BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst009a02 (559 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|DQ244666.1| Zea mays clone 9960 mRNA sequence 367 3e-98 emb|X59983.1|BNRPS15A B.napus mRNA for ribosomal protein S15a (p... 327 3e-86 ref|NM_202054.2| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN ... 280 6e-72 ref|NM_100651.3| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN ... 280 6e-72 gb|AF332447.1| Arabidopsis thaliana putative ribosomal protein S... 280 6e-72 >gb|DQ244666.1| Zea mays clone 9960 mRNA sequence Length = 696 Score = 367 bits (185), Expect = 3e-98 Identities = 350/405 (86%) Strand = Plus / Plus Query: 75 gaggtaaggtaaggatggtgagggtcagtgtgttgaatgatgctcttaaaagcatgtaca 134 ||||| ||| ||||||||||||||| || || |||| |||||||| || |||||||||| Sbjct: 88 gaggttaggcaaggatggtgagggttagcgtcctgaacgatgctctcaagagcatgtaca 147 Query: 135 atgctgagaagcgtgggaagaggcaggtcatgatcaggccatcttccaaggtgatcatca 194 | |||||||||||||| ||||||||||| ||||||||||| || || || |||||||||| Sbjct: 148 acgctgagaagcgtggcaagaggcaggtgatgatcaggccctcctcaaaagtgatcatca 207 Query: 195 agttccttctagtcatgcagaagcacggatacattggtgagtttgagtatgtcgatgatc 254 ||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct: 208 agttcctcatcgtcatgcagaagcacggttacattggtgagtttgagtatgttgatgacc 267 Query: 255 acaggtccggcaaaattgtggtcgagttgaatggcaggctgaacaagtgtggcgtcatca 314 |||| || ||||| ||||| || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 268 acagatctggcaagattgttgtggagttgaacggcagactgaacaagtgtggagtcatca 327 Query: 315 gtcctcgctttgatgttggtgtaaaggagattgaaggatggactgccaggttgcttccgt 374 | || ||||||||||||||||| |||||||| || |||||||| |||||| | ||||| | Sbjct: 328 gcccccgctttgatgttggtgtcaaggagatcgagggatggaccgccaggctccttccat 387 Query: 375 ctcggcagtttggttacattgtgctgacaacttccgctggtattatggaccatgaggagg 434 |||| |||||||| ||||| || |||||||| || ||||| || ||||| || ||||| | Sbjct: 388 ctcgtcagtttggctacatcgtcctgacaacctctgctggcatcatggatcacgaggaag 447 Query: 435 caaggcgcaagaacgttggtggaaaagtgctaggatttttctact 479 | ||| | |||||||||||||| ||||||||||| |||||||||| Sbjct: 448 ccaggaggaagaacgttggtggcaaagtgctaggctttttctact 492 >emb|X59983.1|BNRPS15A B.napus mRNA for ribosomal protein S15a (pPCB8) Length = 757 Score = 327 bits (165), Expect = 3e-86 Identities = 297/341 (87%) Strand = Plus / Plus Query: 89 atggtgagggtcagtgtgttgaatgatgctcttaaaagcatgtacaatgctgagaagcgt 148 |||||||| |||||||| | || |||||||| || ||||||| |||||| ||||||||| Sbjct: 229 atggtgagaatcagtgtgctcaacgatgctctcaagagcatgttcaatgccgagaagcgt 288 Query: 149 gggaagaggcaggtcatgatcaggccatcttccaaggtgatcatcaagttccttctagtc 208 || ||||||||||||||||||||||| |||||||| || |||||||||||||| | ||| Sbjct: 289 ggcaagaggcaggtcatgatcaggccttcttccaaagtcatcatcaagttcctcatcgtc 348 Query: 209 atgcagaagcacggatacattggtgagtttgagtatgtcgatgatcacaggtccggcaaa 268 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| | ||||||||| Sbjct: 349 atgcagaagcacggttacataggtgagtttgagtatgttgatgaccaccgatccggcaaa 408 Query: 269 attgtggtcgagttgaatggcaggctgaacaagtgtggcgtcatcagtcctcgctttgat 328 || || ||||| ||||| || ||| |||||||||||||||| ||||| || || |||||| Sbjct: 409 atcgttgtcgaattgaacgggaggttgaacaagtgtggcgttatcagcccacgttttgat 468 Query: 329 gttggtgtaaaggagattgaaggatggactgccaggttgcttccgtctcggcagtttggt 388 |||||||| |||||||||||||| ||||||||| | ||||||| || | |||||||| Sbjct: 469 gttggtgtcaaggagattgaaggttggactgcccgtctgcttccttccagacagtttggg 528 Query: 389 tacattgtgctgacaacttccgctggtattatggaccatga 429 |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 529 tacattgtgctgactacttccgctggcattatggaccatga 569 >ref|NM_202054.2| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome (RPS15A) mRNA, complete cds Length = 723 Score = 280 bits (141), Expect = 6e-72 Identities = 273/317 (86%) Strand = Plus / Plus Query: 113 gatgctcttaaaagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 172 |||||||| || |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 147 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 206 Query: 173 ccatcttccaaggtgatcatcaagttccttctagtcatgcagaagcacggatacattggt 232 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 207 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 266 Query: 233 gagtttgagtatgtcgatgatcacaggtccggcaaaattgtggtcgagttgaatggcagg 292 |||||||||||||||||||| ||||| || ||||| || || || || ||||| || ||| Sbjct: 267 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 326 Query: 293 ctgaacaagtgtggcgtcatcagtcctcgctttgatgttggtgtaaaggagattgaagga 352 ||||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| Sbjct: 327 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 386 Query: 353 tggactgccaggttgcttccgtctcggcagtttggttacattgtgctgacaacttccgct 412 ||||||||| | ||||| || ||| | |||||||||||||| |||||||| || || ||| Sbjct: 387 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 446 Query: 413 ggtattatggaccatga 429 || |||||||||||||| Sbjct: 447 ggcattatggaccatga 463 >ref|NM_100651.3| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome (RPS15A) mRNA, complete cds Length = 723 Score = 280 bits (141), Expect = 6e-72 Identities = 273/317 (86%) Strand = Plus / Plus Query: 113 gatgctcttaaaagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 172 |||||||| || |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 147 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 206 Query: 173 ccatcttccaaggtgatcatcaagttccttctagtcatgcagaagcacggatacattggt 232 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 207 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 266 Query: 233 gagtttgagtatgtcgatgatcacaggtccggcaaaattgtggtcgagttgaatggcagg 292 |||||||||||||||||||| ||||| || ||||| || || || || ||||| || ||| Sbjct: 267 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 326 Query: 293 ctgaacaagtgtggcgtcatcagtcctcgctttgatgttggtgtaaaggagattgaagga 352 ||||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| Sbjct: 327 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 386 Query: 353 tggactgccaggttgcttccgtctcggcagtttggttacattgtgctgacaacttccgct 412 ||||||||| | ||||| || ||| | |||||||||||||| |||||||| || || ||| Sbjct: 387 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 446 Query: 413 ggtattatggaccatga 429 || |||||||||||||| Sbjct: 447 ggcattatggaccatga 463 >gb|AF332447.1| Arabidopsis thaliana putative ribosomal protein S15 (At1g07770) mRNA, complete cds Length = 393 Score = 280 bits (141), Expect = 6e-72 Identities = 273/317 (86%) Strand = Plus / Plus Query: 113 gatgctcttaaaagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 172 |||||||| || |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 25 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 84 Query: 173 ccatcttccaaggtgatcatcaagttccttctagtcatgcagaagcacggatacattggt 232 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 85 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 144 Query: 233 gagtttgagtatgtcgatgatcacaggtccggcaaaattgtggtcgagttgaatggcagg 292 |||||||||||||||||||| ||||| || ||||| || || || || ||||| || ||| Sbjct: 145 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 204 Query: 293 ctgaacaagtgtggcgtcatcagtcctcgctttgatgttggtgtaaaggagattgaagga 352 ||||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| Sbjct: 205 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 264 Query: 353 tggactgccaggttgcttccgtctcggcagtttggttacattgtgctgacaacttccgct 412 ||||||||| | ||||| || ||| | |||||||||||||| |||||||| || || ||| Sbjct: 265 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 324 Query: 413 ggtattatggaccatga 429 || |||||||||||||| Sbjct: 325 ggcattatggaccatga 341