BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst008j03 (836 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001059340.1| Oryza sativa (japonica cultivar-group) Os04g... 773 0.0 dbj|AK099153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 773 0.0 dbj|AK061355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 773 0.0 gb|AY336991.1| Oryza sativa (japonica cultivar-group) COP9 mRNA,... 484 e-133 emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 274 5e-70 >ref|NM_001059340.1| Oryza sativa (japonica cultivar-group) Os04g0428900 (Os04g0428900) mRNA, complete cds Length = 961 Score = 773 bits (390), Expect = 0.0 Identities = 546/598 (91%) Strand = Plus / Plus Query: 117 cctcctccgatggatctcaacgccgtccacgctgccctctccgccaagtcctactccggc 176 |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | Sbjct: 71 cctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcctcc 130 Query: 177 ctcgcccccctctgcgacgacctcctcctccagaccgcgtcccggggcgccgccacggac 236 ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct: 131 gtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccaccgac 190 Query: 237 gactggccctacgccgtccacctcctcgcccacctcttcctaaacgacctgaacagcgcg 296 | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 191 ggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagcgcg 250 Query: 297 aggtttctgtggaagtcggtgccgcaggaggtgaaggacgcgcggtcggagctcgccgcc 356 |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 251 aggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgccgcc 310 Query: 357 gtctggaggatcggccagtgcctctggaaccgcgactacgccggcgtctacacggccgtg 416 |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||| | Sbjct: 311 gtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggccgcg 370 Query: 417 caggggttcgagtggggccctgaaatcgctgacttcgtggccgccttcctagaaagctac 476 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 371 caggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagctac 430 Query: 477 agaaagaggatattccagctgttgacttctgcgtattccacaatcagcgttgcagatgtg 536 ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 431 agaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgatgtg 490 Query: 537 gctcacttcacggggatgagtgaggacgatgctactaactatgctgtgcaaaatgggtgg 596 |||||||||| |||||||| |||||| ||||||||||||||||| ||||||| || ||| Sbjct: 491 gctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggttgg 550 Query: 597 attttggatgcggcaaccaagatgcttaccgtcagaaaaccaaaggctcagaccaaccag 656 | |||||||||||| ||| ||||||||| ||| ||||||||||| | |||| |||||| Sbjct: 551 agcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaaccag 610 Query: 657 aagctcgacgcaagcaaactgcagcgtttaactgaatgcgttttccacctggagcact 714 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 611 aagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcact 668 >dbj|AK099153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069F08, full insert sequence Length = 947 Score = 773 bits (390), Expect = 0.0 Identities = 546/598 (91%) Strand = Plus / Plus Query: 117 cctcctccgatggatctcaacgccgtccacgctgccctctccgccaagtcctactccggc 176 |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | Sbjct: 59 cctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcctcc 118 Query: 177 ctcgcccccctctgcgacgacctcctcctccagaccgcgtcccggggcgccgccacggac 236 ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct: 119 gtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccaccgac 178 Query: 237 gactggccctacgccgtccacctcctcgcccacctcttcctaaacgacctgaacagcgcg 296 | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 179 ggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagcgcg 238 Query: 297 aggtttctgtggaagtcggtgccgcaggaggtgaaggacgcgcggtcggagctcgccgcc 356 |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 239 aggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgccgcc 298 Query: 357 gtctggaggatcggccagtgcctctggaaccgcgactacgccggcgtctacacggccgtg 416 |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||| | Sbjct: 299 gtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggccgcg 358 Query: 417 caggggttcgagtggggccctgaaatcgctgacttcgtggccgccttcctagaaagctac 476 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 359 caggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagctac 418 Query: 477 agaaagaggatattccagctgttgacttctgcgtattccacaatcagcgttgcagatgtg 536 ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 419 agaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgatgtg 478 Query: 537 gctcacttcacggggatgagtgaggacgatgctactaactatgctgtgcaaaatgggtgg 596 |||||||||| |||||||| |||||| ||||||||||||||||| ||||||| || ||| Sbjct: 479 gctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggttgg 538 Query: 597 attttggatgcggcaaccaagatgcttaccgtcagaaaaccaaaggctcagaccaaccag 656 | |||||||||||| ||| ||||||||| ||| ||||||||||| | |||| |||||| Sbjct: 539 agcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaaccag 598 Query: 657 aagctcgacgcaagcaaactgcagcgtttaactgaatgcgttttccacctggagcact 714 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 599 aagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcact 656 >dbj|AK061355.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H11, full insert sequence Length = 961 Score = 773 bits (390), Expect = 0.0 Identities = 546/598 (91%) Strand = Plus / Plus Query: 117 cctcctccgatggatctcaacgccgtccacgctgccctctccgccaagtcctactccggc 176 |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | Sbjct: 71 cctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcctcc 130 Query: 177 ctcgcccccctctgcgacgacctcctcctccagaccgcgtcccggggcgccgccacggac 236 ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct: 131 gtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccaccgac 190 Query: 237 gactggccctacgccgtccacctcctcgcccacctcttcctaaacgacctgaacagcgcg 296 | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 191 ggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagcgcg 250 Query: 297 aggtttctgtggaagtcggtgccgcaggaggtgaaggacgcgcggtcggagctcgccgcc 356 |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 251 aggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgccgcc 310 Query: 357 gtctggaggatcggccagtgcctctggaaccgcgactacgccggcgtctacacggccgtg 416 |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||| | Sbjct: 311 gtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggccgcg 370 Query: 417 caggggttcgagtggggccctgaaatcgctgacttcgtggccgccttcctagaaagctac 476 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 371 caggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctagaaagctac 430 Query: 477 agaaagaggatattccagctgttgacttctgcgtattccacaatcagcgttgcagatgtg 536 ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 431 agaaagaggattttccagttgttgacttctgcatattccacaatcagcgttgctgatgtg 490 Query: 537 gctcacttcacggggatgagtgaggacgatgctactaactatgctgtgcaaaatgggtgg 596 |||||||||| |||||||| |||||| ||||||||||||||||| ||||||| || ||| Sbjct: 491 gctcacttcatggggatgaatgaggaggatgctactaactatgccatgcaaaacggttgg 550 Query: 597 attttggatgcggcaaccaagatgcttaccgtcagaaaaccaaaggctcagaccaaccag 656 | |||||||||||| ||| ||||||||| ||| ||||||||||| | |||| |||||| Sbjct: 551 agcttggatgcggcagccaggatgcttactgtcgtaaaaccaaaggttaagactaaccag 610 Query: 657 aagctcgacgcaagcaaactgcagcgtttaactgaatgcgttttccacctggagcact 714 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 611 aagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttccacctggagcact 668 >gb|AY336991.1| Oryza sativa (japonica cultivar-group) COP9 mRNA, complete cds Length = 616 Score = 484 bits (244), Expect = e-133 Identities = 325/352 (92%) Strand = Plus / Plus Query: 117 cctcctccgatggatctcaacgccgtccacgctgccctctccgccaagtcctactccggc 176 |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | Sbjct: 58 cctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcctcc 117 Query: 177 ctcgcccccctctgcgacgacctcctcctccagaccgcgtcccggggcgccgccacggac 236 ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct: 118 gtcgccccgctctgcgacgacctcttcctccaggccgcgtcccggggcgccgccaccgac 177 Query: 237 gactggccctacgccgtccacctcctcgcccacctcttcctaaacgacctgaacagcgcg 296 | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 178 ggctggccctacgccgtgcacctcctcgcccacctctacctcaacgacctgaacagcgcg 237 Query: 297 aggtttctgtggaagtcggtgccgcaggaggtgaaggacgcgcggtcggagctcgccgcc 356 |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 238 aggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccggagctcgccgcc 297 Query: 357 gtctggaggatcggccagtgcctctggaaccgcgactacgccggcgtctacacggccgtg 416 |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||| | Sbjct: 298 gtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtctacgcggccgcg 357 Query: 417 caggggttcgagtggggccctgaaatcgctgacttcgtggccgccttcctag 468 ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 358 caggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcctag 409 >emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 274 bits (138), Expect = 5e-70 Identities = 171/182 (93%) Strand = Plus / Minus Query: 287 gaacagcgcgaggtttctgtggaagtcggtgccgcaggaggtgaaggacgcgcggtcgga 346 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| Sbjct: 52122 gaacagcgcgaggtttctgtggaagtcgacgccgcaggaggcgaaggacgcgcggccgga 52063 Query: 347 gctcgccgccgtctggaggatcggccagtgcctctggaaccgcgactacgccggcgtcta 406 |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 52062 gctcgccgccgtctggaggatcgggcagtgcctctggaaccgcgattacgcgggcgtcta 52003 Query: 407 cacggccgtgcaggggttcgagtggggccctgaaatcgctgacttcgtggccgccttcct 466 | |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 52002 cgcggccgcgcaggggttcgagtggagccctgaaatcgccgacttcgtggccgccttcct 51943 Query: 467 ag 468 || Sbjct: 51942 ag 51941 Score = 163 bits (82), Expect = 1e-36 Identities = 103/110 (93%) Strand = Plus / Minus Query: 467 agaaagctacagaaagaggatattccagctgttgacttctgcgtattccacaatcagcgt 526 ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct: 51036 agaaagctacagaaagaggattttccagttgttgacttctgcatattccacaatcagcgt 50977 Query: 527 tgcagatgtggctcacttcacggggatgagtgaggacgatgctactaact 576 ||| |||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct: 50976 tgctgatgtggctcacttcatggggatgaatgaggaggatgctactaact 50927 Score = 135 bits (68), Expect = 3e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 583 tgcaaaatgggtggattttggatgcggcaaccaagatgcttaccgtcagaaaaccaaagg 642 ||||||| || |||| |||||||||||| ||| ||||||||| ||| ||||||||||| Sbjct: 49660 tgcaaaacggttggagcttggatgcggcagccaggatgcttactgtcgtaaaaccaaagg 49601 Query: 643 ctcagaccaaccagaagctcgacgcaagcaaactgcagcgtttaactgaatgcgttttcc 702 | |||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||| Sbjct: 49600 ttaagactaaccagaagctcgatgcaagcaaacttcagcgattaactgaatgcgtcttcc 49541 Query: 703 acctggagcact 714 |||||||||||| Sbjct: 49540 acctggagcact 49529 Score = 113 bits (57), Expect = 1e-21 Identities = 72/77 (93%) Strand = Plus / Minus Query: 211 ccgcgtcccggggcgccgccacggacgactggccctacgccgtccacctcctcgcccacc 270 |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| Sbjct: 52309 ccgcgtcccggggcgccgccaccgacggctggccctacgccgtgcacctcctcgcccacc 52250 Query: 271 tcttcctaaacgacctg 287 ||| ||| ||||||||| Sbjct: 52249 tctacctcaacgacctg 52233 Score = 105 bits (53), Expect = 3e-19 Identities = 83/93 (89%) Strand = Plus / Minus Query: 117 cctcctccgatggatctcaacgccgtccacgctgccctctccgccaagtcctactccggc 176 |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| | Sbjct: 52494 cctcctccgatggatctcgccgccgtccacgccgccctcgccggcaagtcctactcctcc 52435 Query: 177 ctcgcccccctctgcgacgacctcctcctccag 209 ||||||| ||||||||||||||| |||||||| Sbjct: 52434 gtcgccccgctctgcgacgacctcttcctccag 52402