BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst023e13
         (514 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)   283   3e-73
ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g...   281   1e-72
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...   281   1e-72
emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa...   281   1e-72
dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN...   281   1e-72

>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score =  283 bits (143), Expect = 3e-73
 Identities = 300/347 (86%), Gaps = 4/347 (1%)
 Strand = Plus / Plus

                                                                       
Query: 72  tttggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccct 131
           |||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||| |||||
Sbjct: 77  tttggcatctgagcccaacagctagcagatggcaggcggcagagttgcacatgcgaccct 136

                                                                       
Query: 132 caagggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctgg 191
           |||||| || ||||||||||||||||||| |||||||  ||||||||||||  |||||||
Sbjct: 137 caaggggccgagcgtggtgaaggagatcttcattggactcacccttgggctggttgctgg 196

                                                                       
Query: 192 tggtctgtggaagatgcatcact-gaacgagcagaggaagactagatccttctacgacat 250
           |||| |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||
Sbjct: 197 tggtatgtggaagatgcatcactggaacgagcagaggaagacccgatccttctacgacat 256

                                                                       
Query: 251 gcttgagaaggggcaaatcagcgtcgtcgttgaggagtagttttgatgtatcaaatctga 310
           ||| ||||||||||| ||||||||||| |||||||||||||| ||| ||    || | ||
Sbjct: 257 gctcgagaaggggcagatcagcgtcgttgttgaggagtagttctgacgtgctgaaccaga 316

                                                                       
Query: 311 agttctatatctc-aagtc-tttgcgtctttgtttttgccagtaatttccaaaactctct 368
           ||||||| ||| | ||||| |||||   || | |||||||||||||||   ||||||  |
Sbjct: 317 agttctacatcgcgaagtcttttgccatttcggttttgccagtaatttgtgaaactccgt 376

                                                          
Query: 369 ggagagcatgaca-agtgagtgccgtggagattgtgatgaaaataag 414
           ||||||||||||| ||||| | | ||||||||||| |||||||||||
Sbjct: 377 ggagagcatgacagagtgatttctgtggagattgtaatgaaaataag 423


>ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g0561000 (Os12g0561000)
           mRNA, complete cds
          Length = 495

 Score =  281 bits (142), Expect = 1e-72
 Identities = 200/218 (91%), Gaps = 1/218 (0%)
 Strand = Plus / Plus

                                                                       
Query: 75  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 134
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 55  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 114

                                                                       
Query: 135 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 194
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 115 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 174

                                                                       
Query: 195 tctgtggaagatgcatcact-gaacgagcagaggaagactagatccttctacgacatgct 253
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 234

                                                 
Query: 254 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 291
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 235 cgagaagggccagatcagtgttgtcgtcgaggagtagt 272


>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score =  281 bits (142), Expect = 1e-72
 Identities = 200/218 (91%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                            
Query: 75       ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 134
                |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 23003497 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 23003438

                                                                            
Query: 135      gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 194
                ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 23003437 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 23003378

                                                                            
Query: 195      tctgtggaagatgcatcact-gaacgagcagaggaagactagatccttctacgacatgct 253
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23003377 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 23003318

                                                      
Query: 254      tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 291
                 |||||||| || ||||| || ||||| ||||||||||
Sbjct: 23003317 cgagaagggccagatcagtgttgtcgtcgaggagtagt 23003280


>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  281 bits (142), Expect = 1e-72
 Identities = 200/218 (91%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                          
Query: 75     ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 134
              |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 112774 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 112715

                                                                          
Query: 135    gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 194
              ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 112714 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 112655

                                                                          
Query: 195    tctgtggaagatgcatcact-gaacgagcagaggaagactagatccttctacgacatgct 253
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 112654 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 112595

                                                    
Query: 254    tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 291
               |||||||| || ||||| || ||||| ||||||||||
Sbjct: 112594 cgagaagggccagatcagtgttgtcgtcgaggagtagt 112557


>dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c
           oxidase subunit 5c, complete cds
          Length = 533

 Score =  281 bits (142), Expect = 1e-72
 Identities = 200/218 (91%), Gaps = 1/218 (0%)
 Strand = Plus / Plus

                                                                       
Query: 75  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 134
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 74  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 133

                                                                       
Query: 135 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 194
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 134 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 193

                                                                       
Query: 195 tctgtggaagatgcatcact-gaacgagcagaggaagactagatccttctacgacatgct 253
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 253

                                                 
Query: 254 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 291
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 254 cgagaagggccagatcagtgttgtcgtcgaggagtagt 291