BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst011n17 (597 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 381 e-102 ref|NM_001065421.1| Oryza sativa (japonica cultivar-group) Os07g... 369 9e-99 dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 9e-99 dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96 emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 256 9e-65 >emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein Length = 575 Score = 381 bits (192), Expect = e-102 Identities = 373/431 (86%), Gaps = 3/431 (0%) Strand = Plus / Plus Query: 55 ctgcctctgtcatggcgtctctggctctgaaaccatctccatctccgttgctaggacggt 114 |||||| ||||||||| ||| ||||||||||||||||| | ||||| || || ||| | Sbjct: 31 ctgcctgtgtcatggcatctttggctctgaaaccatcttcctctcctctgttacaacgat 90 Query: 115 cgaagctcagaggcgcacggccatcagcaagaccgtcgttactcattatagccaa--agg 172 | ||||| |||||| || ||||| || || |||||||| |||| | ||||| ||| Sbjct: 91 ccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaagg 150 Query: 173 -gaagaagatccagacttctcaaccctacgggcctgctggaggagtggtattcaaggaag 231 ||||||| |||||||| | |||||||||||||||| ||| ||||||| |||||||||| Sbjct: 151 cgaagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaag 210 Query: 232 gtgttgatgcatctggaagggcagccacgggaaagggtctttaccagttttccaacaagt 291 | || ||||| |||||||||| ||||| ||| |||||| ||||||||||| || |||||| Sbjct: 211 gcgtcgatgcgtctggaagggtagccaaggggaagggtgtttaccagtttgccgacaagt 270 Query: 292 atggagcaaatgttgatgggtacagcccaatatacaccccagaagaatggtcttcaagtg 351 |||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||| Sbjct: 271 atggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaagtg 330 Query: 352 gtgatgtttatgttggaggaaagacagggctgtttctctgggcagtcactcttgctggaa 411 | || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 331 gcgacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctggaa 390 Query: 412 ttctgctgggcggggctcttcttgtctacaatactagtgccttggcttcttgaagcctag 471 ||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| Sbjct: 391 ttctgctgggcggtgctcttcttgtctacagtactagcgccttggcttcctgaagcctat 450 Query: 472 gtacagcaaac 482 || |||||||| Sbjct: 451 gtgcagcaaac 461 >ref|NM_001065421.1| Oryza sativa (japonica cultivar-group) Os07g0147500 (Os07g0147500) mRNA, complete cds Length = 775 Score = 369 bits (186), Expect = 9e-99 Identities = 255/278 (91%) Strand = Plus / Plus Query: 174 aagaagatccagacttctcaaccctacgggcctgctggaggagtggtattcaaggaaggt 233 |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 192 aagaagattcagacatcccagccctatgggcctgctggaggagtggtgttcaaggaaggt 251 Query: 234 gttgatgcatctggaagggcagccacgggaaagggtctttaccagttttccaacaagtat 293 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 252 gttgatgcatctggaagggtagccaagggaaagggtctttaccagttttccaacaagtat 311 Query: 294 ggagcaaatgttgatgggtacagcccaatatacaccccagaagaatggtcttcaagtggt 353 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 312 ggagcaaatgttgatgggtacagcccaatatataccccagaagaatggtcttcaactggt 371 Query: 354 gatgtttatgttggaggaaagacagggctgtttctctgggcagtcactcttgctggaatt 413 ||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||||| Sbjct: 372 gatgtctatgttggaggaaaggcaggtttacttctctgggcaatcactcttgctggaatt 431 Query: 414 ctgctgggcggggctcttcttgtctacaatactagtgc 451 || | ||||| ||| ||||||||||||| |||||||| Sbjct: 432 ctagttggcggcgctattcttgtctacaacactagtgc 469 Score = 95.6 bits (48), Expect = 2e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 34 agtgttgtcacatacaaatggctgcctctgtcatggcgtctctggctctgaaaccatctc 93 |||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 49 agtgttgttgcataaacatggctgcctctgtcatggcttctctggctctgaaaccatctg 108 Query: 94 catctccgttgctaggacggtcgaagct 121 ||||||| || |||| ||| |||||||| Sbjct: 109 catctccattactagaacgttcgaagct 136 >dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full insert sequence Length = 620 Score = 369 bits (186), Expect = 9e-99 Identities = 255/278 (91%) Strand = Plus / Plus Query: 174 aagaagatccagacttctcaaccctacgggcctgctggaggagtggtattcaaggaaggt 233 |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 193 aagaagattcagacatcccagccctatgggcctgctggaggagtggtgttcaaggaaggt 252 Query: 234 gttgatgcatctggaagggcagccacgggaaagggtctttaccagttttccaacaagtat 293 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 253 gttgatgcatctggaagggtagccaagggaaagggtctttaccagttttccaacaagtat 312 Query: 294 ggagcaaatgttgatgggtacagcccaatatacaccccagaagaatggtcttcaagtggt 353 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 313 ggagcaaatgttgatgggtacagcccaatatataccccagaagaatggtcttcaactggt 372 Query: 354 gatgtttatgttggaggaaagacagggctgtttctctgggcagtcactcttgctggaatt 413 ||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||||| Sbjct: 373 gatgtctatgttggaggaaaggcaggtttacttctctgggcaatcactcttgctggaatt 432 Query: 414 ctgctgggcggggctcttcttgtctacaatactagtgc 451 || | ||||| ||| ||||||||||||| |||||||| Sbjct: 433 ctagttggcggcgctattcttgtctacaacactagtgc 470 Score = 95.6 bits (48), Expect = 2e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 34 agtgttgtcacatacaaatggctgcctctgtcatggcgtctctggctctgaaaccatctc 93 |||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 50 agtgttgttgcataaacatggctgcctctgtcatggcttctctggctctgaaaccatctg 109 Query: 94 catctccgttgctaggacggtcgaagct 121 ||||||| || |||| ||| |||||||| Sbjct: 110 catctccattactagaacgttcgaagct 137 >dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full insert sequence Length = 777 Score = 361 bits (182), Expect = 2e-96 Identities = 254/278 (91%) Strand = Plus / Plus Query: 174 aagaagatccagacttctcaaccctacgggcctgctggaggagtggtattcaaggaaggt 233 |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||||||| Sbjct: 194 aagaagattcagacatcccagccctatgggcctgctggaggagtggtgttcaaggaaggt 253 Query: 234 gttgatgcatctggaagggcagccacgggaaagggtctttaccagttttccaacaagtat 293 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 254 gttgatgcatctggaagggtagccaagggaaagggtctttaccagttttccaacaagtat 313 Query: 294 ggagcaaatgttgatgggtacagcccaatatacaccccagaagaatggtcttcaagtggt 353 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 314 ggagcaaatgttgatgggtacagcccaatatataccccagaagaatggtcttcaactggt 373 Query: 354 gatgtttatgttggaggaaagacagggctgtttctctgggcagtcactcttgctggaatt 413 ||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||| | Sbjct: 374 gatgtctatgttggaggaaaggcaggtttacttctctgggcaatcactcttgctggaagt 433 Query: 414 ctgctgggcggggctcttcttgtctacaatactagtgc 451 || | ||||| ||| ||||||||||||| |||||||| Sbjct: 434 ctagttggcggcgctattcttgtctacaacactagtgc 471 Score = 95.6 bits (48), Expect = 2e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 34 agtgttgtcacatacaaatggctgcctctgtcatggcgtctctggctctgaaaccatctc 93 |||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 51 agtgttgttgcataaacatggctgcctctgtcatggcttctctggctctgaaaccatctg 110 Query: 94 catctccgttgctaggacggtcgaagct 121 ||||||| || |||| ||| |||||||| Sbjct: 111 catctccattactagaacgttcgaagct 138 >emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658 Length = 377 Score = 256 bits (129), Expect = 9e-65 Identities = 305/360 (84%), Gaps = 5/360 (1%) Strand = Plus / Plus Query: 55 ctgcctctgtcatggcgtctctggctctgaaaccatctccatctccgttgctaggacggt 114 |||||| ||||||||| ||| ||||||||||||||||| | ||||| || || ||| | Sbjct: 18 ctgcctgtgtcatggcatctttggctctgaaaccatcttcctctcctctgttacaacgat 77 Query: 115 cgaagctcagaggcgcacggccatcagcaagaccgtcgttactcattatagccaa--agg 172 | ||||| |||||| || ||||| || || |||||||| |||| | ||||| ||| Sbjct: 78 ccaagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaagg 137 Query: 173 -gaagaagatccagacttctcaaccctacgggcctgctggaggagtggtattcaaggaag 231 ||||||| |||||||| | |||||||||||||||| ||| ||||||| |||||||||| Sbjct: 138 cgaagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaag 197 Query: 232 gtgttgatgcatct-ggaagggcagccacgggaaagggtctttaccagtttt-ccaacaa 289 | || ||||| ||| ||||||| ||||| ||| |||||| |||||||||| || |||| Sbjct: 198 gcgtcgatgcgtcttggaagggtagccaaggggaagggtgtttaccagtthdnccgacaa 257 Query: 290 gtatggagcaaatgttgatgggtacagcccaatatacaccccagaagaatggtcttcaag 349 |||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||| Sbjct: 258 gtatggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaag 317 Query: 350 tggtgatgtttatgttggaggaaagacagggctgtttctctgggcagtcactcttgctgg 409 ||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 318 tggcgacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctgg 377