BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst010i17 (876 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein m... 396 e-107 ref|NM_001073782.1| Oryza sativa (japonica cultivar-group) Os12g... 325 2e-85 dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 2e-85 gb|AY112520.1| Zea mays CL889_1 mRNA sequence 276 1e-70 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 202 2e-48 >gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein mRNA, partial cds Length = 465 Score = 396 bits (200), Expect = e-107 Identities = 396/460 (86%), Gaps = 11/460 (2%) Strand = Plus / Plus Query: 124 tgccacgccgtcaccagcgcgtcgcctccagg-aatgg-agatggcgcagcttatatgcg 181 ||||| |||||||||| |||| |||||||||| ||||| | ||||| ||||||||||||| Sbjct: 5 tgccatgccgtcaccaacgcgccgcctccaggnaatggnaaatggctcagcttatatgcg 64 Query: 182 gtggctgtcgatctttattgatgtatactcgcaatgcaacgactgttaggtgctcatgtt 241 ||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||| Sbjct: 65 tcggctgtcgaactttattgatgtatactcgcaatgcaactactgtcagatgctcatgtt 124 Query: 242 gtgatacagtcaatcttgtcag---------gccagtgagcagcatagctcatgtgaact 292 ||||||||||||| |||| ||| |||||||| || |||||||||||||||| Sbjct: 125 gtgatacagtcaaccttgccagaccagcaccgccagtgaatagtatagctcatgtgaact 184 Query: 293 gtggccagtgccagacagtgttaatgtttccatatggagcaccttctgttaaatgtgcta 352 ||||||||||||| || |||||||||| ||||||||||||| |||| || |||||||||| Sbjct: 185 gtggccagtgccaaacggtgttaatgtatccatatggagcatcttcggtcaaatgtgcta 244 Query: 353 tatgcaattttattacgaatattggaatgaatactgtgagacctttgccacctacaatgc 412 | |||||||||||||| || ||||||||||| || ||||||||||||||||||||||||| Sbjct: 245 tctgcaattttattacaaacattggaatgaacaccgtgagacctttgccacctacaatgc 304 Query: 413 ctgcaccaaatggagcttcatatagtgtcccatcaacttccgctccaaccgctcgatcac 472 ||||||||| ||| ||| |||||||||||||| ||||| || ||| |||||| ||| | Sbjct: 305 atgcaccaaacggaatttcttatagtgtcccatcgacttctgcgccatccgctcaatcgc 364 Query: 473 agaatgtaactgttgttgtcgaaaatccgatgacagtagatgaaaagggaaaattggtga 532 |||||||||| || || |||||||| || |||||||||||||| ||||| |||||||||| Sbjct: 365 agaatgtaacggtggtcgtcgaaaacccaatgacagtagatgacaaggggaaattggtga 424 Query: 533 gcaatgttgcagttggggttacaactggtggtaaaaagta 572 |||| || | ||| ||||||||| | || || |||||||| Sbjct: 425 gcaacgtcgtagtcggggttacatccggcgggaaaaagta 464 >ref|NM_001073782.1| Oryza sativa (japonica cultivar-group) Os12g0611000 (Os12g0611000) mRNA, complete cds Length = 1180 Score = 325 bits (164), Expect = 2e-85 Identities = 319/370 (86%), Gaps = 3/370 (0%) Strand = Plus / Plus Query: 38 gaggcatgcagagccagatcgtgtgtcatgggtgcaggagcgttctactctaccccagag 97 ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||| |||| Sbjct: 210 gaggcatgcagagccagatcgtgtgccatgggtgcaggaacattctgctctacccgagag 269 Query: 98 gggcccctagcgtgtgctgcgcggtatgccacgccgtcaccagc---gcgtcgcctccag 154 |||| || ||||| ||||||||||| ||||| ||||| ||||| || || |||||| Sbjct: 270 gggcaccgagcgtttgctgcgcggtgtgccatgccgtgtccagcacagcaccgtctccag 329 Query: 155 gaatggagatggcgcagcttatatgcggtggctgtcgatctttattgatgtatactcgca 214 ||||||| || || || |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 330 gaatggatatagctcatcttatatgtggtggatgccgaactttattgatgtatactcgca 389 Query: 215 atgcaacgactgttaggtgctcatgttgtgatacagtcaatcttgtcaggccagtgagca 274 |||| || ||||||| || || || || |||||||||||||||||||| |||||||| | Sbjct: 390 atgcgacatctgttagatgttcgtgctgcgatacagtcaatcttgtcagaccagtgagta 449 Query: 275 gcatagctcatgtgaactgtggccagtgccagacagtgttaatgtttccatatggagcac 334 | |||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct: 450 gtatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcac 509 Query: 335 cttctgttaaatgtgctatatgcaattttattacgaatattggaatgaatactgtgagac 394 ||||||| || |||||||| |||||||||||||| |||| ||| |||||||| |||||| Sbjct: 510 cttctgtcaagtgtgctatctgcaattttattacaaatactgggatgaatacaatgagac 569 Query: 395 ctttgccacc 404 ||||||||| Sbjct: 570 atttgccacc 579 Score = 321 bits (162), Expect = 3e-84 Identities = 387/453 (85%), Gaps = 13/453 (2%) Strand = Plus / Plus Query: 416 caccaaatggagcttcatatagtgtcccatcaacttccgctccaaccgctcgatcacaga 475 ||||||||||| ||||||||| || ||||||||| || ||||||||| ||| |||||||| Sbjct: 576 caccaaatggaacttcatatactgccccatcaacctctgctccaaccactcaatcacaga 635 Query: 476 atgtaactgttgttgtcgaaaatccgatgacagtagatgaaaagggaaaattggtgagca 535 |||| ||||||||||| |||||||| ||||| ||||||| ||||||||| |||||||||| Sbjct: 636 atgttactgttgttgttgaaaatcctatgacggtagatgcaaagggaaagttggtgagca 695 Query: 536 atgttgcagttggggttacaactggtggtaaaaagtaacatattagcacaccagtgcagc 595 | |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct: 696 acgttgtagttggggttacaactggtggtaaaaagtaacatattggcaca-cagtgca-c 753 Query: 596 cttgttttatgttttatatctggagttggaaatactttgtattat--actgctgtttggt 653 ||||||||||||| |||| ||||||||||||||||||||||||| || ||||| || Sbjct: 754 cttgttttatgttccatatatggagttggaaatactttgtattatacacaaatgttt-gt 812 Query: 654 gatcggttgctcgaaggaaccctcaagagcataatggcacgcgcagtgtg--cctttacg 711 |||| ||||| ||||||||||| ||||||||| ||||| |||| |||| | |||| Sbjct: 813 gatcaattgctggaaggaaccctgaagagcataggggcactcgcaatgtgcacaattaca 872 Query: 712 atcacgc---caaaacaaagtgcgggtgtggatactgagaaattgtagtttgttaccctt 768 |||| || |||||||| ||| |||||| ||||||||| | ||||||||||||||| | Sbjct: 873 atcaagctaaaaaaacaaactgcaggtgtgaatactgagatactgtagtttgttacccct 932 Query: 769 gattcttttgtatgtaacat--gagctctgtttagactttactgtgtgatgaaatcctgt 826 ||||||||||||||||| || |||||||| || || |||| |||||||| ||||| | | Sbjct: 933 gattcttttgtatgtaatatgagagctctg-ttggattttattgtgtgatcaaatcatct 991 Query: 827 cctgatgtctctctctgccttctcaatgaataa 859 || |||| | || ||||||||||||||||||| Sbjct: 992 ccagatggcactagctgccttctcaatgaataa 1024 >dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full insert sequence Length = 1182 Score = 325 bits (164), Expect = 2e-85 Identities = 319/370 (86%), Gaps = 3/370 (0%) Strand = Plus / Plus Query: 38 gaggcatgcagagccagatcgtgtgtcatgggtgcaggagcgttctactctaccccagag 97 ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||| |||| Sbjct: 211 gaggcatgcagagccagatcgtgtgccatgggtgcaggaacattctgctctacccgagag 270 Query: 98 gggcccctagcgtgtgctgcgcggtatgccacgccgtcaccagc---gcgtcgcctccag 154 |||| || ||||| ||||||||||| ||||| ||||| ||||| || || |||||| Sbjct: 271 gggcaccgagcgtttgctgcgcggtgtgccatgccgtgtccagcacagcaccgtctccag 330 Query: 155 gaatggagatggcgcagcttatatgcggtggctgtcgatctttattgatgtatactcgca 214 ||||||| || || || |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 331 gaatggatatagctcatcttatatgtggtggatgccgaactttattgatgtatactcgca 390 Query: 215 atgcaacgactgttaggtgctcatgttgtgatacagtcaatcttgtcaggccagtgagca 274 |||| || ||||||| || || || || |||||||||||||||||||| |||||||| | Sbjct: 391 atgcgacatctgttagatgttcgtgctgcgatacagtcaatcttgtcagaccagtgagta 450 Query: 275 gcatagctcatgtgaactgtggccagtgccagacagtgttaatgtttccatatggagcac 334 | |||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct: 451 gtatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcac 510 Query: 335 cttctgttaaatgtgctatatgcaattttattacgaatattggaatgaatactgtgagac 394 ||||||| || |||||||| |||||||||||||| |||| ||| |||||||| |||||| Sbjct: 511 cttctgtcaagtgtgctatctgcaattttattacaaatactgggatgaatacaatgagac 570 Query: 395 ctttgccacc 404 ||||||||| Sbjct: 571 atttgccacc 580 Score = 321 bits (162), Expect = 3e-84 Identities = 387/453 (85%), Gaps = 13/453 (2%) Strand = Plus / Plus Query: 416 caccaaatggagcttcatatagtgtcccatcaacttccgctccaaccgctcgatcacaga 475 ||||||||||| ||||||||| || ||||||||| || ||||||||| ||| |||||||| Sbjct: 577 caccaaatggaacttcatatactgccccatcaacctctgctccaaccactcaatcacaga 636 Query: 476 atgtaactgttgttgtcgaaaatccgatgacagtagatgaaaagggaaaattggtgagca 535 |||| ||||||||||| |||||||| ||||| ||||||| ||||||||| |||||||||| Sbjct: 637 atgttactgttgttgttgaaaatcctatgacggtagatgcaaagggaaagttggtgagca 696 Query: 536 atgttgcagttggggttacaactggtggtaaaaagtaacatattagcacaccagtgcagc 595 | |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct: 697 acgttgtagttggggttacaactggtggtaaaaagtaacatattggcaca-cagtgca-c 754 Query: 596 cttgttttatgttttatatctggagttggaaatactttgtattat--actgctgtttggt 653 ||||||||||||| |||| ||||||||||||||||||||||||| || ||||| || Sbjct: 755 cttgttttatgttccatatatggagttggaaatactttgtattatacacaaatgttt-gt 813 Query: 654 gatcggttgctcgaaggaaccctcaagagcataatggcacgcgcagtgtg--cctttacg 711 |||| ||||| ||||||||||| ||||||||| ||||| |||| |||| | |||| Sbjct: 814 gatcaattgctggaaggaaccctgaagagcataggggcactcgcaatgtgcacaattaca 873 Query: 712 atcacgc---caaaacaaagtgcgggtgtggatactgagaaattgtagtttgttaccctt 768 |||| || |||||||| ||| |||||| ||||||||| | ||||||||||||||| | Sbjct: 874 atcaagctaaaaaaacaaactgcaggtgtgaatactgagatactgtagtttgttacccct 933 Query: 769 gattcttttgtatgtaacat--gagctctgtttagactttactgtgtgatgaaatcctgt 826 ||||||||||||||||| || |||||||| || || |||| |||||||| ||||| | | Sbjct: 934 gattcttttgtatgtaatatgagagctctg-ttggattttattgtgtgatcaaatcatct 992 Query: 827 cctgatgtctctctctgccttctcaatgaataa 859 || |||| | || ||||||||||||||||||| Sbjct: 993 ccagatggcactagctgccttctcaatgaataa 1025 >gb|AY112520.1| Zea mays CL889_1 mRNA sequence Length = 1158 Score = 276 bits (139), Expect = 1e-70 Identities = 292/343 (85%) Strand = Plus / Plus Query: 35 cttgaggcatgcagagccagatcgtgtgtcatgggtgcaggagcgttctactctacccca 94 |||||| ||||||||||||||| ||||| || |||||||||| | |||| ||||||| | Sbjct: 129 cttgagacatgcagagccagatagtgtgccacgggtgcaggacccttctgttctacccaa 188 Query: 95 gaggggcccctagcgtgtgctgcgcggtatgccacgccgtcaccagcgcgtcgcctccag 154 |||| || || |||||||| || ||||||||||| | ||||||| | | ||||||||| Sbjct: 189 gaggtgctccgagcgtgtgttgtgcggtatgccatgtggtcaccaatgtgccgcctccag 248 Query: 155 gaatggagatggcgcagcttatatgcggtggctgtcgatctttattgatgtatactcgca 214 |||||||||||| | |||||||| |||||||| | | |||||||||||| |||||| Sbjct: 249 caatggagatggctcgacttatatgtggtggctgccagacattattgatgtatgctcgca 308 Query: 215 atgcaacgactgttaggtgctcatgttgtgatacagtcaatcttgtcaggccagtgagca 274 |||||| ||||| || |||||||||||||| ||||||||||||||||| |||||||| | Sbjct: 309 gtgcaacaactgtaagatgctcatgttgtgacacagtcaatcttgtcagaccagtgagta 368 Query: 275 gcatagctcatgtgaactgtggccagtgccagacagtgttaatgtttccatatggagcac 334 ||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||| Sbjct: 369 gcatagctcatgtgaactgtggccagtgccaaacagtgttgatgtatccatacggagcac 428 Query: 335 cttctgttaaatgtgctatatgcaattttattacgaatattgg 377 | ||||| ||||||||| | ||||| || ||||| ||| |||| Sbjct: 429 cgtctgtcaaatgtgctgtttgcaacttcattacaaatgttgg 471 Score = 97.6 bits (49), Expect = 7e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 474 gaatgtaactgttgttgtcgaaaatccgatgacagtagatgaaaagggaaaattggtgag 533 ||||||||||||||| || ||||| || |||||||||||||| ||||||||||||||||| Sbjct: 574 gaatgtaactgttgtcgttgaaaacccaatgacagtagatgacaagggaaaattggtgag 633 Query: 534 caatgttgcagttggggttac 554 |||||| | ||| |||||||| Sbjct: 634 caatgtcgtagtaggggttac 654 >dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 202 bits (102), Expect = 2e-48 Identities = 288/341 (84%), Gaps = 13/341 (3%) Strand = Plus / Minus Query: 528 ggtgagcaatgttgcagttggggttacaactggtggtaaaaagtaacatattagcacacc 587 ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 25849325 ggtgagcaacgttgtagttggggttacaactggtggtaaaaagtaacatattggcaca-c 25849267 Query: 588 agtgcagccttgttttatgttttatatctggagttggaaatactttgtattat--actgc 645 |||||| |||||||||||||| |||| ||||||||||||||||||||||||| || Sbjct: 25849266 agtgca-ccttgttttatgttccatatatggagttggaaatactttgtattatacacaaa 25849208 Query: 646 tgtttggtgatcggttgctcgaaggaaccctcaagagcataatggcacgcgcagtgtg-- 703 ||||| |||||| ||||| ||||||||||| ||||||||| ||||| |||| |||| Sbjct: 25849207 tgttt-gtgatcaattgctggaaggaaccctgaagagcataggggcactcgcaatgtgca 25849149 Query: 704 cctttacgatcacgc---caaaacaaagtgcgggtgtggatactgagaaattgtagtttg 760 | |||| |||| || |||||||| ||| |||||| ||||||||| | ||||||||| Sbjct: 25849148 caattacaatcaagctaaaaaaacaaactgcaggtgtgaatactgagatactgtagtttg 25849089 Query: 761 ttacccttgattcttttgtatgtaacat--gagctctgtttagactttactgtgtgatga 818 |||||| |||||||||||||||||| || |||||||| || || |||| |||||||| | Sbjct: 25849088 ttacccctgattcttttgtatgtaatatgagagctctg-ttggattttattgtgtgatca 25849030 Query: 819 aatcctgtcctgatgtctctctctgccttctcaatgaataa 859 |||| | ||| |||| | || ||||||||||||||||||| Sbjct: 25849029 aatcatctccagatggcactagctgccttctcaatgaataa 25848989 Score = 127 bits (64), Expect = 8e-26 Identities = 97/108 (89%) Strand = Plus / Minus Query: 266 cagtgagcagcatagctcatgtgaactgtggccagtgccagacagtgttaatgtttccat 325 ||||||| || |||||||| |||||||||||||||||||||||||||| |||| ||||| Sbjct: 25849868 cagtgagtagtatagctcacttgaactgtggccagtgccagacagtgttgatgtatccat 25849809 Query: 326 atggagcaccttctgttaaatgtgctatatgcaattttattacgaata 373 | |||||||||||||| || |||||||| |||||||||||||| |||| Sbjct: 25849808 acggagcaccttctgtcaagtgtgctatctgcaattttattacaaata 25849761 Score = 111 bits (56), Expect = 5e-21 Identities = 86/96 (89%) Strand = Plus / Minus Query: 39 aggcatgcagagccagatcgtgtgtcatgggtgcaggagcgttctactctaccccagagg 98 |||||||||||||||||||||||| ||||||||||||| | |||| |||||||| ||||| Sbjct: 25851854 aggcatgcagagccagatcgtgtgccatgggtgcaggaacattctgctctacccgagagg 25851795 Query: 99 ggcccctagcgtgtgctgcgcggtatgccacgccgt 134 ||| || ||||| ||||||||||| ||||| ||||| Sbjct: 25851794 ggcaccgagcgtttgctgcgcggtgtgccatgccgt 25851759 Score = 97.6 bits (49), Expect = 7e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 152 caggaatggagatggcgcagcttatatgcggtggctgtcgatctttattgatgtatactc 211 |||||||||| || || || |||||||| ||||| || ||| |||||||||||||||||| Sbjct: 25850764 caggaatggatatagctcatcttatatgtggtggatgccgaactttattgatgtatactc 25850705 Query: 212 gcaatgcaacgactgttaggtgctcatgttgtgatacagtcaatcttgtcaggccag 268 ||||||| || ||||||| || || || || |||||||||||||||||||| |||| Sbjct: 25850704 gcaatgcgacatctgttagatgttcgtgctgcgatacagtcaatcttgtcagaccag 25850648 Score = 83.8 bits (42), Expect = 1e-12 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 ccaaccgctcgatcacagaatgtaactgttgttgtcgaaaatccgatgacagtagatgaa 516 |||||| ||| |||||||||||| ||||||||||| |||||||| ||||| ||||||| | Sbjct: 25849506 ccaaccactcaatcacagaatgttactgttgttgttgaaaatcctatgacggtagatgca 25849447 Query: 517 aagggaaaattggt 530 |||||||| ||||| Sbjct: 25849446 aagggaaagttggt 25849433