BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst009j17 (1000 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AK072794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114 ref|NM_001049667.1| Oryza sativa (japonica cultivar-group) Os01g... 412 e-111 emb|CT832092.1| Oryza sativa (indica cultivar-group) cDNA clone:... 406 e-110 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-19 dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic D... 105 3e-19 >dbj|AK072794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138M03, full insert sequence Length = 1102 Score = 420 bits (212), Expect = e-114 Identities = 399/461 (86%), Gaps = 9/461 (1%) Strand = Plus / Plus Query: 284 agaggaacatggatcatcaccacccgcagcagcagcagtacggcgacccttacagggcac 343 ||||||| |||||||| |||||| ||||||||||||||| | |||||||| || || Sbjct: 385 agaggaagatggatcagcaccacgtgcagcagcagcagtatgttgacccttatcggacaa 444 Query: 344 tggtgccgtccccgcagcccgaccatctccacgccctccaataccaccacca------ga 397 |||||| ||| || ||||| ||||| ||| | |||||||| ||| | ||||| | Sbjct: 445 tggtgctgtcaccacagcctgaccacctcaatgccctccagtacaatcaccagcagcagc 504 Query: 398 cacagccac---cgcaagcaacgccgccacagccgcaacatcaccacgcctcgctcgcct 454 ||||||||| |||||||||| || ||||| || ||||||||||| ||||| ||||||| Sbjct: 505 cacagccaccaccgcaagcaactccaccacaaccacaacatcaccatgcctcactcgcct 564 Query: 455 cccacttccacctcctccatttggtgacaagattagctgatgcaattggaacaggcacaa 514 |||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| Sbjct: 565 cccacttccatctcctccatttgacgacaagattagctgatgctattggaaagggcacaa 624 Query: 515 gggatcaaagttttgatgcactggttgaagaattgaccagtcaatttgccaggtgccaac 574 ||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 625 gggatcaaaattctgatgcactggttgaagatttgaccagtcaatttgctaggtgtcaac 684 Query: 575 aattattgaactccatatcaggaacactaagctcaaaatctattacggttgaaggacaaa 634 || |||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||| Sbjct: 685 aactattaaactccatatcgggaacactaagctcgaaatctataacagttgaaggacaaa 744 Query: 635 ggcaaagtttggaagaaacacggcagctgcttgatcaaaggaaggatttgatcacaaagt 694 || |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct: 745 ggaaaagtttggaagaaacgcagcagctccttgatcagaggaaggatttgatcacaaagt 804 Query: 695 acagaagctccgttgaagacctccttaagggggacacaaga 735 |||||||||||||||||||||| || |||||||| |||||| Sbjct: 805 acagaagctccgttgaagacctgctcaagggggatacaaga 845 >ref|NM_001049667.1| Oryza sativa (japonica cultivar-group) Os01g0501000 (Os01g0501000) mRNA, complete cds Length = 1100 Score = 412 bits (208), Expect = e-111 Identities = 398/461 (86%), Gaps = 9/461 (1%) Strand = Plus / Plus Query: 284 agaggaacatggatcatcaccacccgcagcagcagcagtacggcgacccttacagggcac 343 ||||||| |||||||| |||||| ||||||||||||||| | |||||||| || || Sbjct: 384 agaggaagatggatcagcaccacgtgcagcagcagcagtatgttgacccttatcggacaa 443 Query: 344 tggtgccgtccccgcagcccgaccatctccacgccctccaataccaccacca------ga 397 |||||| ||| || ||||| ||||| ||| | |||||||| ||| | ||||| | Sbjct: 444 tggtgctgtcaccacagcctgaccacctcaatgccctccagtacaatcaccagcagcagc 503 Query: 398 cacagccac---cgcaagcaacgccgccacagccgcaacatcaccacgcctcgctcgcct 454 ||||||||| |||||||||| || |||| || ||||||||||| ||||| ||||||| Sbjct: 504 cacagccaccaccgcaagcaactccaccaccaccacaacatcaccatgcctcactcgcct 563 Query: 455 cccacttccacctcctccatttggtgacaagattagctgatgcaattggaacaggcacaa 514 |||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| Sbjct: 564 cccacttccatctcctccatttgacgacaagattagctgatgctattggaaagggcacaa 623 Query: 515 gggatcaaagttttgatgcactggttgaagaattgaccagtcaatttgccaggtgccaac 574 ||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 624 gggatcaaaattctgatgcactggttgaagatttgaccagtcaatttgctaggtgtcaac 683 Query: 575 aattattgaactccatatcaggaacactaagctcaaaatctattacggttgaaggacaaa 634 || |||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||| Sbjct: 684 aactattaaactccatatcgggaacactaagctcgaaatctataacagttgaaggacaaa 743 Query: 635 ggcaaagtttggaagaaacacggcagctgcttgatcaaaggaaggatttgatcacaaagt 694 || |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct: 744 ggaaaagtttggaagaaacgcagcagctccttgatcagaggaaggatttgatcacaaagt 803 Query: 695 acagaagctccgttgaagacctccttaagggggacacaaga 735 |||||||||||||||||||||| || |||||||| |||||| Sbjct: 804 acagaagctccgttgaagacctgctcaagggggatacaaga 844 >emb|CT832092.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124L12, full insert sequence Length = 1186 Score = 406 bits (205), Expect = e-110 Identities = 392/454 (86%), Gaps = 9/454 (1%) Strand = Plus / Plus Query: 284 agaggaacatggatcatcaccacccgcagcagcagcagtacggcgacccttacagggcac 343 ||||||| |||||||| |||||| ||||||||||||||| | |||||||| || || Sbjct: 383 agaggaagatggatcagcaccacgtgcagcagcagcagtatgttgacccttatcggacaa 442 Query: 344 tggtgccgtccccgcagcccgaccatctccacgccctccaataccaccacca------ga 397 |||||| ||| || ||||| ||||| ||| | |||||||| ||| | ||||| | Sbjct: 443 tggtgctgtcaccacagcctgaccacctcaatgccctccagtacaatcaccagcagcagc 502 Query: 398 cacagccac---cgcaagcaacgccgccacagccgcaacatcaccacgcctcgctcgcct 454 ||||||||| |||||||||| || |||| || ||||||||||| ||||| ||||||| Sbjct: 503 cacagccaccaccgcaagcaactccaccaccaccacaacatcaccatgcctcactcgcct 562 Query: 455 cccacttccacctcctccatttggtgacaagattagctgatgcaattggaacaggcacaa 514 |||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| Sbjct: 563 cccacttccatctcctccatttgacgacaagattagctgatgctattggaaagggcacaa 622 Query: 515 gggatcaaagttttgatgcactggttgaagaattgaccagtcaatttgccaggtgccaac 574 ||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 623 gggatcaaaattctgatgcactggttgaagatttgaccagtcaatttgctaggtgtcaac 682 Query: 575 aattattgaactccatatcaggaacactaagctcaaaatctattacggttgaaggacaaa 634 || |||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||| Sbjct: 683 aactattaaactccatatcgggaacactaagctcgaaatctataacagttgaaggacaaa 742 Query: 635 ggcaaagtttggaagaaacacggcagctgcttgatcaaaggaaggatttgatcacaaagt 694 || |||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct: 743 ggaaaagtttggaagaaacgcagcagctccttgatcagaggaaggatttgatcacaaagt 802 Query: 695 acagaagctccgttgaagacctccttaaggggga 728 |||||||||||||||||||||| || |||||||| Sbjct: 803 acagaagctccgttgaagacctgctcaaggggga 836 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 105 bits (53), Expect = 3e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 537 ggttgaagaattgaccagtcaatttgccaggtgccaacaattattgaactccatatcagg 596 ||||||||| ||||||||||||||||| ||||| |||||| |||| ||||||||||| || Sbjct: 17316011 ggttgaagatttgaccagtcaatttgctaggtgtcaacaactattaaactccatatcggg 17315952 Query: 597 aacactaagctcaaaatctat 617 |||||||||||| |||||||| Sbjct: 17315951 aacactaagctcgaaatctat 17315931 Score = 91.7 bits (46), Expect = 5e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 678 ggatttgatcacaaagtacagaagctccgttgaagacctccttaagggggacacaaga 735 ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct: 17305806 ggatttgatcacaaagtacagaagctccgttgaagacctgctcaagggggatacaaga 17305749 Score = 85.7 bits (43), Expect = 3e-13 Identities = 161/200 (80%), Gaps = 9/200 (4%) Strand = Plus / Minus Query: 284 agaggaacatggatcatcaccacccgcagcagcagcagtacggcgacccttacagggcac 343 ||||||| |||||||| |||||| ||||||||||||||| | |||||||| || || Sbjct: 17319887 agaggaagatggatcagcaccacgtgcagcagcagcagtatgttgacccttatcggacaa 17319828 Query: 344 tggtgccgtccccgcagcccgaccatctccacgccctccaataccaccacca------ga 397 |||||| ||| || ||||| ||||| ||| | |||||||| ||| | ||||| | Sbjct: 17319827 tggtgctgtcaccacagcctgaccacctcaatgccctccagtacaatcaccagcagcagc 17319768 Query: 398 cacagccacc---gcaagcaacgccgccacagccgcaacatcaccacgcctcgctcgcct 454 |||||||||| ||||||||| || |||| || ||||||||||| ||||| ||||||| Sbjct: 17319767 cacagccaccaccgcaagcaactccaccaccaccacaacatcaccatgcctcactcgcct 17319708 Query: 455 cccacttccacctcctccat 474 |||||||||| ||||||||| Sbjct: 17319707 cccacttccatctcctccat 17319688 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 480 gacaagattagctgatgcaattggaacaggcacaagggatcaaagttttgatgcactggt 539 |||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| Sbjct: 17316866 gacaagattagctgatgctattggaaagggcacaagggatcaaaattctgatgcactggt 17316807 >dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 105 bits (53), Expect = 3e-19 Identities = 74/81 (91%) Strand = Plus / Minus Query: 537 ggttgaagaattgaccagtcaatttgccaggtgccaacaattattgaactccatatcagg 596 ||||||||| ||||||||||||||||| ||||| |||||| |||| ||||||||||| || Sbjct: 82272 ggttgaagatttgaccagtcaatttgctaggtgtcaacaactattaaactccatatcggg 82213 Query: 597 aacactaagctcaaaatctat 617 |||||||||||| |||||||| Sbjct: 82212 aacactaagctcgaaatctat 82192 Score = 91.7 bits (46), Expect = 5e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 678 ggatttgatcacaaagtacagaagctccgttgaagacctccttaagggggacacaaga 735 ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct: 72067 ggatttgatcacaaagtacagaagctccgttgaagacctgctcaagggggatacaaga 72010 Score = 85.7 bits (43), Expect = 3e-13 Identities = 161/200 (80%), Gaps = 9/200 (4%) Strand = Plus / Minus Query: 284 agaggaacatggatcatcaccacccgcagcagcagcagtacggcgacccttacagggcac 343 ||||||| |||||||| |||||| ||||||||||||||| | |||||||| || || Sbjct: 86148 agaggaagatggatcagcaccacgtgcagcagcagcagtatgttgacccttatcggacaa 86089 Query: 344 tggtgccgtccccgcagcccgaccatctccacgccctccaataccaccacca------ga 397 |||||| ||| || ||||| ||||| ||| | |||||||| ||| | ||||| | Sbjct: 86088 tggtgctgtcaccacagcctgaccacctcaatgccctccagtacaatcaccagcagcagc 86029 Query: 398 cacagccacc---gcaagcaacgccgccacagccgcaacatcaccacgcctcgctcgcct 454 |||||||||| ||||||||| || |||| || ||||||||||| ||||| ||||||| Sbjct: 86028 cacagccaccaccgcaagcaactccaccaccaccacaacatcaccatgcctcactcgcct 85969 Query: 455 cccacttccacctcctccat 474 |||||||||| ||||||||| Sbjct: 85968 cccacttccatctcctccat 85949 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 480 gacaagattagctgatgcaattggaacaggcacaagggatcaaagttttgatgcactggt 539 |||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| Sbjct: 83127 gacaagattagctgatgctattggaaagggcacaagggatcaaaattctgatgcactggt 83068