BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst026p02 (907 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001059340.1| Oryza sativa (japonica cultivar-group) Os04g... 755 0.0 dbj|AK099153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 755 0.0 dbj|AK061355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 755 0.0 gb|AY336991.1| Oryza sativa (japonica cultivar-group) COP9 mRNA,... 474 e-130 emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 248 3e-62 >ref|NM_001059340.1| Oryza sativa (japonica cultivar-group) Os04g0428900 (Os04g0428900) mRNA, complete cds Length = 961 Score = 755 bits (381), Expect = 0.0 Identities = 546/601 (90%) Strand = Plus / Plus Query: 54 cctcctcctccgatggatctctccgccgtccacgacgccctctccgccaagtcctacttc 113 ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| | Sbjct: 68 cctcctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcc 127 Query: 114 gccctcgcccccctctgcgacgacctcctcctccaggccgcgtccctgggcgccgccacc 173 || ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 128 tccgtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccacc 187 Query: 174 gacgactggccctacgctgtccacctcctcgcccacctcttcctcaacgacctaaacagc 233 |||| |||||||||||| || ||||||||||||||||||| |||||||||||| |||||| Sbjct: 188 gacggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagc 247 Query: 234 gcgaggtttctttggaagtcggtgccgcaggaggtgaaggacgcgcggccggagctcgcc 293 ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 248 gcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgcc 307 Query: 294 gccgtctggaggatcggccagtgcctctggaaccgcgactacgctggggtctacacagcc 353 ||||||||||||||||| |||||||||||||||||||| ||||| || |||||| | ||| Sbjct: 308 gccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggcc 367 Query: 354 gtgcaggggttcgagtggggccctgaaatcgctgacttcatggccgccttcctagaaagc 413 | |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct: 368 gcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagc 427 Query: 414 tacagcaagaggatattccagctgttgacttctgcgtattccacaatcagtgttgcagat 473 ||||| |||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||| Sbjct: 428 tacagaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgat 487 Query: 474 gtgtctcacttcatggggatgaatgaggatgatgctactaataatgctgcgcaaaatggt 533 ||| ||||||||||||||||||||||||| ||||||||||| |||| |||||| ||| Sbjct: 488 gtggctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggt 547 Query: 534 tggattttggacgcggcagccaagatgcttactgtcagaaaaccaaaggttcagaccaac 593 |||| ||||| |||||||||| ||||||||||||| ||||||||||||| |||| ||| Sbjct: 548 tggagcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaac 607 Query: 594 cagaagctcgacgcaagcaaactgcagcgcttaactgaatgcgttttccacctggagcac 653 ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 608 cagaagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcac 667 Query: 654 t 654 | Sbjct: 668 t 668 >dbj|AK099153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069F08, full insert sequence Length = 947 Score = 755 bits (381), Expect = 0.0 Identities = 546/601 (90%) Strand = Plus / Plus Query: 54 cctcctcctccgatggatctctccgccgtccacgacgccctctccgccaagtcctacttc 113 ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| | Sbjct: 56 cctcctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcc 115 Query: 114 gccctcgcccccctctgcgacgacctcctcctccaggccgcgtccctgggcgccgccacc 173 || ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 116 tccgtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccacc 175 Query: 174 gacgactggccctacgctgtccacctcctcgcccacctcttcctcaacgacctaaacagc 233 |||| |||||||||||| || ||||||||||||||||||| |||||||||||| |||||| Sbjct: 176 gacggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagc 235 Query: 234 gcgaggtttctttggaagtcggtgccgcaggaggtgaaggacgcgcggccggagctcgcc 293 ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 236 gcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgcc 295 Query: 294 gccgtctggaggatcggccagtgcctctggaaccgcgactacgctggggtctacacagcc 353 ||||||||||||||||| |||||||||||||||||||| ||||| || |||||| | ||| Sbjct: 296 gccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggcc 355 Query: 354 gtgcaggggttcgagtggggccctgaaatcgctgacttcatggccgccttcctagaaagc 413 | |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct: 356 gcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagc 415 Query: 414 tacagcaagaggatattccagctgttgacttctgcgtattccacaatcagtgttgcagat 473 ||||| |||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||| Sbjct: 416 tacagaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgat 475 Query: 474 gtgtctcacttcatggggatgaatgaggatgatgctactaataatgctgcgcaaaatggt 533 ||| ||||||||||||||||||||||||| ||||||||||| |||| |||||| ||| Sbjct: 476 gtggctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggt 535 Query: 534 tggattttggacgcggcagccaagatgcttactgtcagaaaaccaaaggttcagaccaac 593 |||| ||||| |||||||||| ||||||||||||| ||||||||||||| |||| ||| Sbjct: 536 tggagcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaac 595 Query: 594 cagaagctcgacgcaagcaaactgcagcgcttaactgaatgcgttttccacctggagcac 653 ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 596 cagaagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcac 655 Query: 654 t 654 | Sbjct: 656 t 656 >dbj|AK061355.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H11, full insert sequence Length = 961 Score = 755 bits (381), Expect = 0.0 Identities = 546/601 (90%) Strand = Plus / Plus Query: 54 cctcctcctccgatggatctctccgccgtccacgacgccctctccgccaagtcctacttc 113 ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| | Sbjct: 68 cctcctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcc 127 Query: 114 gccctcgcccccctctgcgacgacctcctcctccaggccgcgtccctgggcgccgccacc 173 || ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 128 tccgtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccacc 187 Query: 174 gacgactggccctacgctgtccacctcctcgcccacctcttcctcaacgacctaaacagc 233 |||| |||||||||||| || ||||||||||||||||||| |||||||||||| |||||| Sbjct: 188 gacggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagc 247 Query: 234 gcgaggtttctttggaagtcggtgccgcaggaggtgaaggacgcgcggccggagctcgcc 293 ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 248 gcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgcc 307 Query: 294 gccgtctggaggatcggccagtgcctctggaaccgcgactacgctggggtctacacagcc 353 ||||||||||||||||| |||||||||||||||||||| ||||| || |||||| | ||| Sbjct: 308 gccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggcc 367 Query: 354 gtgcaggggttcgagtggggccctgaaatcgctgacttcatggccgccttcctagaaagc 413 | |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct: 368 gcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagc 427 Query: 414 tacagcaagaggatattccagctgttgacttctgcgtattccacaatcagtgttgcagat 473 ||||| |||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||| Sbjct: 428 tacagaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgat 487 Query: 474 gtgtctcacttcatggggatgaatgaggatgatgctactaataatgctgcgcaaaatggt 533 ||| ||||||||||||||||||||||||| ||||||||||| |||| |||||| ||| Sbjct: 488 gtggctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggt 547 Query: 534 tggattttggacgcggcagccaagatgcttactgtcagaaaaccaaaggttcagaccaac 593 |||| ||||| |||||||||| ||||||||||||| ||||||||||||| |||| ||| Sbjct: 548 tggagcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaac 607 Query: 594 cagaagctcgacgcaagcaaactgcagcgcttaactgaatgcgttttccacctggagcac 653 ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 608 cagaagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcac 667 Query: 654 t 654 | Sbjct: 668 t 668 >gb|AY336991.1| Oryza sativa (japonica cultivar-group) COP9 mRNA, complete cds Length = 616 Score = 474 bits (239), Expect = e-130 Identities = 326/355 (91%) Strand = Plus / Plus Query: 54 cctcctcctccgatggatctctccgccgtccacgacgccctctccgccaagtcctacttc 113 ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| | Sbjct: 55 cctcctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcc 114 Query: 114 gccctcgcccccctctgcgacgacctcctcctccaggccgcgtccctgggcgccgccacc 173 || ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 115 tccgtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccacc 174 Query: 174 gacgactggccctacgctgtccacctcctcgcccacctcttcctcaacgacctaaacagc 233 |||| |||||||||||| || ||||||||||||||||||| |||||||||||| |||||| Sbjct: 175 gacggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagc 234 Query: 234 gcgaggtttctttggaagtcggtgccgcaggaggtgaaggacgcgcggccggagctcgcc 293 ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 235 gcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgcc 294 Query: 294 gccgtctggaggatcggccagtgcctctggaaccgcgactacgctggggtctacacagcc 353 ||||||||||||||||| |||||||||||||||||||| ||||| || |||||| | ||| Sbjct: 295 gccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggcc 354 Query: 354 gtgcaggggttcgagtggggccctgaaatcgctgacttcatggccgccttcctag 408 | |||||||||||||||| ||||||||||||| |||||| ||||||||||||||| Sbjct: 355 gcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctag 409 >emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 248 bits (125), Expect = 3e-62 Identities = 167/181 (92%) Strand = Plus / Minus Query: 228 aacagcgcgaggtttctttggaagtcggtgccgcaggaggtgaaggacgcgcggccggag 287 ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 52121 aacagcgcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggag 52062 Query: 288 ctcgccgccgtctggaggatcggccagtgcctctggaaccgcgactacgctggggtctac 347 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 52061 ctcgccgccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctac 52002 Query: 348 acagccgtgcaggggttcgagtggggccctgaaatcgctgacttcatggccgccttccta 407 | |||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||| Sbjct: 52001 gcggccgcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttccta 51942 Query: 408 g 408 | Sbjct: 51941 g 51941 Score = 157 bits (79), Expect = 9e-35 Identities = 118/131 (90%) Strand = Plus / Minus Query: 524 gcaaaatggttggattttggacgcggcagccaagatgcttactgtcagaaaaccaaaggt 583 |||||| ||||||| ||||| |||||||||| ||||||||||||| |||||||||||| Sbjct: 49659 gcaaaacggttggagcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggt 49600 Query: 584 tcagaccaaccagaagctcgacgcaagcaaactgcagcgcttaactgaatgcgttttcca 643 | |||| |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| Sbjct: 49599 taagactaaccagaagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttcca 49540 Query: 644 cctggagcact 654 ||||||||||| Sbjct: 49539 cctggagcact 49529 Score = 151 bits (76), Expect = 6e-33 Identities = 100/108 (92%) Strand = Plus / Minus Query: 407 agaaagctacagcaagaggatattccagctgttgacttctgcgtattccacaatcagtgt 466 |||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||| || Sbjct: 51036 agaaagctacagaaagaggattttccagttgttgacttctgcatattccacaatcagcgt 50977 Query: 467 tgcagatgtgtctcacttcatggggatgaatgaggatgatgctactaa 514 ||| |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 50976 tgctgatgtggctcacttcatggggatgaatgaggaggatgctactaa 50929 Score = 121 bits (61), Expect = 5e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 54 cctcctcctccgatggatctctccgccgtccacgacgccctctccgccaagtcctacttc 113 ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| | Sbjct: 52497 cctcctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcc 52438 Query: 114 gccctcgcccccctctgcgacgacctcctcctccagg 150 || ||||||| ||||||||||||||| ||||||||| Sbjct: 52437 tccgtcgccccgctctgcgacgacctcttcctccagg 52401 Score = 119 bits (60), Expect = 2e-23 Identities = 75/80 (93%) Strand = Plus / Minus Query: 147 caggccgcgtccctgggcgccgccaccgacgactggccctacgctgtccacctcctcgcc 206 ||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||| Sbjct: 52313 caggccgcgtcccggggcgccgccaccgacggctggccctacgccgtgcacctcctcgcc 52254 Query: 207 cacctcttcctcaacgacct 226 ||||||| |||||||||||| Sbjct: 52253 cacctctacctcaacgacct 52234