BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst020c05 (1387 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CT828695.1| Oryza sativa (indica cultivar-group) cDNA clone:... 291 4e-75 ref|NM_001059971.1| Oryza sativa (japonica cultivar-group) Os04g... 291 4e-75 dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 4e-75 gb|EF067844.1| Hordeum vulgare vrs1 locus, complete sequence; an... 264 9e-67 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 9e-36 >emb|CT828695.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104G24, full insert sequence Length = 1357 Score = 291 bits (147), Expect = 4e-75 Identities = 312/367 (85%) Strand = Plus / Plus Query: 789 cacaaggtgttatatggcctacacatatcaaccagaggccagattcggatttcaagagaa 848 ||||||||||||||||||| ||||||||||| || || ||||| ||||||||| | Sbjct: 683 cacaaggtgttatatggccggcacatatcaacagtagaccggattcagatttcaagcaga 742 Query: 849 ggttgatggaggttcttctcaaaccaattagccggagagaatatattaagctgttcgaca 908 |||| |||| | ||| ||||||| |||| || | ||||||||||||||| || |||| Sbjct: 743 ggttattggatgctctcagcaaaccatttagtcgaaaagaatatattaagctatttgaca 802 Query: 909 tggcttctattcgtactccattagtgaagttacgacaggttcgcaatgatgtgaagttct 968 |||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||||| Sbjct: 803 tggcttctattcgtacaccattagtaaaattacggcaggtgcgcaatgatgtaaagttct 862 Query: 969 accctacagatgagatgggcaattcgtattttgatcattacccagatcttgtcgaacaag 1028 |||||||| | || ||||| ||||| || |||||||||||||||||||| || || |||| Sbjct: 863 accctacacaggaaatgggaaattcatactttgatcattacccagatctcgttgaccaag 922 Query: 1029 ttacaaataccaccttctccaatggtttagctctgatgcgtgggtttttcttctggttgc 1088 ||| | || | ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 923 ttatgcacactagctttccaaatggtttagctctgatgcgtgggtttttcttctggttgc 982 Query: 1089 agaatactgcacatgaagatcaattcaggccatggatagatgattccaaagatcatgagg 1148 |||||| |||||||||||||||||||||||||||| | |||| ||| ||||| || |||| Sbjct: 983 agaataatgcacatgaagatcaattcaggccatgggttgatgtttctaaagaccacgagg 1042 Query: 1149 ttattcc 1155 ||||||| Sbjct: 1043 ttattcc 1049 Score = 161 bits (81), Expect = 9e-36 Identities = 211/253 (83%), Gaps = 6/253 (2%) Strand = Plus / Plus Query: 80 ttcccattcgccgacggcgactaccccgccgataagatcgatcccgactacctctatttc 139 ||||| ||||||| |||||| ||||||||||| || |||| |||||||||||||| ||| Sbjct: 73 ttccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttc 132 Query: 140 ctccgccacctccgtcccgacggcaactcctacgtcctcgagctcccgtccgatggcgcc 199 ||||||||| |||| ||||| ||| |||||||| |||||||||||| |||||||||| | Sbjct: 133 ctccgccacatccgccccgatggcgactcctacaccctcgagctcccctccgatggcgtc 192 Query: 200 tcccctccctccgtcctcaagtacga-gccccc-----catcgccacatccgacagcgaa 253 |||||||| ||| || | |||||||| |||||| || || || ||||| |||| Sbjct: 193 tcccctccttccctcgtgaagtacgaggcccccgccgacaccggcagcaccgacggcgag 252 Query: 254 tgcgtctccgacccctccccgggccgtgcaagcaccaaccgccggatggaagagaaggac 313 ||||||||||| |||||||| ||||| || ||||||||||||| | ||| |||||||| Sbjct: 253 tgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccggaggagaaggag 312 Query: 314 tcgtcggtggagg 326 ||||||||||||| Sbjct: 313 tcgtcggtggagg 325 Score = 107 bits (54), Expect = 1e-19 Identities = 87/98 (88%) Strand = Plus / Plus Query: 343 cccctcgtggctcgattccctcgtcgacatcgatgaggattaccgcctcttcctgcaaca 402 |||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| | || Sbjct: 345 cccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagca 404 Query: 403 cacgcgcgtggtgaatgaccgcatggtgctcgagattg 440 ||||||||||||||| ||| ||||||||||||||||| Sbjct: 405 cacgcgcgtggtgaacgacaacatggtgctcgagattg 442 >ref|NM_001059971.1| Oryza sativa (japonica cultivar-group) Os04g0539100 (Os04g0539100) mRNA, complete cds Length = 1351 Score = 291 bits (147), Expect = 4e-75 Identities = 312/367 (85%) Strand = Plus / Plus Query: 789 cacaaggtgttatatggcctacacatatcaaccagaggccagattcggatttcaagagaa 848 ||||||||||||||||||| ||||||||||| || || ||||| ||||||||| | Sbjct: 679 cacaaggtgttatatggccggcacatatcaacagtagaccggattcagatttcaagcaga 738 Query: 849 ggttgatggaggttcttctcaaaccaattagccggagagaatatattaagctgttcgaca 908 |||| |||| | ||| ||||||| |||| || | ||||||||||||||| || |||| Sbjct: 739 ggttattggatgctctcagcaaaccatttagtcgaaaagaatatattaagctatttgaca 798 Query: 909 tggcttctattcgtactccattagtgaagttacgacaggttcgcaatgatgtgaagttct 968 |||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||||| Sbjct: 799 tggcttctattcgtacaccattagtaaaattacggcaggtgcgcaatgatgtaaagttct 858 Query: 969 accctacagatgagatgggcaattcgtattttgatcattacccagatcttgtcgaacaag 1028 |||||||| | || ||||| ||||| || |||||||||||||||||||| || || |||| Sbjct: 859 accctacacaggaaatgggaaattcatactttgatcattacccagatctcgttgaccaag 918 Query: 1029 ttacaaataccaccttctccaatggtttagctctgatgcgtgggtttttcttctggttgc 1088 ||| | || | ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 919 ttatgcacactagctttccaaatggtttagctctgatgcgtgggtttttcttctggttgc 978 Query: 1089 agaatactgcacatgaagatcaattcaggccatggatagatgattccaaagatcatgagg 1148 |||||| |||||||||||||||||||||||||||| | |||| ||| ||||| || |||| Sbjct: 979 agaataatgcacatgaagatcaattcaggccatgggttgatgtttctaaagaccacgagg 1038 Query: 1149 ttattcc 1155 ||||||| Sbjct: 1039 ttattcc 1045 Score = 161 bits (81), Expect = 9e-36 Identities = 211/253 (83%), Gaps = 6/253 (2%) Strand = Plus / Plus Query: 80 ttcccattcgccgacggcgactaccccgccgataagatcgatcccgactacctctatttc 139 ||||| ||||||| |||||| ||||||||||| || |||| |||||||||||||| ||| Sbjct: 69 ttccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttc 128 Query: 140 ctccgccacctccgtcccgacggcaactcctacgtcctcgagctcccgtccgatggcgcc 199 ||||||||| |||| ||||| ||| |||||||| |||||||||||| |||||||||| | Sbjct: 129 ctccgccacatccgccccgatggcgactcctacaccctcgagctcccctccgatggcgtc 188 Query: 200 tcccctccctccgtcctcaagtacga-gccccc-----catcgccacatccgacagcgaa 253 |||||||| ||| || | |||||||| |||||| || || || ||||| |||| Sbjct: 189 tcccctccttccctcgtgaagtacgaggcccccgccgacaccggcagcaccgacggcgag 248 Query: 254 tgcgtctccgacccctccccgggccgtgcaagcaccaaccgccggatggaagagaaggac 313 ||||||||||| |||||||| ||||| || ||||||||||||| | ||| |||||||| Sbjct: 249 tgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccggaggagaaggag 308 Query: 314 tcgtcggtggagg 326 ||||||||||||| Sbjct: 309 tcgtcggtggagg 321 Score = 107 bits (54), Expect = 1e-19 Identities = 87/98 (88%) Strand = Plus / Plus Query: 343 cccctcgtggctcgattccctcgtcgacatcgatgaggattaccgcctcttcctgcaaca 402 |||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| | || Sbjct: 341 cccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagca 400 Query: 403 cacgcgcgtggtgaatgaccgcatggtgctcgagattg 440 ||||||||||||||| ||| ||||||||||||||||| Sbjct: 401 cacgcgcgtggtgaacgacaacatggtgctcgagattg 438 >dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full insert sequence Length = 1351 Score = 291 bits (147), Expect = 4e-75 Identities = 312/367 (85%) Strand = Plus / Plus Query: 789 cacaaggtgttatatggcctacacatatcaaccagaggccagattcggatttcaagagaa 848 ||||||||||||||||||| ||||||||||| || || ||||| ||||||||| | Sbjct: 679 cacaaggtgttatatggccggcacatatcaacagtagaccggattcagatttcaagcaga 738 Query: 849 ggttgatggaggttcttctcaaaccaattagccggagagaatatattaagctgttcgaca 908 |||| |||| | ||| ||||||| |||| || | ||||||||||||||| || |||| Sbjct: 739 ggttattggatgctctcagcaaaccatttagtcgaaaagaatatattaagctatttgaca 798 Query: 909 tggcttctattcgtactccattagtgaagttacgacaggttcgcaatgatgtgaagttct 968 |||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||||| Sbjct: 799 tggcttctattcgtacaccattagtaaaattacggcaggtgcgcaatgatgtaaagttct 858 Query: 969 accctacagatgagatgggcaattcgtattttgatcattacccagatcttgtcgaacaag 1028 |||||||| | || ||||| ||||| || |||||||||||||||||||| || || |||| Sbjct: 859 accctacacaggaaatgggaaattcatactttgatcattacccagatctcgttgaccaag 918 Query: 1029 ttacaaataccaccttctccaatggtttagctctgatgcgtgggtttttcttctggttgc 1088 ||| | || | ||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 919 ttatgcacactagctttccaaatggtttagctctgatgcgtgggtttttcttctggttgc 978 Query: 1089 agaatactgcacatgaagatcaattcaggccatggatagatgattccaaagatcatgagg 1148 |||||| |||||||||||||||||||||||||||| | |||| ||| ||||| || |||| Sbjct: 979 agaataatgcacatgaagatcaattcaggccatgggttgatgtttctaaagaccacgagg 1038 Query: 1149 ttattcc 1155 ||||||| Sbjct: 1039 ttattcc 1045 Score = 161 bits (81), Expect = 9e-36 Identities = 211/253 (83%), Gaps = 6/253 (2%) Strand = Plus / Plus Query: 80 ttcccattcgccgacggcgactaccccgccgataagatcgatcccgactacctctatttc 139 ||||| ||||||| |||||| ||||||||||| || |||| |||||||||||||| ||| Sbjct: 69 ttccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttc 128 Query: 140 ctccgccacctccgtcccgacggcaactcctacgtcctcgagctcccgtccgatggcgcc 199 ||||||||| |||| ||||| ||| |||||||| |||||||||||| |||||||||| | Sbjct: 129 ctccgccacatccgccccgatggcgactcctacaccctcgagctcccctccgatggcgtc 188 Query: 200 tcccctccctccgtcctcaagtacga-gccccc-----catcgccacatccgacagcgaa 253 |||||||| ||| || | |||||||| |||||| || || || ||||| |||| Sbjct: 189 tcccctccttccctcgtgaagtacgaggcccccgccgacaccggcagcaccgacggcgag 248 Query: 254 tgcgtctccgacccctccccgggccgtgcaagcaccaaccgccggatggaagagaaggac 313 ||||||||||| |||||||| ||||| || ||||||||||||| | ||| |||||||| Sbjct: 249 tgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccggaggagaaggag 308 Query: 314 tcgtcggtggagg 326 ||||||||||||| Sbjct: 309 tcgtcggtggagg 321 Score = 107 bits (54), Expect = 1e-19 Identities = 87/98 (88%) Strand = Plus / Plus Query: 343 cccctcgtggctcgattccctcgtcgacatcgatgaggattaccgcctcttcctgcaaca 402 |||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| | || Sbjct: 341 cccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagca 400 Query: 403 cacgcgcgtggtgaatgaccgcatggtgctcgagattg 440 ||||||||||||||| ||| ||||||||||||||||| Sbjct: 401 cacgcgcgtggtgaacgacaacatggtgctcgagattg 438 >gb|EF067844.1| Hordeum vulgare vrs1 locus, complete sequence; and Hox1 gene, complete cds Length = 518343 Score = 264 bits (133), Expect = 9e-67 Identities = 199/221 (90%) Strand = Plus / Minus Query: 793 aggtgttatatggcctacacatatcaaccagaggccagattcggatttcaagagaaggtt 852 |||||||||||||||| ||||||||||||| ||||||||||| || |||||| |||| || Sbjct: 471201 aggtgttatatggcctccacatatcaaccataggccagattcagacttcaagcgaagatt 471142 Query: 853 gatggaggttcttctcaaaccaattagccggagagaatatattaagctgttcgacatggc 912 |||||| | ||||| |||||| ||||||||| |||||||||||||||||| |||||||| Sbjct: 471141 gatggatgctcttcagaaaccatttagccggaaagaatatattaagctgtttgacatggc 471082 Query: 913 ttctattcgtactccattagtgaagttacgacaggttcgcaatgatgtgaagttctaccc 972 ||||||||||||||| ||||||||||| |||||||| |||||||||| || |||||||| Sbjct: 471081 ttctattcgtactcctttagtgaagttgcgacaggtgcgcaatgatgcaaaattctaccc 471022 Query: 973 tacagatgagatgggcaattcgtattttgatcattacccag 1013 ||| || |||||||||||||| ||||||||||||||||||| Sbjct: 471021 taccgaggagatgggcaattcatattttgatcattacccag 470981 Score = 202 bits (102), Expect = 3e-48 Identities = 231/274 (84%) Strand = Plus / Minus Query: 55 aacccctgcgatgcccgccctccccttcccattcgccgacggcgactaccccgccgataa 114 |||||| |||||||| ||||| ||| ||| ||||||| |||||||| | |||||||||| Sbjct: 472599 aacccccgcgatgccatccctctcctcccccttcgccgccggcgactgctccgccgataa 472540 Query: 115 gatcgatcccgactacctctatttcctccgccacctccgtcccgacggcaactcctacgt 174 | |||| |||||||||||||| || ||||||||||| || |||| |||| |||||| || Sbjct: 472539 gttcgaccccgactacctctactttctccgccaccttcgcaccgagggcagctcctatgt 472480 Query: 175 cctcgagctcccgtccgatggcgcctcccctccctccgtcctcaagtacgagccccccat 234 ||||||||||||| ||| || ||||||||| | ||||| ||| ||||||| ||||||| Sbjct: 472479 cctcgagctcccgcccggcggtgcctcccctgtccccgtcatcaggtacgagtcccccat 472420 Query: 235 cgccacatccgacagcgaatgcgtctccgacccctccccgggccgtgcaagcaccaaccg 294 | ||| |||||| ||||||| ||||| ||||| ||||||||| | |||||||||||||| Sbjct: 472419 ctccatctccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccg 472360 Query: 295 ccggatggaagagaaggactcgtcggtggaggcg 328 ||| |||||||| ||||||||| ||||||||| Sbjct: 472359 ccgagcggaagagagggactcgtccgtggaggcg 472326 Score = 147 bits (74), Expect = 1e-31 Identities = 145/169 (85%), Gaps = 6/169 (3%) Strand = Plus / Minus Query: 343 cccctcgtggctcgattccctcgtcgacatcgatgaggattaccgcctcttcctgcaaca 402 |||||||||| |||| ||| |||||||||| || |||||||||||||| |||||||| || Sbjct: 472323 cccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacca 472264 Query: 403 cacgcgcgtggtgaatgaccgcatggtgctcgagattgggggcgtcgttgtgaactacga 462 |||||||||||||||| ||||| || |||| |||| ||||||||||||||| |||| || Sbjct: 472263 cacgcgcgtggtgaataaccgcctgaagctccagatggggggcgtcgttgtggactatga 472204 Query: 463 g------ccggacgcagcgcggtctggaggtagcagcggggtcgaggag 505 | |||||||| |||| ||||||||||||||||||||||||||| Sbjct: 472203 gccggacccggacgccgcgcaatctggaggtagcagcggggtcgaggag 472155 Score = 103 bits (52), Expect = 2e-18 Identities = 73/80 (91%) Strand = Plus / Minus Query: 1011 cagatcttgtcgaacaagttacaaataccaccttctccaatggtttagctctgatgcgtg 1070 ||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||||| Sbjct: 470286 cagatcttgtcgaacaagttacaaacaataccttttccaagggtttagctttgatgcgtg 470227 Query: 1071 ggtttttcttctggttgcag 1090 | |||||||||||||||||| Sbjct: 470226 gatttttcttctggttgcag 470207 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 161 bits (81), Expect = 9e-36 Identities = 189/225 (84%) Strand = Plus / Minus Query: 789 cacaaggtgttatatggcctacacatatcaaccagaggccagattcggatttcaagagaa 848 ||||||||||||||||||| ||||||||||| || || ||||| ||||||||| | Sbjct: 26954296 cacaaggtgttatatggccggcacatatcaacagtagaccggattcagatttcaagcaga 26954237 Query: 849 ggttgatggaggttcttctcaaaccaattagccggagagaatatattaagctgttcgaca 908 |||| |||| | ||| ||||||| |||| || | ||||||||||||||| || |||| Sbjct: 26954236 ggttattggatgctctcagcaaaccatttagtcgaaaagaatatattaagctatttgaca 26954177 Query: 909 tggcttctattcgtactccattagtgaagttacgacaggttcgcaatgatgtgaagttct 968 |||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||||| Sbjct: 26954176 tggcttctattcgtacaccattagtaaaattacggcaggtgcgcaatgatgtaaagttct 26954117 Query: 969 accctacagatgagatgggcaattcgtattttgatcattacccag 1013 |||||||| | || ||||| ||||| || |||||||||||||||| Sbjct: 26954116 accctacacaggaaatgggaaattcatactttgatcattacccag 26954072 Score = 161 bits (81), Expect = 9e-36 Identities = 211/253 (83%), Gaps = 6/253 (2%) Strand = Plus / Minus Query: 80 ttcccattcgccgacggcgactaccccgccgataagatcgatcccgactacctctatttc 139 ||||| ||||||| |||||| ||||||||||| || |||| |||||||||||||| ||| Sbjct: 26955531 ttccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttc 26955472 Query: 140 ctccgccacctccgtcccgacggcaactcctacgtcctcgagctcccgtccgatggcgcc 199 ||||||||| |||| ||||| ||| |||||||| |||||||||||| |||||||||| | Sbjct: 26955471 ctccgccacatccgccccgatggcgactcctacaccctcgagctcccctccgatggcgtc 26955412 Query: 200 tcccctccctccgtcctcaagtacga-gccccc-----catcgccacatccgacagcgaa 253 |||||||| ||| || | |||||||| |||||| || || || ||||| |||| Sbjct: 26955411 tcccctccttccctcgtgaagtacgaggcccccgccgacaccggcagcaccgacggcgag 26955352 Query: 254 tgcgtctccgacccctccccgggccgtgcaagcaccaaccgccggatggaagagaaggac 313 ||||||||||| |||||||| ||||| || ||||||||||||| | ||| |||||||| Sbjct: 26955351 tgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccggaggagaaggag 26955292 Query: 314 tcgtcggtggagg 326 ||||||||||||| Sbjct: 26955291 tcgtcggtggagg 26955279 Score = 107 bits (54), Expect = 1e-19 Identities = 87/98 (88%) Strand = Plus / Minus Query: 343 cccctcgtggctcgattccctcgtcgacatcgatgaggattaccgcctcttcctgcaaca 402 |||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| | || Sbjct: 26955259 cccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagca 26955200 Query: 403 cacgcgcgtggtgaatgaccgcatggtgctcgagattg 440 ||||||||||||||| ||| ||||||||||||||||| Sbjct: 26955199 cacgcgcgtggtgaacgacaacatggtgctcgagattg 26955162 Score = 85.7 bits (43), Expect = 4e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 1085 ttgcagaatactgcacatgaagatcaattcaggccatggatagatgattccaaagatcat 1144 |||||||||| |||||||||||||||||||||||||||| | |||| ||| ||||| || Sbjct: 26952443 ttgcagaataatgcacatgaagatcaattcaggccatgggttgatgtttctaaagaccac 26952384 Query: 1145 gaggttattcc 1155 ||||||||||| Sbjct: 26952383 gaggttattcc 26952373 Score = 83.8 bits (42), Expect = 2e-12 Identities = 42/42 (100%) Strand = Plus / Minus Query: 1049 aatggtttagctctgatgcgtgggtttttcttctggttgcag 1090 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 26952964 aatggtttagctctgatgcgtgggtttttcttctggttgcag 26952923