BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst003b17
         (726 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom...   216   9e-53
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome...   216   9e-53
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...   216   9e-53
gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete seq...   180   5e-42
emb|X14224.1|ZMMU4 Maize Mu4 transposable element DNA                 129   2e-26

>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
              map S2606, complete sequence
          Length = 124140

 Score =  216 bits (109), Expect = 9e-53
 Identities = 145/157 (92%)
 Strand = Plus / Minus

                                                                          
Query: 417    cggacgacgacgaggatgccgaggagaagcggccgcggcggcgcacagcggacgggctcg 476
              ||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 116803 cggacgacgacgacgaagtcgaggagaagcggccgcggcggcgcacggcggacgggctgg 116744

                                                                          
Query: 477    ccgtatactccgccgaggagctcgggttcggcaaggccgacgctggcggcaccgcgctct 536
              |  ||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 116743 cgatatactccgccgacgagctcgggttcggcaagtccgacgccggcggcaccccgctct 116684

                                                   
Query: 537    gccccttcgactgcgactgctgcttctgagccttttc 573
              ||||||||||||||||||||||||||||||| |||||
Sbjct: 116683 gccccttcgactgcgactgctgcttctgagctttttc 116647



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 96/111 (86%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                          
Query: 212    gcggcggcggctgctgcggccaagaagccgaagaagcagaaggcgggcaacgagatcgac 271
              ||||||||||| |  |||||  |||||||||||||| ||||||||  |||||||||||||
Sbjct: 117017 gcggcggcggcggtggcggcggagaagccgaagaagaagaaggcgaccaacgagatcgac 116958

                                                                 
Query: 272    gagatcttccaggtcgccaag---tccggcaagaagcgcaagccgcagcag 319
               |||||||||||| | |||||   ||||||||||||||||||| |||||||
Sbjct: 116957 aagatcttccaggccaccaagtcatccggcaagaagcgcaagcagcagcag 116907


>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
            map R2847, complete sequence
          Length = 100918

 Score =  216 bits (109), Expect = 9e-53
 Identities = 145/157 (92%)
 Strand = Plus / Minus

                                                                        
Query: 417  cggacgacgacgaggatgccgaggagaagcggccgcggcggcgcacagcggacgggctcg 476
            ||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 4835 cggacgacgacgacgaagtcgaggagaagcggccgcggcggcgcacggcggacgggctgg 4776

                                                                        
Query: 477  ccgtatactccgccgaggagctcgggttcggcaaggccgacgctggcggcaccgcgctct 536
            |  ||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 4775 cgatatactccgccgacgagctcgggttcggcaagtccgacgccggcggcaccccgctct 4716

                                                 
Query: 537  gccccttcgactgcgactgctgcttctgagccttttc 573
            ||||||||||||||||||||||||||||||| |||||
Sbjct: 4715 gccccttcgactgcgactgctgcttctgagctttttc 4679



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 96/111 (86%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                        
Query: 212  gcggcggcggctgctgcggccaagaagccgaagaagcagaaggcgggcaacgagatcgac 271
            ||||||||||| |  |||||  |||||||||||||| ||||||||  |||||||||||||
Sbjct: 5049 gcggcggcggcggtggcggcggagaagccgaagaagaagaaggcgaccaacgagatcgac 4990

                                                               
Query: 272  gagatcttccaggtcgccaag---tccggcaagaagcgcaagccgcagcag 319
             |||||||||||| | |||||   ||||||||||||||||||| |||||||
Sbjct: 4989 aagatcttccaggccaccaagtcatccggcaagaagcgcaagcagcagcag 4939


>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  216 bits (109), Expect = 9e-53
 Identities = 145/157 (92%)
 Strand = Plus / Minus

                                                                            
Query: 417      cggacgacgacgaggatgccgaggagaagcggccgcggcggcgcacagcggacgggctcg 476
                ||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 27963997 cggacgacgacgacgaagtcgaggagaagcggccgcggcggcgcacggcggacgggctgg 27963938

                                                                            
Query: 477      ccgtatactccgccgaggagctcgggttcggcaaggccgacgctggcggcaccgcgctct 536
                |  ||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 27963937 cgatatactccgccgacgagctcgggttcggcaagtccgacgccggcggcaccccgctct 27963878

                                                     
Query: 537      gccccttcgactgcgactgctgcttctgagccttttc 573
                ||||||||||||||||||||||||||||||| |||||
Sbjct: 27963877 gccccttcgactgcgactgctgcttctgagctttttc 27963841



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 96/111 (86%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                            
Query: 212      gcggcggcggctgctgcggccaagaagccgaagaagcagaaggcgggcaacgagatcgac 271
                ||||||||||| |  |||||  |||||||||||||| ||||||||  |||||||||||||
Sbjct: 27964211 gcggcggcggcggtggcggcggagaagccgaagaagaagaaggcgaccaacgagatcgac 27964152

                                                                   
Query: 272      gagatcttccaggtcgccaag---tccggcaagaagcgcaagccgcagcag 319
                 |||||||||||| | |||||   ||||||||||||||||||| |||||||
Sbjct: 27964151 aagatcttccaggccaccaagtcatccggcaagaagcgcaagcagcagcag 27964101


>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence
          Length = 127914

 Score =  180 bits (91), Expect = 5e-42
 Identities = 121/131 (92%)
 Strand = Plus / Minus

                                                                         
Query: 436   cgaggagaagcggccgcggcggcgcacagcggacgggctcgccgtatactccgccgagga 495
             |||||||||||||||||| |||||||| ||||||||||||| | ||||||| ||||| ||
Sbjct: 33988 cgaggagaagcggccgcgtcggcgcactgcggacgggctcgtcatatactcggccgatga 33929

                                                                         
Query: 496   gctcgggttcggcaaggccgacgctggcggcaccgcgctctgccccttcgactgcgactg 555
             |||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||
Sbjct: 33928 gctcgggttcggcaaggccgacgccggtggcaccccgctgtgccccttcgactgcgactg 33869

                        
Query: 556   ctgcttctgag 566
             |||||||||||
Sbjct: 33868 ctgcttctgag 33858


>emb|X14224.1|ZMMU4 Maize Mu4 transposable element DNA
          Length = 2233

 Score =  129 bits (65), Expect = 2e-26
 Identities = 129/149 (86%), Gaps = 1/149 (0%)
 Strand = Plus / Plus

                                                                       
Query: 419 gacgacgacgaggatgccgaggagaagcggccgcggcggcgcacagcggacgggctcgcc 478
           |||||||| |||||   |||||||||||||||||| ||| |||  |||||||| ||||||
Sbjct: 614 gacgacgaggaggagttcgaggagaagcggccgcgtcggtgcagtgcggacggactcgcc 673

                                                                       
Query: 479 gtatactccgccgaggagctcgggttcggcaaggccgacgctggcggcaccgcgctctgc 538
            ||||||| ||||| |||||||||||| |||||||| |||| || |||||| || | |||
Sbjct: 674 atatactcggccgatgagctcgggttcagcaaggccaacgc-ggtggcaccccgatgtgc 732

                                        
Query: 539 cccttcgactgcgactgctgcttctgagc 567
           || ||||||||||||||||||||||||||
Sbjct: 733 ccgttcgactgcgactgctgcttctgagc 761