BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst003g13 (920 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CT837804.1| Oryza sativa (indica cultivar-group) cDNA clone:... 359 1e-95 ref|NM_001050341.1| Oryza sativa (japonica cultivar-group) Os01g... 347 5e-92 gb|AY107889.1| Zea mays PCO115800 mRNA sequence 343 8e-91 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 170 6e-39 dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic D... 170 6e-39 >emb|CT837804.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence Length = 1027 Score = 359 bits (181), Expect = 1e-95 Identities = 283/317 (89%) Strand = Plus / Plus Query: 353 ccgcagccctactcggcggccgcaccgtactacgcccagggctaccaggccgtgcaaggt 412 |||||| | ||| |||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 331 ccgcagacgtacccggccgccgcgccgtactacgcccagggctaccaggccgtgcaaggt 390 Query: 413 tatatacctgttgttgaaggacggcctgtgaggatgcgacgtcttccatgctgtggcctt 472 || || || |||||||||||| |||||||||| |||||||| ||||||| || |||||| Sbjct: 391 tacattcccgttgttgaaggaaggcctgtgagaatgcgacgccttccattttgcggcctt 450 Query: 473 ggcatgggttggtttctgttcgttattggcttcttccttgctgccattccatggtatatt 532 |||||||| ||||| ||||| | |||||||||||||| ||||||||||||||||||||| Sbjct: 451 ggcatgggctggttcctgtttatcattggcttcttcctcgctgccattccatggtatatt 510 Query: 533 ggagcttttgttctgatctgtgtccgagtacatgattacagggagaaaccaggatacgtt 592 |||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct: 511 ggagcttttgttttgatatgcgtccgagtacatgattacagggagaaaccaggatatgtt 570 Query: 593 gcttgtactattgctgcttcacttgctgcaattgccgtcctgcttggtgtcacaaaagga 652 ||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||| |||| Sbjct: 571 gcttgcactattgcggcttcgcttgctgccattgctatcctgcttggtgtcacaagagga 630 Query: 653 gcagaggtgtggtgaac 669 | |||| | |||||||| Sbjct: 631 gaagagatttggtgaac 647 Score = 131 bits (66), Expect = 5e-27 Identities = 180/218 (82%), Gaps = 15/218 (6%) Strand = Plus / Plus Query: 100 ccactgcgccatggccggcgagatgcctgacgccgatggcaaggcccggtcggcctcctc 159 |||| ||| ||||||||||||||||||||||||||| |||||| |||| |||||||||| Sbjct: 78 ccaccgcggcatggccggcgagatgcctgacgccgacggcaagccccgctcggcctcct- 136 Query: 160 ctccgcgtcagggttcccgccctcggcgccgctgcagccgcag---cagcaccaccagta 216 | ||||||| ||| |||||||||| |||||||||| ||||| ||||||| Sbjct: 137 --------ctgggttccagccgtcggcgccgccgcagccgcaggcgcagcagtaccagta 188 Query: 217 cggcaccttcgggcccccgtcc---gcctccggcgagttcccgcagccggcggtcgggtt 273 |||||| |||||| |||||||| ||| |||| ||| |||||||||||||||||||||| Sbjct: 189 cggcacgttcggggccccgtcctccgcccccggtgaggtcccgcagccggcggtcgggtt 248 Query: 274 cccccaaacggctccaccacccgggctccgacactacc 311 |||||| |||| || || || |||||||| ||||||| Sbjct: 249 cccccagccggccccgccgccggggctccggcactacc 286 >ref|NM_001050341.1| Oryza sativa (japonica cultivar-group) Os01g0667100 (Os01g0667100) mRNA, complete cds Length = 558 Score = 347 bits (175), Expect = 5e-92 Identities = 280/315 (88%) Strand = Plus / Plus Query: 353 ccgcagccctactcggcggccgcaccgtactacgcccagggctaccaggccgtgcaaggt 412 |||||| | ||| |||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 244 ccgcagacgtacccggccgccgcgccgtactacgccctgggctaccaggccgtgcaaggt 303 Query: 413 tatatacctgttgttgaaggacggcctgtgaggatgcgacgtcttccatgctgtggcctt 472 || || || |||||||||||| |||||||||| |||||||| ||||||| || |||||| Sbjct: 304 tacattcccgttgttgaaggaaggcctgtgagaatgcgacgccttccattttgcggcctt 363 Query: 473 ggcatgggttggtttctgttcgttattggcttcttccttgctgccattccatggtatatt 532 |||||||| ||||| ||||| | |||||||||||||| ||||||||||||||||||||| Sbjct: 364 ggcatgggctggttcctgtttatcattggcttcttcctcgctgccattccatggtatatt 423 Query: 533 ggagcttttgttctgatctgtgtccgagtacatgattacagggagaaaccaggatacgtt 592 |||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct: 424 ggagcttttgttttgatatgcgtccgagtacatgattacagggagaaaccaggatatgtt 483 Query: 593 gcttgtactattgctgcttcacttgctgcaattgccgtcctgcttggtgtcacaaaagga 652 ||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||| |||| Sbjct: 484 gcttgcactattgcggcttcgcttgctgccattgctatcctgcttggtgtcacaagagga 543 Query: 653 gcagaggtgtggtga 667 | |||| | |||||| Sbjct: 544 gaagagatttggtga 558 Score = 135 bits (68), Expect = 3e-28 Identities = 173/208 (83%), Gaps = 15/208 (7%) Strand = Plus / Plus Query: 110 atggccggcgagatgcctgacgccgatggcaaggcccggtcggcctcctcctccgcgtca 169 |||||||||||||||||||||||||| |||||| |||| |||||||||||| Sbjct: 1 atggccggcgagatgcctgacgccgacggcaagccccgctcggcctcctcc--------- 51 Query: 170 gggttcccgccctcggcgccgctgcagccgcag---cagcaccaccagtacggcaccttc 226 ||||||| ||| |||||||||| |||||||||| ||||| ||||||||||||| ||| Sbjct: 52 gggttccagccgtcggcgccgccgcagccgcaggcgcagcagtaccagtacggcacgttc 111 Query: 227 gggcccccgtcc---gcctccggcgagttcccgcagccggcggtcgggttcccccaaacg 283 ||| |||||||| ||| |||| ||| |||||||||||||||||||||||||||| || Sbjct: 112 ggggccccgtcctccgcccccggtgaggtcccgcagccggcggtcgggttcccccagccg 171 Query: 284 gctccaccacccgggctccgacactacc 311 || || || || |||||||| ||||||| Sbjct: 172 gccccgccgccggggctccggcactacc 199 >gb|AY107889.1| Zea mays PCO115800 mRNA sequence Length = 894 Score = 343 bits (173), Expect = 8e-91 Identities = 275/309 (88%) Strand = Plus / Plus Query: 359 ccctactcggcggccgcaccgtactacgcccagggctaccaggccgtgcaaggttatata 418 ||||||||||| ||||| |||||||||||||| ||||||||| || ||||||||||| Sbjct: 378 ccctactcggccgccgcgccgtactacgcccaaggctaccagatcgctcaaggttatatt 437 Query: 419 cctgttgttgaaggacggcctgtgaggatgcgacgtcttccatgctgtggccttggcatg 478 ||||||||||||||| ||||||| || || || | ||||||||| ||||||||||||||| Sbjct: 438 cctgttgttgaaggaaggcctgttagaatccgtcctcttccatgttgtggccttggcatg 497 Query: 479 ggttggtttctgttcgttattggcttcttccttgctgccattccatggtatattggagct 538 || ||||||||||| | ||||| |||||| |||||||||||||||||||| |||||||| Sbjct: 498 gggtggtttctgtttataattgggttcttctttgctgccattccatggtatcttggagct 557 Query: 539 tttgttctgatctgtgtccgagtacatgattacagggagaaaccaggatacgttgcttgt 598 ||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 558 tttgtgctgatttgtgtccgagtacgtgattacagggagaaaccaggatatgttgcttgc 617 Query: 599 actattgctgcttcacttgctgcaattgccgtcctgcttggtgtcacaaaaggagcagag 658 ||||||||||| || |||||||||||||| || |||||||| | |||||||||||| ||| Sbjct: 618 actattgctgcctcgcttgctgcaattgctgtgctgcttggcgccacaaaaggagcggag 677 Query: 659 gtgtggtga 667 ||||||||| Sbjct: 678 gtgtggtga 686 Score = 79.8 bits (40), Expect = 2e-11 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 209 caccagtacggcaccttcgggcccccgtccg---cctccggcgagttcccgcagccggcg 265 ||||||||||||||||| || ||||| |||| ||||||| ||||| |||||||||||| Sbjct: 225 caccagtacggcacctttggtcccccatccggagcctccggggagtttccgcagccggcg 284 Query: 266 gtcgggttccccca 279 |||||||||||||| Sbjct: 285 gtcgggttccccca 298 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 170 bits (86), Expect = 6e-39 Identities = 104/110 (94%) Strand = Plus / Minus Query: 497 attggcttcttccttgctgccattccatggtatattggagcttttgttctgatctgtgtc 556 |||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||| Sbjct: 27265641 attggcttcttcctcgctgccattccatggtatattggagcttttgttttgatatgcgtc 27265582 Query: 557 cgagtacatgattacagggagaaaccaggatacgttgcttgtactattgc 606 |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 27265581 cgagtacatgattacagggagaaaccaggatatgttgcttgcactattgc 27265532 Score = 139 bits (70), Expect = 2e-29 Identities = 181/218 (83%), Gaps = 15/218 (6%) Strand = Plus / Minus Query: 100 ccactgcgccatggccggcgagatgcctgacgccgatggcaaggcccggtcggcctcctc 159 |||| ||| ||||||||||||||||||||||||||| |||||| |||| ||||||||||| Sbjct: 27267126 ccaccgcggcatggccggcgagatgcctgacgccgacggcaagccccgctcggcctcctc 27267067 Query: 160 ctccgcgtcagggttcccgccctcggcgccgctgcagccgcag---cagcaccaccagta 216 | ||||||| ||| |||||||||| |||||||||| ||||| ||||||| Sbjct: 27267066 c---------gggttccagccgtcggcgccgccgcagccgcaggcgcagcagtaccagta 27267016 Query: 217 cggcaccttcgggcccccgtcc---gcctccggcgagttcccgcagccggcggtcgggtt 273 |||||| |||||| |||||||| ||| |||| ||| |||||||||||||||||||||| Sbjct: 27267015 cggcacgttcggggccccgtcctccgcccccggtgaggtcccgcagccggcggtcgggtt 27266956 Query: 274 cccccaaacggctccaccacccgggctccgacactacc 311 |||||| |||| || || || |||||||| ||||||| Sbjct: 27266955 cccccagccggccccgccgccggggctccggcactacc 27266918 Score = 77.8 bits (39), Expect = 7e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 409 aggttatatacctgttgttgaaggacggcctgtgaggatgcgacgtcttccatgctgtgg 468 |||||| || || |||||||||||| |||||||||| |||||||| ||||||| || || Sbjct: 27265813 aggttacattcccgttgttgaaggaaggcctgtgagaatgcgacgccttccattttgcgg 27265754 Query: 469 ccttggcatgggttggtttctgt 491 |||||||||||| ||||| |||| Sbjct: 27265753 ccttggcatgggctggttcctgt 27265731 >dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 170 bits (86), Expect = 6e-39 Identities = 104/110 (94%) Strand = Plus / Minus Query: 497 attggcttcttccttgctgccattccatggtatattggagcttttgttctgatctgtgtc 556 |||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||| Sbjct: 46158 attggcttcttcctcgctgccattccatggtatattggagcttttgttttgatatgcgtc 46099 Query: 557 cgagtacatgattacagggagaaaccaggatacgttgcttgtactattgc 606 |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 46098 cgagtacatgattacagggagaaaccaggatatgttgcttgcactattgc 46049 Score = 139 bits (70), Expect = 2e-29 Identities = 181/218 (83%), Gaps = 15/218 (6%) Strand = Plus / Minus Query: 100 ccactgcgccatggccggcgagatgcctgacgccgatggcaaggcccggtcggcctcctc 159 |||| ||| ||||||||||||||||||||||||||| |||||| |||| ||||||||||| Sbjct: 47643 ccaccgcggcatggccggcgagatgcctgacgccgacggcaagccccgctcggcctcctc 47584 Query: 160 ctccgcgtcagggttcccgccctcggcgccgctgcagccgcag---cagcaccaccagta 216 | ||||||| ||| |||||||||| |||||||||| ||||| ||||||| Sbjct: 47583 c---------gggttccagccgtcggcgccgccgcagccgcaggcgcagcagtaccagta 47533 Query: 217 cggcaccttcgggcccccgtcc---gcctccggcgagttcccgcagccggcggtcgggtt 273 |||||| |||||| |||||||| ||| |||| ||| |||||||||||||||||||||| Sbjct: 47532 cggcacgttcggggccccgtcctccgcccccggtgaggtcccgcagccggcggtcgggtt 47473 Query: 274 cccccaaacggctccaccacccgggctccgacactacc 311 |||||| |||| || || || |||||||| ||||||| Sbjct: 47472 cccccagccggccccgccgccggggctccggcactacc 47435 Score = 77.8 bits (39), Expect = 7e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 409 aggttatatacctgttgttgaaggacggcctgtgaggatgcgacgtcttccatgctgtgg 468 |||||| || || |||||||||||| |||||||||| |||||||| ||||||| || || Sbjct: 46330 aggttacattcccgttgttgaaggaaggcctgtgagaatgcgacgccttccattttgcgg 46271 Query: 469 ccttggcatgggttggtttctgt 491 |||||||||||| ||||| |||| Sbjct: 46270 ccttggcatgggctggttcctgt 46248