BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst005o19 (1232 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001055323.1| Oryza sativa (japonica cultivar-group) Os03g... 712 0.0 dbj|AK070517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 712 0.0 gb|DQ245512.1| Zea mays clone 16559 mRNA sequence 468 e-128 gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome... 424 e-115 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 424 e-115 >ref|NM_001055323.1| Oryza sativa (japonica cultivar-group) Os03g0120400 (Os03g0120400) mRNA, complete cds Length = 1130 Score = 712 bits (359), Expect = 0.0 Identities = 537/595 (90%), Gaps = 6/595 (1%) Strand = Plus / Plus Query: 347 gccggccatgtcgaacacggtctcctctgccctgtcgtccttcctgtactgctgcttcta 406 |||||||||||||| | |||||||| || |||||||| ||||| ||||||||||||| Sbjct: 202 gccggccatgtcgacc---gtctcctccgcgctgtcgtcgttcctctactgctgcttctc 258 Query: 407 ccctaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 466 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 ccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 318 Query: 467 gacgagcaccaacaccttctactacccggaaggggggctcaccagccgcaggatgggccg 526 ||||||||||||||||| ||||||| || || || ||| || | |||||||||||| | Sbjct: 319 gacgagcaccaacacctactactac---gagggtggcctcgccggacgcaggatgggcag 375 Query: 527 gagcaggccgctgtctttgcagacagtggagctcaaagtccggatgtgctgctcaggctg 586 ||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||| Sbjct: 376 gagcaggccactgtcactgcagacagtggagctcaaggttcggatgtgctgctcaggctg 435 Query: 587 cgagagggtggtgaagcacgcgctgatgaagctgagaggagtcgactccgtggaggtgga 646 ||||||||| |||||||| || || |||||||| ||||| || || || ||||||||||| Sbjct: 436 cgagagggtcgtgaagcatgctctcatgaagctcagaggggttgattcggtggaggtgga 495 Query: 647 cgtggagatggagaaggtgacggtgacggggtacgtggagcggcacaaggtgctcaagga 706 |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| Sbjct: 496 gttggagatggagaaggtgacggtgacggggtacgtggagaggcagcgggtgctgaagga 555 Query: 707 ggtgcggcgcgcggggaagaaggcggagttctggcccaacccggacctgccgctccactt 766 |||| |||| |||||||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct: 556 ggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctgccgctctactt 615 Query: 767 cacgtcggccaaggactacttccgcgacgaggagtccttccgcgagagctacaactacta 826 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 616 cacgtcggccaaggactacttccacgacgaggagtccttccgccccagctacaactacta 675 Query: 827 ccgccacggctacaacggcgacaagcacggccacctaccggagccccaccgcggcgccga 886 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 676 ccgccacggctacaacggcgacaagcacggccacctcccggagccccaccgcggcgccga 735 Query: 887 ccccgtcagcaacatgttcaacgacgacaacgtaaacgcatgcgccatcatgtaa 941 ||||||||||||| | |||||||||||| |||| ||||| ||| ||||||||||| Sbjct: 736 ccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatcatgtaa 790 >dbj|AK070517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A13, full insert sequence Length = 1131 Score = 712 bits (359), Expect = 0.0 Identities = 537/595 (90%), Gaps = 6/595 (1%) Strand = Plus / Plus Query: 347 gccggccatgtcgaacacggtctcctctgccctgtcgtccttcctgtactgctgcttcta 406 |||||||||||||| | |||||||| || |||||||| ||||| ||||||||||||| Sbjct: 203 gccggccatgtcgacc---gtctcctccgcgctgtcgtcgttcctctactgctgcttctc 259 Query: 407 ccctaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 466 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 ccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 319 Query: 467 gacgagcaccaacaccttctactacccggaaggggggctcaccagccgcaggatgggccg 526 ||||||||||||||||| ||||||| || || || ||| || | |||||||||||| | Sbjct: 320 gacgagcaccaacacctactactac---gagggtggcctcgccggacgcaggatgggcag 376 Query: 527 gagcaggccgctgtctttgcagacagtggagctcaaagtccggatgtgctgctcaggctg 586 ||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||| Sbjct: 377 gagcaggccactgtcactgcagacagtggagctcaaggttcggatgtgctgctcaggctg 436 Query: 587 cgagagggtggtgaagcacgcgctgatgaagctgagaggagtcgactccgtggaggtgga 646 ||||||||| |||||||| || || |||||||| ||||| || || || ||||||||||| Sbjct: 437 cgagagggtcgtgaagcatgctctcatgaagctcagaggggttgattcggtggaggtgga 496 Query: 647 cgtggagatggagaaggtgacggtgacggggtacgtggagcggcacaaggtgctcaagga 706 |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| Sbjct: 497 gttggagatggagaaggtgacggtgacggggtacgtggagaggcagcgggtgctgaagga 556 Query: 707 ggtgcggcgcgcggggaagaaggcggagttctggcccaacccggacctgccgctccactt 766 |||| |||| |||||||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct: 557 ggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctgccgctctactt 616 Query: 767 cacgtcggccaaggactacttccgcgacgaggagtccttccgcgagagctacaactacta 826 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 617 cacgtcggccaaggactacttccacgacgaggagtccttccgccccagctacaactacta 676 Query: 827 ccgccacggctacaacggcgacaagcacggccacctaccggagccccaccgcggcgccga 886 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 677 ccgccacggctacaacggcgacaagcacggccacctcccggagccccaccgcggcgccga 736 Query: 887 ccccgtcagcaacatgttcaacgacgacaacgtaaacgcatgcgccatcatgtaa 941 ||||||||||||| | |||||||||||| |||| ||||| ||| ||||||||||| Sbjct: 737 ccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatcatgtaa 791 >gb|DQ245512.1| Zea mays clone 16559 mRNA sequence Length = 849 Score = 468 bits (236), Expect = e-128 Identities = 368/412 (89%) Strand = Plus / Plus Query: 528 agcaggccgctgtctttgcagacagtggagctcaaagtccggatgtgctgctcaggctgc 587 |||||||||||||| ||||||| |||||||| || || || ||||||||||| |||||| Sbjct: 176 agcaggccgctgtcgctgcagacggtggagctgaaggtgcgcatgtgctgctcgggctgc 235 Query: 588 gagagggtggtgaagcacgcgctgatgaagctgagaggagtcgactccgtggaggtggac 647 ||| | ||||||||||||||| ||| || |||| | || || |||||||||||||||||| Sbjct: 236 gagcgcgtggtgaagcacgcggtgacgaggctgcgcggggtggactccgtggaggtggac 295 Query: 648 gtggagatggagaaggtgacggtgacggggtacgtggagcggcacaaggtgctcaaggag 707 |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| Sbjct: 296 gtggagatggagaaggtgacggtgacggggtacgtggaccgccaccgggtgctcaaggag 355 Query: 708 gtgcggcgcgcggggaagaaggcggagttctggcccaacccggacctgccgctccacttc 767 || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 356 gtccggcgcgcggggaagaaggcggagttctggcccaacccggacctgccgatgcacttc 415 Query: 768 acgtcggccaaggactacttccgcgacgaggagtccttccgcgagagctacaactactac 827 || | |||||||||||||||| |||||||||||| | |||| | ||||||||||||| Sbjct: 416 acctgcgccaaggactacttccacgacgaggagtcgtaccgccgcacctacaactactac 475 Query: 828 cgccacggctacaacggcgacaagcacggccacctaccggagccccaccgcggcgccgac 887 ||||||||||||||||||||||||||||| || || | ||||||||||||||||||||| Sbjct: 476 cgccacggctacaacggcgacaagcacggacagctccacgagccccaccgcggcgccgac 535 Query: 888 cccgtcagcaacatgttcaacgacgacaacgtaaacgcatgcgccatcatgt 939 ||||||||||||||||||||||||||| |||| ||||| ||| || |||||| Sbjct: 536 cccgtcagcaacatgttcaacgacgacgacgtcaacgcctgctccgtcatgt 587 >gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 424 bits (214), Expect = e-115 Identities = 283/306 (92%) Strand = Plus / Minus Query: 636 gtggaggtggacgtggagatggagaaggtgacggtgacggggtacgtggagcggcacaag 695 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 9016 gtggaggtggagttggagatggagaaggtgacggtgacggggtacgtggagaggcagcgg 8957 Query: 696 gtgctcaaggaggtgcggcgcgcggggaagaaggcggagttctggcccaacccggacctg 755 ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| Sbjct: 8956 gtgctgaaggaggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctg 8897 Query: 756 ccgctccacttcacgtcggccaaggactacttccgcgacgaggagtccttccgcgagagc 815 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 8896 ccgctctacttcacgtcggccaaggactacttccacgacgaggagtccttccgccccagc 8837 Query: 816 tacaactactaccgccacggctacaacggcgacaagcacggccacctaccggagccccac 875 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 8836 tacaactactaccgccacggctacaacggcgacaagcacggccacctcccggagccccac 8777 Query: 876 cgcggcgccgaccccgtcagcaacatgttcaacgacgacaacgtaaacgcatgcgccatc 935 |||||||||||||||||||||||| | |||||||||||| |||| ||||| ||| ||||| Sbjct: 8776 cgcggcgccgaccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatc 8717 Query: 936 atgtaa 941 |||||| Sbjct: 8716 atgtaa 8711 Score = 204 bits (103), Expect = 6e-49 Identities = 173/195 (88%), Gaps = 6/195 (3%) Strand = Plus / Minus Query: 347 gccggccatgtcgaacacggtctcctctgccctgtcgtccttcctgtactgctgcttcta 406 |||||||||||||| | |||||||| || |||||||| ||||| ||||||||||||| Sbjct: 10244 gccggccatgtcgacc---gtctcctccgcgctgtcgtcgttcctctactgctgcttctc 10188 Query: 407 ccctaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 466 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10187 ccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 10128 Query: 467 gacgagcaccaacaccttctactacccggaaggggggctcaccagccgcaggatgggccg 526 ||||||||||||||||| ||||||| || || || ||| || | |||||||||||| | Sbjct: 10127 gacgagcaccaacacctactactac---gagggtggcctcgccggacgcaggatgggcag 10071 Query: 527 gagcaggccgctgtc 541 ||||||||| ||||| Sbjct: 10070 gagcaggccactgtc 10056 Score = 103 bits (52), Expect = 2e-18 Identities = 73/80 (91%) Strand = Plus / Minus Query: 546 cagacagtggagctcaaagtccggatgtgctgctcaggctgcgagagggtggtgaagcac 605 ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct: 9485 cagacagtggagctcaaggttcggatgtgctgctcaggctgcgagagggtcgtgaagcat 9426 Query: 606 gcgctgatgaagctgagagg 625 || || |||||||| ||||| Sbjct: 9425 gctctcatgaagctcagagg 9406 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 424 bits (214), Expect = e-115 Identities = 283/306 (92%) Strand = Plus / Minus Query: 636 gtggaggtggacgtggagatggagaaggtgacggtgacggggtacgtggagcggcacaag 695 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 1105310 gtggaggtggagttggagatggagaaggtgacggtgacggggtacgtggagaggcagcgg 1105251 Query: 696 gtgctcaaggaggtgcggcgcgcggggaagaaggcggagttctggcccaacccggacctg 755 ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| Sbjct: 1105250 gtgctgaaggaggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctg 1105191 Query: 756 ccgctccacttcacgtcggccaaggactacttccgcgacgaggagtccttccgcgagagc 815 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 1105190 ccgctctacttcacgtcggccaaggactacttccacgacgaggagtccttccgccccagc 1105131 Query: 816 tacaactactaccgccacggctacaacggcgacaagcacggccacctaccggagccccac 875 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1105130 tacaactactaccgccacggctacaacggcgacaagcacggccacctcccggagccccac 1105071 Query: 876 cgcggcgccgaccccgtcagcaacatgttcaacgacgacaacgtaaacgcatgcgccatc 935 |||||||||||||||||||||||| | |||||||||||| |||| ||||| ||| ||||| Sbjct: 1105070 cgcggcgccgaccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatc 1105011 Query: 936 atgtaa 941 |||||| Sbjct: 1105010 atgtaa 1105005 Score = 204 bits (103), Expect = 6e-49 Identities = 173/195 (88%), Gaps = 6/195 (3%) Strand = Plus / Minus Query: 347 gccggccatgtcgaacacggtctcctctgccctgtcgtccttcctgtactgctgcttcta 406 |||||||||||||| | |||||||| || |||||||| ||||| ||||||||||||| Sbjct: 1106538 gccggccatgtcgacc---gtctcctccgcgctgtcgtcgttcctctactgctgcttctc 1106482 Query: 407 ccctaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 466 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106481 ccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccaccc 1106422 Query: 467 gacgagcaccaacaccttctactacccggaaggggggctcaccagccgcaggatgggccg 526 ||||||||||||||||| ||||||| || || || ||| || | |||||||||||| | Sbjct: 1106421 gacgagcaccaacacctactactac---gagggtggcctcgccggacgcaggatgggcag 1106365 Query: 527 gagcaggccgctgtc 541 ||||||||| ||||| Sbjct: 1106364 gagcaggccactgtc 1106350 Score = 103 bits (52), Expect = 2e-18 Identities = 73/80 (91%) Strand = Plus / Minus Query: 546 cagacagtggagctcaaagtccggatgtgctgctcaggctgcgagagggtggtgaagcac 605 ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct: 1105779 cagacagtggagctcaaggttcggatgtgctgctcaggctgcgagagggtcgtgaagcat 1105720 Query: 606 gcgctgatgaagctgagagg 625 || || |||||||| ||||| Sbjct: 1105719 gctctcatgaagctcagagg 1105700