BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst017k07 (1013 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|DQ019637.1| Triticum aestivum mRNA transport factor (Y14) mRN... 589 e-165 dbj|AK243594.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 484 e-133 ref|NM_001061133.1| Oryza sativa (japonica cultivar-group) Os05g... 482 e-132 gb|AY104163.1| Zea mays PCO106378 mRNA sequence 234 6e-58 gb|BT017264.1| Zea mays clone EL01N0309H05.c mRNA sequence 188 3e-44 >gb|DQ019637.1| Triticum aestivum mRNA transport factor (Y14) mRNA, complete cds Length = 978 Score = 589 bits (297), Expect = e-165 Identities = 544/626 (86%), Gaps = 9/626 (1%) Strand = Plus / Plus Query: 52 gcgatggcggcggcggcgatgaacgcggacgtggaggtggtagacttcgactccgacgac 111 |||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||| Sbjct: 59 gcgatggcggcggcggcgatgagcacggacgtggaggcggtcgacttcgactccgacgac 118 Query: 112 gacgacctcatggacgaggacgccggcaccgagccctcgccggcccccgctccccgcctc 171 ||||| |||||||||||||| | | || ||| |||||||| |||||||||||||||||| Sbjct: 119 gacgatctcatggacgaggagggtgccatcgaaccctcgcccgcccccgctccccgcctc 178 Query: 172 cgatccaccatcgcaggcggcggcggcggcgacgacgacgacggcccccgtaagaccaag 231 ||||| ||||||||||| |||||||||| |||||||||| | ||| |||||||| ||| Sbjct: 179 cgatctaccatcgcagggggcggcggcg---acgacgacgatgccccgcgtaagactaag 235 Query: 232 ggccgcggcttccgagaggaccctaactcc------gccccccgcgactcgcgcttagcg 285 || ||||||||||| ||||||||||||||| || | |||||||||||| ||||| Sbjct: 236 gggcgcggcttccgcgaggaccctaactcctcgtccgcgcaccgcgactcgcggttagct 295 Query: 286 ggcgcaggccgcgccgatttcgactccctcgcctccgatggcggccctggccccgtccgc 345 ||||| |||||| | | |||||| ||||||||||||||||||||||||| ||||| ||| Sbjct: 296 ggcgcgggccgctctggcttcgacgccctcgcctccgatggcggccctggacccgtgcgc 355 Query: 346 tccattgaagggtggattgtactggtcactggagttcacgaagaagcccaggaagatgac 405 |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||| Sbjct: 356 tccattgaagggtggattgtactggttactggagttcatgaagaagctcaggaggaggac 415 Query: 406 cttcacaatattttccgggaatacgggcaggtcaagaacttgcatttgaatttggatcgt 465 || || ||||||||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct: 416 ctccataatattttcggggattatgggcaggtcaagaacttgcatttgaatttggatcgc 475 Query: 466 cggactggatttgtcaagggatatgctctgattgaatatgagaactttgaggaagcccag 525 |||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 476 cggactggatttgtgaagggatatgctctaattgagtatgagaactttgagcaagccaag 535 Query: 526 gctgcaataaaagcattggatggaaccgagcttcttacacaattaataaatgttgattgg 585 |||||||| || || || ||||| ||||||||| | || |||||| |||||| ||| Sbjct: 536 cgtgcaataagagaatcagacggaactgagcttctttcgcagataataagtgttgactgg 595 Query: 586 gcatttagtattggccctgtcaaacgcagaaatactcagaagagatcaccgagaggtcat 645 |||||||||| |||||||||||| | |||| ||||| ||||||||||||||| | || Sbjct: 596 gcatttagtaatggccctgtcaaccagagaagtactcggaagagatcaccgaggcctaat 655 Query: 646 cgctcaaggagcccacccaggagaag 671 ||||||||||||||||| |||||||| Sbjct: 656 cgctcaaggagcccaccaaggagaag 681 >dbj|AK243594.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100084C05, full insert sequence Length = 927 Score = 484 bits (244), Expect = e-133 Identities = 521/610 (85%), Gaps = 20/610 (3%) Strand = Plus / Plus Query: 36 cccaaccccggcggcggcgatggcggcggcggcgatgaacgcggacgtggaggtggtaga 95 ||||||| ||||||||||| | ||| |||| || ||||| || ||||||| ||| || Sbjct: 69 cccaaccgcggcggcggcggcgatggctgcggtgaccaacgccgatgtggaggcggtcga 128 Query: 96 cttcgactccgacgacgacgacctcatggacgaggacgccggcaccgagccctcgccggc 155 ||||||| |||| |||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct: 129 cttcgaccccgatgacgacgacctcatggacgaggacgccg---ccgaccccacgccggc 185 Query: 156 ccccgctccccgcctccgatccaccatcgcaggcggcggcggcggcgacgacg------a 209 ||||| || |||||||| ||||||||||| |||||||||||||||| || || | Sbjct: 186 gcccgccccgcgcctccgctccaccatcgcgggcggcggcggcggcggcggcggcggcga 245 Query: 210 cgacggcccccgtaagaccaagggccgcggcttccgagaggaccctaactccgccccccg 269 |||||| | || ||||||||||||||||| ||||| || ||| | ||| ||||| Sbjct: 246 cgacgggcaacgcaagaccaagggccgcgggttccgcgacgacgc------cgcgccccg 299 Query: 270 cgactcgcgcttagcgggcgcaggccgcgcc---gatttcgactccctcgcctccgatgg 326 |||||| |||||||| ||||| || |||||| || ||||||||||||| |||||| || Sbjct: 300 cgactcccgcttagccggcgccgggcgcgcctccgacttcgactccctcggctccgacgg 359 Query: 327 cggccctggccccgtccgctccattgaagggtggattgtactggtcactggagttcacga 386 ||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||| || Sbjct: 360 tggccctggccccgtccgatccattgaaggatggattgtgctagtcactggggttcatga 419 Query: 387 agaagcccaggaagatgaccttcacaatattttccgggaatacgggcaggtcaagaactt 446 |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||| Sbjct: 420 agaagctcaggaagatgatcttcacaatattttccgggactttgggcaggtcaagaactt 479 Query: 447 gcatttgaatttggatcgtcggactggatttgtcaagggatatgctctgattgaatatga 506 |||||||||||||||||| || |||||||| || |||||||||||||| ||||| ||||| Sbjct: 480 gcatttgaatttggatcgccgaactggattcgtgaagggatatgctcttattgagtatga 539 Query: 507 gaacttt-gaggaagcccaggctgcaataaaagcattggatggaaccgagcttcttacac 565 |||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 540 -aactttcgaggaagctcaggctgcaataaaagcattggatggaactgagcttctaacac 598 Query: 566 aattaataaatgttgattgggcatttagtattggccctgtcaaacgcagaaatactcaga 625 || | |||| |||||||||||||||||||| |||||||||||| ||||| |||| || || Sbjct: 599 aaatcataagtgttgattgggcatttagtaatggccctgtcaagcgcaggaatattcgga 658 Query: 626 agagatcacc 635 |||||||||| Sbjct: 659 agagatcacc 668 >ref|NM_001061133.1| Oryza sativa (japonica cultivar-group) Os05g0140500 (Os05g0140500) mRNA, complete cds Length = 615 Score = 482 bits (243), Expect = e-132 Identities = 493/573 (86%), Gaps = 20/573 (3%) Strand = Plus / Plus Query: 73 aacgcggacgtggaggtggtagacttcgactccgacgacgacgacctcatggacgaggac 132 ||||| || ||||||| ||| ||||||||| |||| |||||||||||||||||||||||| Sbjct: 16 aacgccgatgtggaggcggtcgacttcgaccccgatgacgacgacctcatggacgaggac 75 Query: 133 gccggcaccgagccctcgccggcccccgctccccgcctccgatccaccatcgcaggcggc 192 |||| |||| ||| ||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct: 76 gccg---ccgaccccacgccggcgcccgccccgcgcctccgctccaccatcgcgggcggc 132 Query: 193 ggcggcggcgacgacg------acgacggcccccgtaagaccaagggccgcggcttccga 246 |||||||||| || || ||||||| | || ||||||||||||||||| ||||| Sbjct: 133 ggcggcggcggcggcggcggcgacgacgggcaacgcaagaccaagggccgcgggttccgc 192 Query: 247 gaggaccctaactccgccccccgcgactcgcgcttagcgggcgcaggccgcgcc---gat 303 || ||| | ||| ||||||||||| |||||||| ||||| || |||||| || Sbjct: 193 gacgacgc------cgcgccccgcgactcccgcttagccggcgccgggcgcgcctccgac 246 Query: 304 ttcgactccctcgcctccgatggcggccctggccccgtccgctccattgaagggtggatt 363 ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||| Sbjct: 247 ttcgactccctcggctccgacggtggccctggccccgtccgatccattgaaggatggatt 306 Query: 364 gtactggtcactggagttcacgaagaagcccaggaagatgaccttcacaatattttccgg 423 || || |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 307 gtgctagtcactggggttcatgaagaagctcaggaagatgatcttcacaatattttccgg 366 Query: 424 gaatacgggcaggtcaagaacttgcatttgaatttggatcgtcggactggatttgtcaag 483 || | ||||||||||||||||||||||||||||||||||| || |||||||| || ||| Sbjct: 367 gactttgggcaggtcaagaacttgcatttgaatttggatcgccgaactggattcgtgaag 426 Query: 484 ggatatgctctgattgaatatgagaacttt-gaggaagcccaggctgcaataaaagcatt 542 ||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||| Sbjct: 427 ggatatgctcttattgagtatga-aactttcgaggaagctcaggctgcaataaaagcatt 485 Query: 543 ggatggaaccgagcttcttacacaattaataaatgttgattgggcatttagtattggccc 602 ||||||||| |||||||| |||||| | |||| |||||||||||||||||||| |||||| Sbjct: 486 ggatggaactgagcttctaacacaaatcataagtgttgattgggcatttagtaatggccc 545 Query: 603 tgtcaaacgcagaaatactcagaagagatcacc 635 |||||| ||||| |||| || |||||||||||| Sbjct: 546 tgtcaagcgcaggaatattcggaagagatcacc 578 >gb|AY104163.1| Zea mays PCO106378 mRNA sequence Length = 1187 Score = 234 bits (118), Expect = 6e-58 Identities = 305/366 (83%), Gaps = 1/366 (0%) Strand = Plus / Plus Query: 324 tggcggccctggccccgtccgctccattgaagggtggattgtactggtcactggagttca 383 |||||||||||| ||| ||| || |||||||| |||||||| ||||||| |||||||| Sbjct: 378 tggcggccctggacccatccagtcaattgaaggatggattgtgttggtcacaggagttca 437 Query: 384 cgaagaagcccaggaagatgaccttcacaatattttccgggaatacgggcaggtcaagaa 443 ||||||||| || |||||||||||||| ||| ||||| |||| ||||||||||| || Sbjct: 438 cgaagaagctcaagaagatgaccttcaaaatgctttccaagaatttgggcaggtcaaaaa 497 Query: 444 cttgcatttgaatttggatcgtcggactggatttgtcaagggatatgctctgattgaata 503 | |||||||||||||||| || || || |||||||||||||| || ||| |||||||||| Sbjct: 498 cctgcatttgaatttggaccgccgtaccggatttgtcaaggggtacgctttgattgaata 557 Query: 504 tgagaactttgaggaagcccaggctgcaataaaagcattggatggaaccgagcttcttac 563 ||||| ||||| ||||| |||||||||||||||| | |||||||| | |||||| || Sbjct: 558 cgagaagtttgaagaagctcaggctgcaataaaagaactggatggagctgagctttataa 617 Query: 564 acaattaataaatgttgattgggcatttagtattggccctgtcaaacgcagaaatactca 623 |||| ||| | |||||||||||||||||| | |||||||| |||||||||||||||| Sbjct: 618 acaaagaatgagtgttgattgggcatttagcagtggccctgctaaacgcagaaatactcg 677 Query: 624 gaagagatcaccgagaggtcatcgctcaaggagcccacccaggagaagatactgagtgtt 683 ||| || ||||| | | ||| ||||||| ||||||||||||||| ||||| |||| Sbjct: 678 gaaaaggtcaccaccaagagctcgttcaaggaccccacccaggagaaggcactga-tgtt 736 Query: 684 tcccca 689 |||||| Sbjct: 737 tcccca 742 Score = 135 bits (68), Expect = 4e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 47 cggcggcgatggcggcggcggcgatgaacgcggacgtggaggtggtagacttcgactccg 106 |||||||||||||||||||||||| |||||| || ||||||||||| ||||||||| || Sbjct: 125 cggcggcgatggcggcggcggcgacgaacgccgatgtggaggtggtcgacttcgacctcg 184 Query: 107 acgacgacgacctcatggacgaggacgccggcaccgagccctcgccggcccccgctcccc 166 | ||||||||||||||||||||||||||||| | || || | ||| ||||||| ||| Sbjct: 185 atgacgacgacctcatggacgaggacgccgggccggatccagcaccgccccccgcctccc 244 Query: 167 gcctccgatccaccatcgcaggcg 190 ||||||| ||||||||||| |||| Sbjct: 245 gcctccgctccaccatcgcgggcg 268 >gb|BT017264.1| Zea mays clone EL01N0309H05.c mRNA sequence Length = 854 Score = 188 bits (95), Expect = 3e-44 Identities = 239/287 (83%) Strand = Plus / Plus Query: 349 attgaagggtggattgtactggtcactggagttcacgaagaagcccaggaagatgacctt 408 |||||||| |||||||| ||| |||||||||||| |||||||| || ||||||||||| Sbjct: 221 attgaaggatggattgtgttggccactggagttcatgaagaagctcaagaagatgacctc 280 Query: 409 cacaatattttccgggaatacgggcaggtcaagaacttgcatttgaatttggatcgtcgg 468 || ||| ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| Sbjct: 281 caaaatgctttccaagaatttgggcaggtcaaaaacctgcatttgaatttggaccgtcgt 340 Query: 469 actggatttgtcaagggatatgctctgattgaatatgagaactttgaggaagcccaggct 528 || |||||||||||||| || ||| |||||||||||||||| ||||| ||||| |||||| Sbjct: 341 accggatttgtcaaggggtacgctttgattgaatatgagaagtttgaagaagctcaggct 400 Query: 529 gcaataaaagcattggatggaaccgagcttcttacacaattaataaatgttgattgggca 588 |||||||||| | |||||||| | |||||| | |||| ||| | |||||||||||| Sbjct: 401 gcaataaaagaactggatggagctgagctttatgaacaaaaaatgagtgttgattgggcc 460 Query: 589 tttagtattggccctgtcaaacgcagaaatactcagaagagatcacc 635 ||||| | |||||||| || |||||| ||||| ||| |||||||| Sbjct: 461 tttagcagtggccctgctaagcgcagatttactcggaaaagatcacc 507