BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst028j11
         (941 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AB260461.1| Oryza rufipogon DNA, locus RLD19, clone:19SNP99W...   145   4e-31
dbj|AB260459.1| Oryza rufipogon DNA, locus RLD19, clone:19SNP96W...   145   4e-31
dbj|AB260452.1| Oryza sativa (indica cultivar-group) DNA, locus ...   145   4e-31
dbj|AB260451.1| Oryza sativa (indica cultivar-group) DNA, locus ...   145   4e-31
dbj|AB260450.1| Oryza sativa (indica cultivar-group) DNA, locus ...   145   4e-31

>dbj|AB260461.1| Oryza rufipogon DNA, locus RLD19, clone:19SNP99W1965
          Length = 734

 Score =  145 bits (73), Expect = 4e-31
 Identities = 154/181 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 tcgatccatggaggtgcacgccgaggtagatgggccaggtgtgcccctggccgtgctcct 570
           |||||||||||||||||| |  ||||| |||||  | || ||||||||||| ||||||||
Sbjct: 464 tcgatccatggaggtgcagggagaggtggatggatcgggggtgcccctggcggtgctcct 523

                                                                       
Query: 571 gaagggagagctgtgtagctataaggtggagaagccggacattctgttcaaggaggcgaa 630
           |||| |||||||||| | | | |||||||||| ||||||||| ||||||   ||||||| 
Sbjct: 524 gaagcgagagctgtgcaaccagaaggtggagaggccggacatgctgttcggcgaggcgag 583

                                                                       
Query: 631 caagagctagaaaggggaggacttcacgcttctcatggccaagtcccaccgccgtccagg 690
           ||||||| |||||||||||||||||||| ||||| || |||||| |  ||||||||||||
Sbjct: 584 caagagcaagaaaggggaggacttcacgtttctcttgcccaagtgcagccgccgtccagg 643

            
Query: 691 t 691
           |
Sbjct: 644 t 644


>dbj|AB260459.1| Oryza rufipogon DNA, locus RLD19, clone:19SNP96W1956
          Length = 734

 Score =  145 bits (73), Expect = 4e-31
 Identities = 154/181 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 tcgatccatggaggtgcacgccgaggtagatgggccaggtgtgcccctggccgtgctcct 570
           |||||||||||||||||| |  ||||| |||||  | || ||||||||||| ||||||||
Sbjct: 464 tcgatccatggaggtgcagggagaggtggatggatcgggggtgcccctggcggtgctcct 523

                                                                       
Query: 571 gaagggagagctgtgtagctataaggtggagaagccggacattctgttcaaggaggcgaa 630
           |||| |||||||||| | | | |||||||||| ||||||||| ||||||   ||||||| 
Sbjct: 524 gaagcgagagctgtgcaaccagaaggtggagaggccggacatgctgttcggcgaggcgag 583

                                                                       
Query: 631 caagagctagaaaggggaggacttcacgcttctcatggccaagtcccaccgccgtccagg 690
           ||||||| |||||||||||||||||||| ||||| || |||||| |  ||||||||||||
Sbjct: 584 caagagcaagaaaggggaggacttcacgtttctcttgcccaagtgcagccgccgtccagg 643

            
Query: 691 t 691
           |
Sbjct: 644 t 644


>dbj|AB260452.1| Oryza sativa (indica cultivar-group) DNA, locus RLD19,
           clone:19SNP77_415
          Length = 734

 Score =  145 bits (73), Expect = 4e-31
 Identities = 154/181 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 tcgatccatggaggtgcacgccgaggtagatgggccaggtgtgcccctggccgtgctcct 570
           |||||||||||||||||| |  ||||| |||||  | || ||||||||||| ||||||||
Sbjct: 464 tcgatccatggaggtgcagggagaggtggatggatcgggggtgcccctggcggtgctcct 523

                                                                       
Query: 571 gaagggagagctgtgtagctataaggtggagaagccggacattctgttcaaggaggcgaa 630
           |||| |||||||||| | | | |||||||||| ||||||||| ||||||   ||||||| 
Sbjct: 524 gaagcgagagctgtgcaaccagaaggtggagaggccggacatgctgttcggcgaggcgag 583

                                                                       
Query: 631 caagagctagaaaggggaggacttcacgcttctcatggccaagtcccaccgccgtccagg 690
           ||||||| |||||||||||||||||||| ||||| || |||||| |  ||||||||||||
Sbjct: 584 caagagcaagaaaggggaggacttcacgtttctcttgcccaagtgcagccgccgtccagg 643

            
Query: 691 t 691
           |
Sbjct: 644 t 644


>dbj|AB260451.1| Oryza sativa (indica cultivar-group) DNA, locus RLD19,
           clone:19SNP71_101
          Length = 734

 Score =  145 bits (73), Expect = 4e-31
 Identities = 154/181 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 tcgatccatggaggtgcacgccgaggtagatgggccaggtgtgcccctggccgtgctcct 570
           |||||||||||||||||| |  ||||| |||||  | || ||||||||||| ||||||||
Sbjct: 464 tcgatccatggaggtgcagggagaggtggatggatcgggggtgcccctggcggtgctcct 523

                                                                       
Query: 571 gaagggagagctgtgtagctataaggtggagaagccggacattctgttcaaggaggcgaa 630
           |||| |||||||||| | | | |||||||||| ||||||||| ||||||   ||||||| 
Sbjct: 524 gaagcgagagctgtgcaaccagaaggtggagaggccggacatgctgttcggcgaggcgag 583

                                                                       
Query: 631 caagagctagaaaggggaggacttcacgcttctcatggccaagtcccaccgccgtccagg 690
           ||||||| |||||||||||||||||||| ||||| || |||||| |  ||||||||||||
Sbjct: 584 caagagcaagaaaggggaggacttcacgtttctcttgcccaagtgcagccgccgtccagg 643

            
Query: 691 t 691
           |
Sbjct: 644 t 644


>dbj|AB260450.1| Oryza sativa (indica cultivar-group) DNA, locus RLD19,
           clone:19SNP70IR36
          Length = 734

 Score =  145 bits (73), Expect = 4e-31
 Identities = 154/181 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 tcgatccatggaggtgcacgccgaggtagatgggccaggtgtgcccctggccgtgctcct 570
           |||||||||||||||||| |  ||||| |||||  | || ||||||||||| ||||||||
Sbjct: 464 tcgatccatggaggtgcagggagaggtggatggatcgggggtgcccctggcggtgctcct 523

                                                                       
Query: 571 gaagggagagctgtgtagctataaggtggagaagccggacattctgttcaaggaggcgaa 630
           |||| |||||||||| | | | |||||||||| ||||||||| ||||||   ||||||| 
Sbjct: 524 gaagcgagagctgtgcaaccagaaggtggagaggccggacatgctgttcggcgaggcgag 583

                                                                       
Query: 631 caagagctagaaaggggaggacttcacgcttctcatggccaagtcccaccgccgtccagg 690
           ||||||| |||||||||||||||||||| ||||| || |||||| |  ||||||||||||
Sbjct: 584 caagagcaagaaaggggaggacttcacgtttctcttgcccaagtgcagccgccgtccagg 643

            
Query: 691 t 691
           |
Sbjct: 644 t 644