BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst016j23 (979 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001060808.1| Oryza sativa (japonica cultivar-group) Os04g... 254 6e-64 emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 254 6e-64 emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 254 6e-64 gb|AY461803.1| Oryza sativa (japonica cultivar-group) Dof28 mRNA... 254 6e-64 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 254 6e-64 >ref|NM_001060808.1| Oryza sativa (japonica cultivar-group) Os04g0678400 (Os04g0678400) mRNA, complete cds Length = 1096 Score = 254 bits (128), Expect = 6e-64 Identities = 184/202 (91%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 260 agcagcagctgctcgagtgcccgcggtgcggatccaccaacaccaagttctgctactaca 319 ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 271 agcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactaca 330 Query: 320 acaactacagcacggcgcagccgcgccacttctgccgcgcctgccgccgctactggacga 379 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 acaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgc 390 Query: 380 aggggggaacgctgcgcgacgtgccggtcgggggcgcct---gccgccgcggcggcaaca 436 | ||||| ||||| |||||||||||||| || ||||||| ||||| |||||||| || Sbjct: 391 acgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggca 450 Query: 437 agcggcgcagggtctccgccga 458 |||| ||||||||||||||||| Sbjct: 451 agcgccgcagggtctccgccga 472 Score = 81.8 bits (41), Expect = 5e-12 Identities = 111/133 (83%), Gaps = 6/133 (4%) Strand = Plus / Plus Query: 525 cttcccgttcctcagtgacggcatcttcttgccgcagttcgatctcg---gcgtcgcgcc 581 |||||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| Sbjct: 548 cttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgcc 607 Query: 582 ggcggcgttttcgtggccgtcggcggtcccggacttgtacg---gtgggctcgcgccgtg 638 ||| ||||| || ||| | ||||| ||||| ||||||||| | ||| |||||||||| Sbjct: 608 ggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtg 667 Query: 639 ggacgatggaacg 651 ||||||||||||| Sbjct: 668 ggacgatggaacg 680 >emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 254 bits (128), Expect = 6e-64 Identities = 184/202 (91%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 260 agcagcagctgctcgagtgcccgcggtgcggatccaccaacaccaagttctgctactaca 319 ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 89502 agcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactaca 89443 Query: 320 acaactacagcacggcgcagccgcgccacttctgccgcgcctgccgccgctactggacga 379 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89442 acaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgc 89383 Query: 380 aggggggaacgctgcgcgacgtgccggtcgggggcgcct---gccgccgcggcggcaaca 436 | ||||| ||||| |||||||||||||| || ||||||| ||||| |||||||| || Sbjct: 89382 acgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggca 89323 Query: 437 agcggcgcagggtctccgccga 458 |||| ||||||||||||||||| Sbjct: 89322 agcgccgcagggtctccgccga 89301 Score = 81.8 bits (41), Expect = 5e-12 Identities = 111/133 (83%), Gaps = 6/133 (4%) Strand = Plus / Minus Query: 525 cttcccgttcctcagtgacggcatcttcttgccgcagttcgatctcg---gcgtcgcgcc 581 |||||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| Sbjct: 89225 cttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgcc 89166 Query: 582 ggcggcgttttcgtggccgtcggcggtcccggacttgtacg---gtgggctcgcgccgtg 638 ||| ||||| || ||| | ||||| ||||| ||||||||| | ||| |||||||||| Sbjct: 89165 ggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtg 89106 Query: 639 ggacgatggaacg 651 ||||||||||||| Sbjct: 89105 ggacgatggaacg 89093 >emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 254 bits (128), Expect = 6e-64 Identities = 184/202 (91%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 260 agcagcagctgctcgagtgcccgcggtgcggatccaccaacaccaagttctgctactaca 319 ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 34598 agcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactaca 34539 Query: 320 acaactacagcacggcgcagccgcgccacttctgccgcgcctgccgccgctactggacga 379 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34538 acaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgc 34479 Query: 380 aggggggaacgctgcgcgacgtgccggtcgggggcgcct---gccgccgcggcggcaaca 436 | ||||| ||||| |||||||||||||| || ||||||| ||||| |||||||| || Sbjct: 34478 acgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggca 34419 Query: 437 agcggcgcagggtctccgccga 458 |||| ||||||||||||||||| Sbjct: 34418 agcgccgcagggtctccgccga 34397 Score = 81.8 bits (41), Expect = 5e-12 Identities = 111/133 (83%), Gaps = 6/133 (4%) Strand = Plus / Minus Query: 525 cttcccgttcctcagtgacggcatcttcttgccgcagttcgatctcg---gcgtcgcgcc 581 |||||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| Sbjct: 34321 cttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgcc 34262 Query: 582 ggcggcgttttcgtggccgtcggcggtcccggacttgtacg---gtgggctcgcgccgtg 638 ||| ||||| || ||| | ||||| ||||| ||||||||| | ||| |||||||||| Sbjct: 34261 ggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtg 34202 Query: 639 ggacgatggaacg 651 ||||||||||||| Sbjct: 34201 ggacgatggaacg 34189 >gb|AY461803.1| Oryza sativa (japonica cultivar-group) Dof28 mRNA, complete cds Length = 879 Score = 254 bits (128), Expect = 6e-64 Identities = 184/202 (91%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 260 agcagcagctgctcgagtgcccgcggtgcggatccaccaacaccaagttctgctactaca 319 ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 161 agcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactaca 220 Query: 320 acaactacagcacggcgcagccgcgccacttctgccgcgcctgccgccgctactggacga 379 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 acaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgc 280 Query: 380 aggggggaacgctgcgcgacgtgccggtcgggggcgcct---gccgccgcggcggcaaca 436 | ||||| ||||| |||||||||||||| || ||||||| ||||| |||||||| || Sbjct: 281 acgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggca 340 Query: 437 agcggcgcagggtctccgccga 458 |||| ||||||||||||||||| Sbjct: 341 agcgccgcagggtctccgccga 362 Score = 81.8 bits (41), Expect = 5e-12 Identities = 111/133 (83%), Gaps = 6/133 (4%) Strand = Plus / Plus Query: 525 cttcccgttcctcagtgacggcatcttcttgccgcagttcgatctcg---gcgtcgcgcc 581 |||||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| Sbjct: 438 cttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgcc 497 Query: 582 ggcggcgttttcgtggccgtcggcggtcccggacttgtacg---gtgggctcgcgccgtg 638 ||| ||||| || ||| | ||||| ||||| ||||||||| | ||| |||||||||| Sbjct: 498 ggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtg 557 Query: 639 ggacgatggaacg 651 ||||||||||||| Sbjct: 558 ggacgatggaacg 570 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 254 bits (128), Expect = 6e-64 Identities = 184/202 (91%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 260 agcagcagctgctcgagtgcccgcggtgcggatccaccaacaccaagttctgctactaca 319 ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 34691274 agcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactaca 34691215 Query: 320 acaactacagcacggcgcagccgcgccacttctgccgcgcctgccgccgctactggacga 379 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34691214 acaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgc 34691155 Query: 380 aggggggaacgctgcgcgacgtgccggtcgggggcgcct---gccgccgcggcggcaaca 436 | ||||| ||||| |||||||||||||| || ||||||| ||||| |||||||| || Sbjct: 34691154 acgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggca 34691095 Query: 437 agcggcgcagggtctccgccga 458 |||| ||||||||||||||||| Sbjct: 34691094 agcgccgcagggtctccgccga 34691073 Score = 81.8 bits (41), Expect = 5e-12 Identities = 111/133 (83%), Gaps = 6/133 (4%) Strand = Plus / Minus Query: 525 cttcccgttcctcagtgacggcatcttcttgccgcagttcgatctcg---gcgtcgcgcc 581 |||||||||||||||||||||| |||| |||||||||||| |||| |||| ||||| Sbjct: 34690997 cttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgcc 34690938 Query: 582 ggcggcgttttcgtggccgtcggcggtcccggacttgtacg---gtgggctcgcgccgtg 638 ||| ||||| || ||| | ||||| ||||| ||||||||| | ||| |||||||||| Sbjct: 34690937 ggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtg 34690878 Query: 639 ggacgatggaacg 651 ||||||||||||| Sbjct: 34690877 ggacgatggaacg 34690865