BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst008m05
         (510 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NM_001055614.1| Oryza sativa (japonica cultivar-group) Os03g...   307   2e-80
gb|DQ244940.1| Zea mays clone 11860 mRNA sequence                     287   2e-74
emb|X82124.1|ZMRPS28 Z.mays mRNA for ribosomal protein S28            287   2e-74
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...   272   1e-69
gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome...   272   1e-69

>ref|NM_001055614.1| Oryza sativa (japonica cultivar-group) Os03g0167100 (Os03g0167100)
           mRNA, complete cds
          Length = 321

 Score =  307 bits (155), Expect = 2e-80
 Identities = 236/263 (89%)
 Strand = Plus / Plus

                                                                       
Query: 21  cgccgccgccgccgccgccctcgcttcgcgcgctcgtcggccttcgtccacacgaggaag 80
           ||||||||||||||||||| |||  | |||| ||||||||||  || |||| ||||||| 
Sbjct: 59  cgccgccgccgccgccgccatcgtcttgcgccctcgtcggccgccgcccacgcgaggaaa 118

                                                                       
Query: 81  agagcatggacacccaggtgaagttggctgttgtggtgaaggtgatgggccggactggct 140
            |||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||
Sbjct: 119 cgagcatggacacccaggtgaagctggctgttgtggtgaaggtgatggggcgtaccggct 178

                                                                       
Query: 141 ccaggggtcaggtgacccaggtcagagtcaagttcttggatgaccagaaccgtctcatca 200
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccaggggtcaggtgacccaggtgagagtcaagttcttggatgaccagaaccgtctcatca 238

                                                                       
Query: 201 tgaggaacgtcaagggcccggtccgtgagggtgacatcctgaccctgcttgagtctgaga 260
           |||||||||||||||||||||| || ||||| |||||||| ||| |||| ||||| ||||
Sbjct: 239 tgaggaacgtcaagggcccggttcgagagggcgacatcctcaccttgctcgagtccgaga 298

                                  
Query: 261 gagaggcgaggagactgcgctga 283
           | ||||| ||||| || ||||||
Sbjct: 299 gggaggccaggaggcttcgctga 321


>gb|DQ244940.1| Zea mays clone 11860 mRNA sequence
          Length = 596

 Score =  287 bits (145), Expect = 2e-74
 Identities = 212/233 (90%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 52  gctcgtcggccttcgtccacacgaggaa-gagagcatggacacccaggtgaagttggctg 110
           |||||||||||| ||||| | |||| |  |||||||||||||||||||||||| | ||||
Sbjct: 51  gctcgtcggcctccgtccccgcgagaagcgagagcatggacacccaggtgaagcttgctg 110

                                                                       
Query: 111 ttgtggtgaaggtgatgggccggactggctccaggggtcaggtgacccaggtcagagtca 170
           ||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||| |
Sbjct: 111 ttgtggtgaaggttatgggcaggaccgggtccaggggtcaggtgacccaggtcagagtga 170

                                                                       
Query: 171 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggcccggtccgtgagg 230
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 171 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggccctgttcgtgagg 230

                                                                
Query: 231 gtgacatcctgaccctgcttgagtctgagagagaggcgaggagactgcgctga 283
           |||||||||| |||||||| ||||||||| | ||||| ||||| |||||||||
Sbjct: 231 gtgacatcctcaccctgctcgagtctgagcgggaggccaggaggctgcgctga 283


>emb|X82124.1|ZMRPS28 Z.mays mRNA for ribosomal protein S28
          Length = 406

 Score =  287 bits (145), Expect = 2e-74
 Identities = 212/233 (90%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 52  gctcgtcggccttcgtccacacgaggaa-gagagcatggacacccaggtgaagttggctg 110
           |||||||||||| ||||| | |||| |  |||||||||||||||||||||||| | ||||
Sbjct: 41  gctcgtcggcctccgtccccgcgagaagcgagagcatggacacccaggtgaagcttgctg 100

                                                                       
Query: 111 ttgtggtgaaggtgatgggccggactggctccaggggtcaggtgacccaggtcagagtca 170
           |||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct: 101 ttgtggtgaaagtgatgggcaggaccggctccaggggtcaggtgacccaggtcagagtga 160

                                                                       
Query: 171 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggcccggtccgtgagg 230
           |||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||
Sbjct: 161 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggtcctgtttgtgagg 220

                                                                
Query: 231 gtgacatcctgaccctgcttgagtctgagagagaggcgaggagactgcgctga 283
           |||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 221 gtgacatcctcaccctgctcgagtctgagagggaggccaggaggctgcgctga 273


>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  272 bits (137), Expect = 1e-69
 Identities = 185/201 (92%)
 Strand = Plus / Plus

                                                                           
Query: 83      agcatggacacccaggtgaagttggctgttgtggtgaaggtgatgggccggactggctcc 142
               ||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||
Sbjct: 3612626 agcatggacacccaggtgaagctggctgttgtggtgaaggtgatggggcgtaccggctcc 3612685

                                                                           
Query: 143     aggggtcaggtgacccaggtcagagtcaagttcttggatgaccagaaccgtctcatcatg 202
               |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3612686 aggggtcaggtgacccaggtgagagtcaagttcttggatgaccagaaccgtctcatcatg 3612745

                                                                           
Query: 203     aggaacgtcaagggcccggtccgtgagggtgacatcctgaccctgcttgagtctgagaga 262
               |||||||||||||||||||| || ||||| |||||||| ||| |||| ||||| ||||| 
Sbjct: 3612746 aggaacgtcaagggcccggttcgagagggcgacatcctcaccttgctcgagtccgagagg 3612805

                                    
Query: 263     gaggcgaggagactgcgctga 283
               ||||| ||||| || ||||||
Sbjct: 3612806 gaggccaggaggcttcgctga 3612826


>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19,
              complete sequence
          Length = 150620

 Score =  272 bits (137), Expect = 1e-69
 Identities = 185/201 (92%)
 Strand = Plus / Plus

                                                                          
Query: 83     agcatggacacccaggtgaagttggctgttgtggtgaaggtgatgggccggactggctcc 142
              ||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||
Sbjct: 130168 agcatggacacccaggtgaagctggctgttgtggtgaaggtgatggggcgtaccggctcc 130227

                                                                          
Query: 143    aggggtcaggtgacccaggtcagagtcaagttcttggatgaccagaaccgtctcatcatg 202
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 130228 aggggtcaggtgacccaggtgagagtcaagttcttggatgaccagaaccgtctcatcatg 130287

                                                                          
Query: 203    aggaacgtcaagggcccggtccgtgagggtgacatcctgaccctgcttgagtctgagaga 262
              |||||||||||||||||||| || ||||| |||||||| ||| |||| ||||| ||||| 
Sbjct: 130288 aggaacgtcaagggcccggttcgagagggcgacatcctcaccttgctcgagtccgagagg 130347

                                   
Query: 263    gaggcgaggagactgcgctga 283
              ||||| ||||| || ||||||
Sbjct: 130348 gaggccaggaggcttcgctga 130368