BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst002f24 (672 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|DQ244666.1| Zea mays clone 9960 mRNA sequence 462 e-127 ref|NM_202054.2| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN ... 319 8e-84 ref|NM_100651.3| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN ... 319 8e-84 gb|AF332447.1| Arabidopsis thaliana putative ribosomal protein S... 319 8e-84 gb|AY051040.1| Arabidopsis thaliana putative ribosomal protein S... 319 8e-84 >gb|DQ244666.1| Zea mays clone 9960 mRNA sequence Length = 696 Score = 462 bits (233), Expect = e-127 Identities = 362/405 (89%) Strand = Plus / Plus Query: 78 gaggtaaggtaaggatggtgagggttagtgtgctgaatgatgctctcaagagcatgtaca 137 ||||| ||| |||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 88 gaggttaggcaaggatggtgagggttagcgtcctgaacgatgctctcaagagcatgtaca 147 Query: 138 atgctgagaagcgtgggaagaggcaggtcatgatcaggccatcttccaaggtgatcatca 197 | |||||||||||||| ||||||||||| ||||||||||| || || || |||||||||| Sbjct: 148 acgctgagaagcgtggcaagaggcaggtgatgatcaggccctcctcaaaagtgatcatca 207 Query: 198 agttccttctggtcatgcagaagcacggatacattggtgagtttgagtacgtcgatgatc 257 ||||||| | ||||||||||||||||| |||||||||||||||||||| || ||||| | Sbjct: 208 agttcctcatcgtcatgcagaagcacggttacattggtgagtttgagtatgttgatgacc 267 Query: 258 acagatctggcaaaattgtggtcgaattgaatggcaggctgaacaagtgtggtgtcatca 317 ||||||||||||| ||||| || || ||||| ||||| |||||||||||||| ||||||| Sbjct: 268 acagatctggcaagattgttgtggagttgaacggcagactgaacaagtgtggagtcatca 327 Query: 318 gtcctcgctttgatgttggtgtcaaggagattgaaggatggaccgccaggctgcttccat 377 | || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 328 gcccccgctttgatgttggtgtcaaggagatcgagggatggaccgccaggctccttccat 387 Query: 378 ctcggcagtttggttacatcgtgctgacaacttctgctggtatcatggaccatgaggagg 437 |||| |||||||| |||||||| |||||||| |||||||| |||||||| || ||||| | Sbjct: 388 ctcgtcagtttggctacatcgtcctgacaacctctgctggcatcatggatcacgaggaag 447 Query: 438 caaggcgcaagaacgtcggtggcaaagtgctaggctttttctact 482 | ||| | |||||||| |||||||||||||||||||||||||||| Sbjct: 448 ccaggaggaagaacgttggtggcaaagtgctaggctttttctact 492 >ref|NM_202054.2| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome (RPS15A) mRNA, complete cds Length = 723 Score = 319 bits (161), Expect = 8e-84 Identities = 278/317 (87%) Strand = Plus / Plus Query: 116 gatgctctcaagagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 175 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 147 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 206 Query: 176 ccatcttccaaggtgatcatcaagttccttctggtcatgcagaagcacggatacattggt 235 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 207 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 266 Query: 236 gagtttgagtacgtcgatgatcacagatctggcaaaattgtggtcgaattgaatggcagg 295 ||||||||||| |||||||| |||||||||||||| || || || |||||||| || ||| Sbjct: 267 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 326 Query: 296 ctgaacaagtgtggtgtcatcagtcctcgctttgatgttggtgtcaaggagattgaagga 355 |||||||||||||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct: 327 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 386 Query: 356 tggaccgccaggctgcttccatctcggcagtttggttacatcgtgctgacaacttctgct 415 ||||| ||| | |||| || ||| | ||||||||||||||||||||||| || |||||| Sbjct: 387 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 446 Query: 416 ggtatcatggaccatga 432 || || ||||||||||| Sbjct: 447 ggcattatggaccatga 463 >ref|NM_100651.3| Arabidopsis thaliana RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome (RPS15A) mRNA, complete cds Length = 723 Score = 319 bits (161), Expect = 8e-84 Identities = 278/317 (87%) Strand = Plus / Plus Query: 116 gatgctctcaagagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 175 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 147 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 206 Query: 176 ccatcttccaaggtgatcatcaagttccttctggtcatgcagaagcacggatacattggt 235 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 207 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 266 Query: 236 gagtttgagtacgtcgatgatcacagatctggcaaaattgtggtcgaattgaatggcagg 295 ||||||||||| |||||||| |||||||||||||| || || || |||||||| || ||| Sbjct: 267 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 326 Query: 296 ctgaacaagtgtggtgtcatcagtcctcgctttgatgttggtgtcaaggagattgaagga 355 |||||||||||||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct: 327 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 386 Query: 356 tggaccgccaggctgcttccatctcggcagtttggttacatcgtgctgacaacttctgct 415 ||||| ||| | |||| || ||| | ||||||||||||||||||||||| || |||||| Sbjct: 387 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 446 Query: 416 ggtatcatggaccatga 432 || || ||||||||||| Sbjct: 447 ggcattatggaccatga 463 >gb|AF332447.1| Arabidopsis thaliana putative ribosomal protein S15 (At1g07770) mRNA, complete cds Length = 393 Score = 319 bits (161), Expect = 8e-84 Identities = 278/317 (87%) Strand = Plus / Plus Query: 116 gatgctctcaagagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 175 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 25 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 84 Query: 176 ccatcttccaaggtgatcatcaagttccttctggtcatgcagaagcacggatacattggt 235 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 85 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 144 Query: 236 gagtttgagtacgtcgatgatcacagatctggcaaaattgtggtcgaattgaatggcagg 295 ||||||||||| |||||||| |||||||||||||| || || || |||||||| || ||| Sbjct: 145 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 204 Query: 296 ctgaacaagtgtggtgtcatcagtcctcgctttgatgttggtgtcaaggagattgaagga 355 |||||||||||||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct: 205 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 264 Query: 356 tggaccgccaggctgcttccatctcggcagtttggttacatcgtgctgacaacttctgct 415 ||||| ||| | |||| || ||| | ||||||||||||||||||||||| || |||||| Sbjct: 265 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 324 Query: 416 ggtatcatggaccatga 432 || || ||||||||||| Sbjct: 325 ggcattatggaccatga 341 >gb|AY051040.1| Arabidopsis thaliana putative ribosomal protein S15 (At1g07770) mRNA, complete cds Length = 424 Score = 319 bits (161), Expect = 8e-84 Identities = 278/317 (87%) Strand = Plus / Plus Query: 116 gatgctctcaagagcatgtacaatgctgagaagcgtgggaagaggcaggtcatgatcagg 175 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 25 gatgctctcaagagcatgtacaatgctgagaaacgaggcaagaggcaggtcatgatcagg 84 Query: 176 ccatcttccaaggtgatcatcaagttccttctggtcatgcagaagcacggatacattggt 235 || || ||||| ||||| |||||||| || | ||||||||||||||||| ||||||||| Sbjct: 85 ccttcctccaaagtgattatcaagtttctgattgtcatgcagaagcacggttacattggt 144 Query: 236 gagtttgagtacgtcgatgatcacagatctggcaaaattgtggtcgaattgaatggcagg 295 ||||||||||| |||||||| |||||||||||||| || || || |||||||| || ||| Sbjct: 145 gagtttgagtatgtcgatgaccacagatctggcaagatcgtcgttgaattgaacggaagg 204 Query: 296 ctgaacaagtgtggtgtcatcagtcctcgctttgatgttggtgtcaaggagattgaagga 355 |||||||||||||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct: 205 ttgaacaagtgtggtgttatcagcccacgttttgatgttggtgtcaaggaaattgaaggt 264 Query: 356 tggaccgccaggctgcttccatctcggcagtttggttacatcgtgctgacaacttctgct 415 ||||| ||| | |||| || ||| | ||||||||||||||||||||||| || |||||| Sbjct: 265 tggactgcccgtttgctcccttctagacagtttggttacatcgtgctgactacatctgct 324 Query: 416 ggtatcatggaccatga 432 || || ||||||||||| Sbjct: 325 ggcattatggaccatga 341