BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst007j23 (841 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001049025.1| Oryza sativa (japonica cultivar-group) Os01g... 513 e-142 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 412 e-112 dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 412 e-112 >ref|NM_001049025.1| Oryza sativa (japonica cultivar-group) Os01g0229800 (Os01g0229800) mRNA, complete cds Length = 912 Score = 513 bits (259), Expect = e-142 Identities = 409/459 (89%) Strand = Plus / Plus Query: 175 agctgaacagcatctggtaccagccggaggagatcttcccggccgccggcacgccggagg 234 |||| ||||||||||||| |||||| |||||||||||||| | | |||||| ||||||| Sbjct: 410 agctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagc 469 Query: 235 agcgccagcacgccttctgggtccgcgtcaacaagcgctacttcgccctcgccgggaagc 294 ||||||| |||||||||||||||| ||||| | ||||||||| ||||||| | ||||| Sbjct: 470 agcgccaacacgccttctgggtccccgtcagctcccgctacttctccctcgctgagaagc 529 Query: 295 tggaggggatggagctaccggcgtgcgtgaacgcgacgacgtgcctgcctcgggcgccga 354 | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 530 tagaggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccga 589 Query: 355 gggtgactcgggtgagcagggggtgcagcgccaacgtgttcctcgacaacgccgactacc 414 ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 590 gggtgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctacc 649 Query: 415 gccagttcctgagctccaagttcgggtgcaccccggtggagatggagagcgccgccgtcg 474 | ||||||||| | |||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 650 gtcagttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtgg 709 Query: 475 cgctcgtttcgcaccagctcggcgtccccttcctcaccatccgctcgctctccgacctcg 534 ||||||| ||||||||| || |||||| ||||||||||||||||| ||||||||||||| Sbjct: 710 cgctcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcg 769 Query: 535 ccggcggaggctcggcgctcggcaacgaggccagcacgttcctcagcatcgccgcgcaga 594 | ||||| ||||| ||||||||||||||||| || ||||||| ||||||||| |||| Sbjct: 770 ctggcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccaga 829 Query: 595 acgccgtggatgtcatgctcaaattcgtgccgctcctcg 633 ||||||| || ||||||||||| ||||| |||||||||| Sbjct: 830 acgccgtcgacgtcatgctcaacttcgtcccgctcctcg 868 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Plus Query: 43 ggcagcggtacggcgacgggcaagagaacgagctgtcgctggaggccgccggcgactaca 102 ||||||| ||||||||||| | |||||||||||| |||| ||||||||||||||||||| Sbjct: 290 ggcagcgctacggcgacggcccggagaacgagctgccgctcgaggccgccggcgactaca 349 Query: 103 cgcgggagtacggcttcctcaacttctccgac 134 | || || |||||||||||||||||||||| Sbjct: 350 cccgcgacctcggcttcctcaacttctccgac 381 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 412 bits (208), Expect = e-112 Identities = 304/336 (90%) Strand = Plus / Minus Query: 298 aggggatggagctaccggcgtgcgtgaacgcgacgacgtgcctgcctcgggcgccgaggg 357 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 7184862 aggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccgaggg 7184803 Query: 358 tgactcgggtgagcagggggtgcagcgccaacgtgttcctcgacaacgccgactaccgcc 417 |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 7184802 tgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctaccgtc 7184743 Query: 418 agttcctgagctccaagttcgggtgcaccccggtggagatggagagcgccgccgtcgcgc 477 |||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 7184742 agttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtggcgc 7184683 Query: 478 tcgtttcgcaccagctcggcgtccccttcctcaccatccgctcgctctccgacctcgccg 537 |||| ||||||||| || |||||| ||||||||||||||||| |||||||||||||| | Sbjct: 7184682 tcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcgctg 7184623 Query: 538 gcggaggctcggcgctcggcaacgaggccagcacgttcctcagcatcgccgcgcagaacg 597 |||| ||||| ||||||||||||||||| || ||||||| ||||||||| ||||||| Sbjct: 7184622 gcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccagaacg 7184563 Query: 598 ccgtggatgtcatgctcaaattcgtgccgctcctcg 633 |||| || ||||||||||| ||||| |||||||||| Sbjct: 7184562 ccgtcgacgtcatgctcaacttcgtcccgctcctcg 7184527 Score = 107 bits (54), Expect = 7e-20 Identities = 108/126 (85%) Strand = Plus / Minus Query: 175 agctgaacagcatctggtaccagccggaggagatcttcccggccgccggcacgccggagg 234 |||| ||||||||||||| |||||| |||||||||||||| | | |||||| ||||||| Sbjct: 7185543 agctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagc 7185484 Query: 235 agcgccagcacgccttctgggtccgcgtcaacaagcgctacttcgccctcgccgggaagc 294 ||||||| |||||||||||||||| ||||| | ||||||||| ||||||| | ||||| Sbjct: 7185483 agcgccaacacgccttctgggtccccgtcagctcccgctacttctccctcgctgagaagc 7185424 Query: 295 tggagg 300 | |||| Sbjct: 7185423 tagagg 7185418 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 43 ggcagcggtacggcgacgggcaagagaacgagctgtcgctggaggccgccggcgactaca 102 ||||||| ||||||||||| | |||||||||||| |||| ||||||||||||||||||| Sbjct: 7185663 ggcagcgctacggcgacggcccggagaacgagctgccgctcgaggccgccggcgactaca 7185604 Query: 103 cgcgggagtacggcttcctcaacttctccgac 134 | || || |||||||||||||||||||||| Sbjct: 7185603 cccgcgacctcggcttcctcaacttctccgac 7185572 >dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 412 bits (208), Expect = e-112 Identities = 304/336 (90%) Strand = Plus / Minus Query: 298 aggggatggagctaccggcgtgcgtgaacgcgacgacgtgcctgcctcgggcgccgaggg 357 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 79510 aggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccgaggg 79451 Query: 358 tgactcgggtgagcagggggtgcagcgccaacgtgttcctcgacaacgccgactaccgcc 417 |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 79450 tgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctaccgtc 79391 Query: 418 agttcctgagctccaagttcgggtgcaccccggtggagatggagagcgccgccgtcgcgc 477 |||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 79390 agttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtggcgc 79331 Query: 478 tcgtttcgcaccagctcggcgtccccttcctcaccatccgctcgctctccgacctcgccg 537 |||| ||||||||| || |||||| ||||||||||||||||| |||||||||||||| | Sbjct: 79330 tcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcgctg 79271 Query: 538 gcggaggctcggcgctcggcaacgaggccagcacgttcctcagcatcgccgcgcagaacg 597 |||| ||||| ||||||||||||||||| || ||||||| ||||||||| ||||||| Sbjct: 79270 gcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccagaacg 79211 Query: 598 ccgtggatgtcatgctcaaattcgtgccgctcctcg 633 |||| || ||||||||||| ||||| |||||||||| Sbjct: 79210 ccgtcgacgtcatgctcaacttcgtcccgctcctcg 79175 Score = 107 bits (54), Expect = 7e-20 Identities = 108/126 (85%) Strand = Plus / Minus Query: 175 agctgaacagcatctggtaccagccggaggagatcttcccggccgccggcacgccggagg 234 |||| ||||||||||||| |||||| |||||||||||||| | | |||||| ||||||| Sbjct: 80191 agctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagc 80132 Query: 235 agcgccagcacgccttctgggtccgcgtcaacaagcgctacttcgccctcgccgggaagc 294 ||||||| |||||||||||||||| ||||| | ||||||||| ||||||| | ||||| Sbjct: 80131 agcgccaacacgccttctgggtccccgtcagctcccgctacttctccctcgctgagaagc 80072 Query: 295 tggagg 300 | |||| Sbjct: 80071 tagagg 80066 Score = 95.6 bits (48), Expect = 3e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 43 ggcagcggtacggcgacgggcaagagaacgagctgtcgctggaggccgccggcgactaca 102 ||||||| ||||||||||| | |||||||||||| |||| ||||||||||||||||||| Sbjct: 80311 ggcagcgctacggcgacggcccggagaacgagctgccgctcgaggccgccggcgactaca 80252 Query: 103 cgcgggagtacggcttcctcaacttctccgac 134 | || || |||||||||||||||||||||| Sbjct: 80251 cccgcgacctcggcttcctcaacttctccgac 80220