BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst012d12 (1267 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|DQ056237.1| Zea mays clone cp15 knotted 1-type homeobox prote... 402 e-108 gb|DQ056236.1| Zea mays clone 17A1 knotted 1-type homeobox prote... 398 e-107 ref|NM_001057942.1| Oryza sativa (japonica cultivar-group) Os03g... 317 6e-83 dbj|AK107296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 6e-83 dbj|AB028884.1| Oryza sativa mRNA for knotted1-type homeobox pro... 317 6e-83 >gb|DQ056237.1| Zea mays clone cp15 knotted 1-type homeobox protein 8 (knox8) mRNA, partial cds Length = 538 Score = 402 bits (203), Expect = e-108 Identities = 317/355 (89%) Strand = Plus / Plus Query: 695 gagatcgacccctgtgctgaggacaaggagctcaagcaccagcttctgaggaagtacggt 754 |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gagatcgatccctgcgccgaggacaaggagctcaagcaccagcttctgaggaagtacggc 60 Query: 755 ggctacttgggcaacctccggcaagaattttccaagcggaagaagaaagggaagctcccc 814 |||||| ||||| ||| || || || || |||||| ||||||||||||||||||||||| Sbjct: 61 ggctacctgggcggccttcgccaggagttctccaagaggaagaagaaagggaagctcccc 120 Query: 815 aaggaggccaggcagaagctgctgcactggtgggagctgcactacaagtggccgtatccc 874 |||||||| ||||||||| |||||||||||||||||||||||||||||||||| || || Sbjct: 121 aaggaggcgaggcagaagttgctgcactggtgggagctgcactacaagtggccctaccct 180 Query: 875 tctgagacggataagatcgcgctggcggagtcgacagggctggaccagaagcagattaac 934 ||||||||||| ||||| |||||||| ||| |||| |||||||||| ||||||||| ||| Sbjct: 181 tctgagacggagaagatggcgctggcagagacgaccgggctggacccgaagcagatcaac 240 Query: 935 aactggttcatcaaccagaggaagcggcactggaagccgacagcgggggacatgccgttc 994 |||||||||||||||||| |||||||||||||||||||| | | | ||||||||||||| Sbjct: 241 aactggttcatcaaccagcggaagcggcactggaagccggcgtcagaggacatgccgttc 300 Query: 995 tcgatgatggaaggcggcttccacgtcccgcagggcactgcggcactgtacatgg 1049 |||||||||| ||||| ||||||||| |||||||||| || || |||||||||| Sbjct: 301 gcgatgatggagggcgggttccacgtcgcgcagggcaccgcagcgctgtacatgg 355 >gb|DQ056236.1| Zea mays clone 17A1 knotted 1-type homeobox protein 8 (knox8) mRNA, partial cds Length = 584 Score = 398 bits (201), Expect = e-107 Identities = 365/419 (87%), Gaps = 3/419 (0%) Strand = Plus / Plus Query: 503 gacccggagctcgatcagttcatggaggcttactgcaacatgctggtgaagtactgcgag 562 |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 166 gacccggagctcgaccagttcatggaggcttactgcaacatgctggtgaagttccacgag 225 Query: 563 gagctcgcgcggccgatccaggaagccacggagttcttcaagagggtggagacgcagctc 622 ||| | ||||||||||||||||| || |||||||||||||| || |||||| ||||||| Sbjct: 226 gagatggcgcggccgatccaggaggcaacggagttcttcaacagcatggagaggcagctc 285 Query: 623 gattcca---tcactgacagtaactgcgaaggtgccggctcatcagaggatgaccaagac 679 | || | || | ||||||||||| || | ||||| || || |||||||| || ||| Sbjct: 286 ggctcgacgatctccgacagtaactgtgaggtcgccgggtcgtccgaggatgagcaggac 345 Query: 680 acgagctgtcctgaagagatcgacccctgtgctgaggacaaggagctcaagcaccagctt 739 ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 346 gcgagctgtcctgaggagatcgatccctgcgccgaggacaaggagctcaagcaccagctt 405 Query: 740 ctgaggaagtacggtggctacttgggcaacctccggcaagaattttccaagcggaagaag 799 |||||||||||||| |||||| ||||| ||| || || || || |||||| |||||||| Sbjct: 406 ctgaggaagtacggcggctacctgggcggccttcgccaggagttctccaagaggaagaag 465 Query: 800 aaagggaagctccccaaggaggccaggcagaagctgctgcactggtgggagctgcactac 859 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 466 aaagggaagctccccaaggaggcgaggcagaagttgctgcactggtgggagctgcactac 525 Query: 860 aagtggccgtatccctctgagacggataagatcgcgctggcggagtcgacagggctgga 918 |||||||| || || ||||||||||| ||||| |||||||| ||| |||| |||||||| Sbjct: 526 aagtggccctacccttctgagacggagaagatggcgctggcagagacgaccgggctgga 584 Score = 147 bits (74), Expect = 1e-31 Identities = 92/98 (93%) Strand = Plus / Plus Query: 351 cgcacccacagtactcggctctcctcgccgcctacttagactgccaaaaggtcgccgccc 410 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct: 2 cgcacccccagtactcggccctcctcgccgcctacttagactgccaaaaggtcggcgcgc 61 Query: 411 cgccggatgtgttggataggctctcggccgtggcggcg 448 |||||||||||| |||||||||||||||| |||||||| Sbjct: 62 cgccggatgtgtcggataggctctcggccatggcggcg 99 >ref|NM_001057942.1| Oryza sativa (japonica cultivar-group) Os03g0771500 (Os03g0771500) mRNA, complete cds Length = 1543 Score = 317 bits (160), Expect = 6e-83 Identities = 235/260 (90%) Strand = Plus / Plus Query: 716 gacaaggagctcaagcaccagcttctgaggaagtacggtggctacttgggcaacctccgg 775 |||||| |||| ||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct: 909 gacaagcagctgaagcaccagcttctgaggaagtacggtggctcgttgggcgatctccgg 968 Query: 776 caagaattttccaagcggaagaagaaagggaagctccccaaggaggccaggcagaagctg 835 || | || |||||| ||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 969 caggtgttctccaagaggaccaagaaagggaagcttcccaaggaggccaggcagaagctt 1028 Query: 836 ctgcactggtgggagctgcactacaagtggccgtatccctctgagacggataagatcgcg 895 |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| || Sbjct: 1029 ctgcactggtgggagctgcactacaagtggccctatccctccgagatggagaagatgacg 1088 Query: 896 ctggcggagtcgacagggctggaccagaagcagattaacaactggttcatcaaccagagg 955 |||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1089 ctggcgcagacgacggggctggaccagaagcagatcaacaactggttcatcaaccagagg 1148 Query: 956 aagcggcactggaagccgac 975 |||||||||||||||||||| Sbjct: 1149 aagcggcactggaagccgac 1168 Score = 131 bits (66), Expect = 8e-27 Identities = 144/170 (84%) Strand = Plus / Plus Query: 510 agctcgatcagttcatggaggcttactgcaacatgctggtgaagtactgcgaggagctcg 569 ||||||||||||||||||| || ||||||| ||||||| || |||| | |||||||| | Sbjct: 733 agctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctgg 792 Query: 570 cgcggccgatccaggaagccacggagttcttcaagagggtggagacgcagctcgattcca 629 ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 793 agcggccgatcctggaagccgcggagttcttcagcagggtggagacgcagctcgattcgc 852 Query: 630 tcactgacagtaactgcgaaggtgccggctcatcagaggatgaccaagac 679 || |||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct: 853 tcgctgagagtaattgtgaaggcacgggatcatcagaggaagagcaagac 902 Score = 105 bits (53), Expect = 4e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 332 gtcaaggctaagatcatgtcgcacccacagtactcggctctcctcgccgcctacttagac 391 |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 543 gtcaaggccgagatcatgtcgcatccacagtactcggctctcctagccgcctacttaggc 602 Query: 392 tgccaaaaggtcgccgccccgccggatgt 420 ||| ||||||||| || ||||||||||| Sbjct: 603 tgcaaaaaggtcggggcgccgccggatgt 631 >dbj|AK107296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C04, full insert sequence Length = 1407 Score = 317 bits (160), Expect = 6e-83 Identities = 235/260 (90%) Strand = Plus / Plus Query: 716 gacaaggagctcaagcaccagcttctgaggaagtacggtggctacttgggcaacctccgg 775 |||||| |||| ||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct: 738 gacaagcagctgaagcaccagcttctgaggaagtacggtggctcgttgggcgatctccgg 797 Query: 776 caagaattttccaagcggaagaagaaagggaagctccccaaggaggccaggcagaagctg 835 || | || |||||| ||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 798 caggtgttctccaagaggaccaagaaagggaagcttcccaaggaggccaggcagaagctt 857 Query: 836 ctgcactggtgggagctgcactacaagtggccgtatccctctgagacggataagatcgcg 895 |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| || Sbjct: 858 ctgcactggtgggagctgcactacaagtggccctatccctccgagatggagaagatgacg 917 Query: 896 ctggcggagtcgacagggctggaccagaagcagattaacaactggttcatcaaccagagg 955 |||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 918 ctggcgcagacgacggggctggaccagaagcagatcaacaactggttcatcaaccagagg 977 Query: 956 aagcggcactggaagccgac 975 |||||||||||||||||||| Sbjct: 978 aagcggcactggaagccgac 997 Score = 123 bits (62), Expect = 2e-24 Identities = 104/118 (88%) Strand = Plus / Plus Query: 510 agctcgatcagttcatggaggcttactgcaacatgctggtgaagtactgcgaggagctcg 569 ||||||||||||||||||| || ||||||| ||||||| || |||| | |||||||| | Sbjct: 577 agctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctgg 636 Query: 570 cgcggccgatccaggaagccacggagttcttcaagagggtggagacgcagctcgattc 627 ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 637 agcggccgatcctggaagccgcggagttcttcagcagggtggagacgcagctcgattc 694 Score = 105 bits (53), Expect = 4e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 332 gtcaaggctaagatcatgtcgcacccacagtactcggctctcctcgccgcctacttagac 391 |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 387 gtcaaggccgagatcatgtcgcatccacagtactcggctctcctagccgcctacttaggc 446 Query: 392 tgccaaaaggtcgccgccccgccggatgt 420 ||| ||||||||| || ||||||||||| Sbjct: 447 tgcaaaaaggtcggggcgccgccggatgt 475 >dbj|AB028884.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds Length = 1545 Score = 317 bits (160), Expect = 6e-83 Identities = 235/260 (90%) Strand = Plus / Plus Query: 716 gacaaggagctcaagcaccagcttctgaggaagtacggtggctacttgggcaacctccgg 775 |||||| |||| ||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct: 911 gacaagcagctgaagcaccagcttctgaggaagtacggtggctcgttgggcgatctccgg 970 Query: 776 caagaattttccaagcggaagaagaaagggaagctccccaaggaggccaggcagaagctg 835 || | || |||||| ||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 971 caggtgttctccaagaggaccaagaaagggaagcttcccaaggaggccaggcagaagctt 1030 Query: 836 ctgcactggtgggagctgcactacaagtggccgtatccctctgagacggataagatcgcg 895 |||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| || Sbjct: 1031 ctgcactggtgggagctgcactacaagtggccctatccctccgagatggagaagatgacg 1090 Query: 896 ctggcggagtcgacagggctggaccagaagcagattaacaactggttcatcaaccagagg 955 |||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1091 ctggcgcagacgacggggctggaccagaagcagatcaacaactggttcatcaaccagagg 1150 Query: 956 aagcggcactggaagccgac 975 |||||||||||||||||||| Sbjct: 1151 aagcggcactggaagccgac 1170 Score = 131 bits (66), Expect = 8e-27 Identities = 144/170 (84%) Strand = Plus / Plus Query: 510 agctcgatcagttcatggaggcttactgcaacatgctggtgaagtactgcgaggagctcg 569 ||||||||||||||||||| || ||||||| ||||||| || |||| | |||||||| | Sbjct: 735 agctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctgg 794 Query: 570 cgcggccgatccaggaagccacggagttcttcaagagggtggagacgcagctcgattcca 629 ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 795 agcggccgatcctggaagccgcggagttcttcagcagggtggagacgcagctcgattcgc 854 Query: 630 tcactgacagtaactgcgaaggtgccggctcatcagaggatgaccaagac 679 || |||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct: 855 tcgctgagagtaattgtgaaggcacgggatcatcagaggaagagcaagac 904 Score = 105 bits (53), Expect = 4e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 332 gtcaaggctaagatcatgtcgcacccacagtactcggctctcctcgccgcctacttagac 391 |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 545 gtcaaggccgagatcatgtcgcatccacagtactcggctctcctagccgcctacttaggc 604 Query: 392 tgccaaaaggtcgccgccccgccggatgt 420 ||| ||||||||| || ||||||||||| Sbjct: 605 tgcaaaaaggtcggggcgccgccggatgt 633