BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst009k19 (827 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001054230.1| Oryza sativa (japonica cultivar-group) Os02g... 523 e-145 emb|CT835320.1| Oryza sativa (indica cultivar-group) cDNA clone:... 519 e-144 dbj|AK242556.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 519 e-144 dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 m... 496 e-137 emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein 351 3e-93 >ref|NM_001054230.1| Oryza sativa (japonica cultivar-group) Os02g0670400 (Os02g0670400) mRNA, complete cds Length = 635 Score = 523 bits (264), Expect = e-145 Identities = 453/514 (88%), Gaps = 4/514 (0%) Strand = Plus / Plus Query: 86 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggccgccggtg 145 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 121 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 180 Query: 146 gtgccggcaagcggaagaaggccgcggccagcggcaagcccaagcgcccgccctccgcct 205 | ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || || | Sbjct: 181 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 240 Query: 206 tcttcgtcttcatgtctgaattcaggcaggagtaccaggcgcagcaccctaacaataaga 265 ||||||||||||||||||| |||||||||||||||||||| ||| ||| |||| |||| Sbjct: 241 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctgacaacaaga 300 Query: 266 gtgtggccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaaa 325 |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||| | Sbjct: 301 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 360 Query: 326 aggcaccttatgtggaccaggctgggcagaagaagcaggactatgagaacagcaaagcca 385 ||||||||||||||||| ||||||| || |||||||||||||| ||||| | ||| |||| Sbjct: 361 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 420 Query: 386 ccttcaataagaatgagagcacaagttcaaagaaggctaagactgaggacgagggggaag 445 |||| ||||||| ||||||||||| |||||||| |||||||| | || || || |||| Sbjct: 421 acttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaag 480 Query: 446 gctctgacaagtccaagtctgaggttgatgacgaagaccaggatggtggcagtgatgagg 505 ||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct: 481 gctctgacaagtccaagtctgaggt---cgacgatgaccaggatggtggtagcgatgagg 537 Query: 506 aaaacgaggaagatgacgagtaaatagtgtatccagcggcacgatgtagcaaatttggtt 565 |||| ||||| ||||| ||||||||||||||||| | |||| || |||||||| | || Sbjct: 538 aaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgtgtc 597 Query: 566 ttaggtccccgattagc-ttactagtttgctatc 598 |||||||||| |||||| |||||||||||||||| Sbjct: 598 ttaggtcccctattagctttactagtttgctatc 631 >emb|CT835320.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA057N02, full insert sequence Length = 794 Score = 519 bits (262), Expect = e-144 Identities = 472/540 (87%), Gaps = 4/540 (0%) Strand = Plus / Plus Query: 86 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggccgccggtg 145 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 75 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 134 Query: 146 gtgccggcaagcggaagaaggccgcggccagcggcaagcccaagcgcccgccctccgcct 205 | ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || || | Sbjct: 135 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 194 Query: 206 tcttcgtcttcatgtctgaattcaggcaggagtaccaggcgcagcaccctaacaataaga 265 ||||||||||||||||||| |||||||||||||||||||| ||| ||| ||| |||| Sbjct: 195 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaaga 254 Query: 266 gtgtggccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaaa 325 |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||| | Sbjct: 255 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 314 Query: 326 aggcaccttatgtggaccaggctgggcagaagaagcaggactatgagaacagcaaagcca 385 ||||||||||||||||| ||||||| || |||||||||||||| ||||| | ||| |||| Sbjct: 315 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 374 Query: 386 ccttcaataagaatgagagcacaagttcaaagaaggctaagactgaggacgagggggaag 445 |||| ||||||| ||||||||||| |||||||| |||||||| | || || || |||| Sbjct: 375 acttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaag 434 Query: 446 gctctgacaagtccaagtctgaggttgatgacgaagaccaggatggtggcagtgatgagg 505 ||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct: 435 gctctgacaagtccaagtctgaggt---cgacgatgaccaggatggtggtagcgatgagg 491 Query: 506 aaaacgaggaagatgacgagtaaatagtgtatccagcggcacgatgtagcaaatttggtt 565 |||| ||||| ||||| ||||||||||||||||| | |||| || |||||||| | || Sbjct: 492 aaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgtgtc 551 Query: 566 ttaggtccccgattagc-ttactagtttgctatcgtcaatgttaagatgttgggagtagg 624 |||||||||| |||||| |||||||||||||||| || | ||||||||||||| |||| Sbjct: 552 ttaggtcccctattagctttactagtttgctatcttcgaccctaagatgttgggaatagg 611 Score = 95.6 bits (48), Expect = 3e-16 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 675 agtgtattagcaaagaaaaagcc-gaatgctgctagctgttctgttgcttttcttttgct 733 |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct: 669 agtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgct 728 Query: 734 aaccacttgtgtcagaactt 753 |||||||||| |||||||| Sbjct: 729 aaccacttgtcacagaactt 748 >dbj|AK242556.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090001B08, full insert sequence Length = 851 Score = 519 bits (262), Expect = e-144 Identities = 472/540 (87%), Gaps = 4/540 (0%) Strand = Plus / Plus Query: 86 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggccgccggtg 145 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 136 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 195 Query: 146 gtgccggcaagcggaagaaggccgcggccagcggcaagcccaagcgcccgccctccgcct 205 | ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || || | Sbjct: 196 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 255 Query: 206 tcttcgtcttcatgtctgaattcaggcaggagtaccaggcgcagcaccctaacaataaga 265 ||||||||||| ||||||| |||||||||||||||||||| ||| ||| |||| |||| Sbjct: 256 tcttcgtcttcgtgtctgagttcaggcaggagtaccaggcagcgcatcctgacaacaaga 315 Query: 266 gtgtggccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaaa 325 |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||| | Sbjct: 316 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 375 Query: 326 aggcaccttatgtggaccaggctgggcagaagaagcaggactatgagaacagcaaagcca 385 ||||||||||||||||| ||||||| || |||||||||||||| ||||| | ||| |||| Sbjct: 376 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 435 Query: 386 ccttcaataagaatgagagcacaagttcaaagaaggctaagactgaggacgagggggaag 445 |||| ||||||| ||||||||||| |||||||| |||||||| | || || || |||| Sbjct: 436 acttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaag 495 Query: 446 gctctgacaagtccaagtctgaggttgatgacgaagaccaggatggtggcagtgatgagg 505 ||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct: 496 gctctgacaagtccaagtctgaggt---cgacgatgaccaggatggtggtagcgatgagg 552 Query: 506 aaaacgaggaagatgacgagtaaatagtgtatccagcggcacgatgtagcaaatttggtt 565 |||| ||||| ||||| ||||||||||||||||| | |||| || |||||||| | || Sbjct: 553 aaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgtgtc 612 Query: 566 ttaggtccccgattagc-ttactagtttgctatcgtcaatgttaagatgttgggagtagg 624 |||||||||| |||||| |||||||||||||||| || | ||||||||||||| |||| Sbjct: 613 ttaggtcccctattagctttactagtttgctatcttcgaccctaagatgttgggaatagg 672 Score = 95.6 bits (48), Expect = 3e-16 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 675 agtgtattagcaaagaaaaagcc-gaatgctgctagctgttctgttgcttttcttttgct 733 |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct: 731 agtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgct 790 Query: 734 aaccacttgtgtcagaactt 753 |||||||||| |||||||| Sbjct: 791 aaccacttgtcacagaactt 810 >dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high mobility group box protein 2, complete cds Length = 634 Score = 496 bits (250), Expect = e-137 Identities = 450/514 (87%), Gaps = 5/514 (0%) Strand = Plus / Plus Query: 86 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggccgccggtg 145 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 121 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 180 Query: 146 gtgccggcaagcggaagaaggccgcggccagcggcaagcccaagcgcccgccctccgcct 205 | ||||| ||||||||||||||||| || ||||||||||| ||||||||||| || || | Sbjct: 181 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 240 Query: 206 tcttcgtcttcatgtctgaattcaggcaggagtaccaggcgcagcaccctaacaataaga 265 ||||||||||||||||||| |||||||||||||||||||| ||| ||| ||| |||| Sbjct: 241 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaaga 300 Query: 266 gtgtggccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaaa 325 |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||| | Sbjct: 301 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 360 Query: 326 aggcaccttatgtggaccaggctgggcagaagaagcaggactatgagaacagcaaagcca 385 ||||||||||||||||| ||||||| || |||||||||||||| ||||| | ||| |||| Sbjct: 361 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 420 Query: 386 ccttcaataagaatgagagcacaagttcaaagaaggctaagactgaggacgagggggaag 445 |||| ||||||| ||||||||||| |||||||| |||||||| | || || || |||| Sbjct: 421 acttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaag 480 Query: 446 gctctgacaagtccaagtctgaggttgatgacgaagaccaggatggtggcagtgatgagg 505 ||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct: 481 gctctgacaagtccaagtctgaggt---cgacgatgaccaggatggtggtagcgatgagg 537 Query: 506 aaaacgaggaagatgacgagtaaatagtgtatccagcggcacgatgtagcaaatttggtt 565 |||| ||||| ||||| ||||||||||||||||| | |||| || |||||||| | || Sbjct: 538 aaaatgaggacgatgaagagtaaatagtgtatcc-ggggcatgaggtagcaaactgtgtc 596 Query: 566 ttaggtccccgattagc-ttactagtttgctatc 598 ||||||||| |||| | |||||||||||||||| Sbjct: 597 ttaggtcccatattasctttactagtttgctatc 630 >emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein Length = 784 Score = 351 bits (177), Expect = 3e-93 Identities = 312/357 (87%) Strand = Plus / Plus Query: 83 ccaccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggccgccg 142 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || Sbjct: 84 ccaccatgaagggcaaggctgacacctccaagaaggacgagggcaggctccgggcgggcg 143 Query: 143 gtggtgccggcaagcggaagaaggccgcggccagcggcaagcccaagcgcccgccctccg 202 | | ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 144 gcgccgccggaaagcgcaagaaggccgccgcgagcggcaagcccaagcgcccgccctccg 203 Query: 203 ccttcttcgtcttcatgtctgaattcaggcaggagtaccaggcgcagcaccctaacaata 262 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| | Sbjct: 204 ccttcttcgtcttcatgtctgaattcaggcaggagtatcaggcgctgcaccctggcaaca 263 Query: 263 agagtgtggccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaag 322 |||| || || ||||||||||||| |||||||| |||||||| ||||||| || ||| Sbjct: 264 agagcgttgcgaccgtgagcaaggcagcaggggaaaagtggcgtgctatgtcagatcaag 323 Query: 323 aaaaggcaccttatgtggaccaggctgggcagaagaagcaggactatgagaacagcaaag 382 | ||| ||| ||||||||||| ||||| ||||||||||||||||||||||| | || | Sbjct: 324 agaagcaaccatatgtggaccaagctggacagaagaagcaggactatgagaagactaagg 383 Query: 383 ccaccttcaataagaatgagagcacaagttcaaagaaggctaagactgaggacgagg 439 | | ||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 384 caaactttgataagaaggagagcacaagctcaaagaaggctaagactgaggatgagg 440 Score = 143 bits (72), Expect = 1e-30 Identities = 78/80 (97%) Strand = Plus / Plus Query: 674 tagtgtattagcaaagaaaaagccgaatgctgctagctgttctgttgcttttcttttgct 733 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 tagtgcattagcaaagaaaaagccgaatgctgctagctgttctgttgcttttcttttgct 705 Query: 734 aaccacttgtgtcagaactt 753 |||||||||||||| ||||| Sbjct: 706 aaccacttgtgtcacaactt 725