbjct: 315 actcccaaggttgtcaagccagaaagaaacgttgggaatgagaatgctactaaagtctca 374 Query: 359 agcgcatttgctggcaccagagagaaatgtgttggatgcaacaagacagtctatccaatt 418 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 375 agcgcctttgctggcaccagagagaaatgtgttggatgcagcaagacagtctatccaact 434 Query: 419 gagagggttactgtcaataacactatgtaccacaagagctgcttcaagtgctgccatgga 478 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 gagagggtcactgttaataacactatgtaccacaagagctgcttcaagtgctgccatgga 494 Query: 479 ggatgcaccatcagcccttcgaattacatcgcgcatgaggggaagctctactgcaagcac 538 || ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||| Sbjct: 495 gggtgcaccatcagcccttctaactacattgcgcacgaggggaagctgtactgcaagcac 554 Query: 539 catcatattcagctgatcaaagagaagggaaatttcagccaactcgagaacgatcatgat 598 || || || ||||||||||| |||||||| || |||||||| || ||||| || || || Sbjct: 555 caccacatccagctgatcaaggagaaggggaacttcagccagcttgagaatgaccacgag 614 Query: 599 aagacatcacaatcggctgggtcagtggaggatgaagaatcggagtattaatccttgagc 658 ||||||||||| |||||||||| ||||||| || ||| ||||||| ||| ||||| Sbjct: 615 aagacatcaca---ggctgggtcactggaggaggatgaacaagagtattgatcactgagc 671 Query: 659 atttccagagataaataatgagtcttcttgcattt 693 | ||| |||| |||||||| || |||||||||| Sbjct: 672 acaaccacagatgaataatgaatcctcttgcattt 706 Score = 95.6 bits (48), Expect = 3e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 743 ttttcccaatgcaggtcatgtgcattcagagaacaatgatgttattgtcttgtatctgca 802 |||| |||||| |||||||||| |||||||||||||||| || |||||||||||||||| Sbjct: 749 ttttaccaatggaggtcatgtgtgttcagagaacaatgatattgttgtcttgtatctgca 808 Query: 803 tgtagaccttgttatatttgagtc 826 |||| || ||||||| |||||||| Sbjct: 809 tgtaaacgttgttatctttgagtc 832 >emb|CT837642.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021C24, full insert sequence Length = 1180 Score = 496 bits (250), Expect = e-137 Identities = 289/302 (95%) Strand = Plus / Plus Query: 55 ggcaatggcgacttcctttcaggggacgacgaccaagtgcacggcctgcaacaagacggt 114 ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| Sbjct: 74 ggcaatggcgacttcctttcaggggacgacgaccaagtgcatggcgtgcgacaagacggt 133 Query: 115 gtacctggtcgacaagctcaccgccgacaaccgggtctaccacaaggcctgcttcaggtg 174 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 134 gtacctggtcgacaagctcaccgccgacaacagggtctaccacaaggcctgcttccggtg 193 Query: 175 ccaccattgcaagggcaccctcaagcttgcgaattacaactcgttcgaaggagtgctcta 234 ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| Sbjct: 194 ccaccattgcaagggcaccctcaagctcgcgaactacaactcgtttgaaggagtgctcta 253 Query: 235 ctgcaggcctcactttgatcagctgttcaagaggactggaagcttggacaagagctttga 294 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 254 ctgcaggcctcactttgatcagctgttcaagaggactggaagtttagacaagagctttga 313 Query: 295 aggaactccgaaggttgtcaagccagaaaaaaatgttgagaatgagaatgctattaaagt 354 ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 314 aggaactccaaaggttgtcaagccagaaaaaacagttgagaatgagaatgctattaaagt 373 Query: 355 ct 356 || Sbjct: 374 ct 375 >ref|NM_001073396.1| Oryza sativa (japonica cultivar-group) Os12g0510900 (Os12g0510900) mRNA, partial cds Length = 488 Score = 375 bits (189), Expect = e-100 Identities = 326/367 (88%), Gaps = 6/367 (1%) Strand = Plus / Plus Query: 341 aatgctattaaagtctcaagcgcatttgctggcaccagagagaaatgtgttggatgcaac 400 ||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 1 aatgctattaaagtctcgagcgcatttgctggcacgagagagaaatgcgtgggatgcaac 60 Query: 401 aagacagtctatccaattgagagggttactgtcaataacactatgtaccacaagagctgc 460 |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||| Sbjct: 61 aagacagtctatccaattgaaagggttactgtcaataacaccatgtatcacaaaagctgc 120 Query: 461 ttcaagtgctgccatggaggatgcaccatcagcccttcgaattacatcgcgcatgagggg 520 ||||||||||| ||||||||||||||||| ||||| || ||||||||||| || || ||| Sbjct: 121 ttcaagtgctgtcatggaggatgcaccattagcccctcaaattacatcgcacacgaaggg 180 Query: 521 aagctctactgcaagcaccatcatattcagctgatcaaagagaagggaaatttcagccaa 580 |||||||| ||||||||||| ||||||||| |||||||||||||||| || ||||||||| Sbjct: 181 aagctctattgcaagcaccaccatattcagttgatcaaagagaaggggaacttcagccaa 240 Query: 581 ctcgagaacgatcatgataagacatcacaatcggctgggtcagtggaggatgaagaatcg 640 || ||||| || ||||| ||| ||||||||| |||| || || ||||||||||| || Sbjct: 241 cttgagaatgaccatgagaaggcatcacaat---ctggatctgtagaggatgaagattca 297 Query: 641 gagtattaatcc-ttgag-catttccagagataaataatgagtcttcttgcatttcctcc 698 || ||||| ||| ||||| ||||||||||||||||||||| ||||||||| ||| |||| Sbjct: 298 gaatattagtcctttgagaaatttccagagataaataatga-tcttcttgcttttgctcc 356 Query: 699 agagcac 705 ||||||| Sbjct: 357 agagcac 363 Score = 79.8 bits (40), Expect = 2e-11 Identities = 78/88 (88%), Gaps = 2/88 (2%) Strand = Plus / Plus Query: 741 ttttttcccaatgcaggtcatgtgcattcagagaacaatgatgtta-ttgtcttgtatct 799 ||||||||||||| ||||||||||||||||||||||||| || ||| ||| |||||||| Sbjct: 392 ttttttcccaatgaaggtcatgtgcattcagagaacaataatattatttggcttgtatcc 451 Query: 800 gcatgt-agaccttgttatatttgagtc 826 || ||| | ||||||||||||| ||||| Sbjct: 452 gcttgtaaaaccttgttatattggagtc 479