BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst002f10 (1160 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001064089.1| Oryza sativa (japonica cultivar-group) Os06g... 799 0.0 dbj|AK121989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 761 0.0 gb|AY847062.1| Avena sativa Aux/IAA1 mRNA, partial cds 408 e-110 dbj|AK063854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 335 2e-88 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 301 3e-78 >ref|NM_001064089.1| Oryza sativa (japonica cultivar-group) Os06g0335500 (Os06g0335500) mRNA, complete cds Length = 1273 Score = 799 bits (403), Expect = 0.0 Identities = 606/675 (89%), Gaps = 9/675 (1%) Strand = Plus / Plus Query: 265 ccgctgacgctggagctgctgcccaagggcggggcgaagcgcgggttcgcggacgccatc 324 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 305 ccgctgacgctcgagctgctgcccaagggcggggccaagcgcgggttcgcggacgccatc 364 Query: 325 gtggggggccccgccgggcagaggcgggaggcggcgaggggcaagg---------cggcc 375 || ||||| |||||||| ||| ||||||||||||| ||||||||| |||| Sbjct: 365 gttgggggtcccgccggccagcggcgggaggcggccgggggcaaggcggcggcggcggcg 424 Query: 376 gcagaggaggaggaggaggaggagaagaagaaggcgcaggcgccagcggcaaaggcacag 435 || |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 425 gcggaggccgaggaggaggaggagaagaagaaggcgcaggcgccggcggcgaaggcacag 484 Query: 436 gtggtaggatggccaccaatccgcagttacaggaagaacaccctggcgatgaacctgcct 495 |||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||| Sbjct: 485 gtggtaggatggccaccaatccgcagctacaggaagaacaccatggcgatgagccagcct 544 Query: 496 gctccgaaaagcaaagacgacgatgaggcaaggcaggcgccagcgccagggtgcctcttt 555 |||| |||| |||||||||||| ||||| | |||||| || || | || ||||||| | Sbjct: 545 gctctgaaaggcaaagacgacggcgaggcgaagcaggctccggcatccggttgcctctat 604 Query: 556 gtcaaggttagcatggatggtgctccttacctcaggaaggtggaccttaagatgtacaag 615 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 605 gtcaaggtgagcatggatggtgctccttacctcaggaaggtggacctcaagatgtacaag 664 Query: 616 aactacaaggagctctcgctggcgctggagaaaatgttcagctgctttaccgtcggtcat 675 ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| Sbjct: 665 aactacaaggagctctctttggctctggagaagatgttcagctgctttaccgtcggtcat 724 Query: 676 aatgagtcaaatgggaaatcggggagaggtggattatctgattgccgactgatggatctt 735 ||| ||||||||||| || ||||||| |||||||||||||||||| |||||||||||| Sbjct: 725 ggtgaatcaaatgggaagtcagggagagatggattatctgattgccgcctgatggatctt 784 Query: 736 aaaaatgggactgaacttgtgctcacctatgaggacaaggatggagattggatgcttgtt 795 |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 785 aaaaatggaacagaacttgtgctcacttatgaggacaaggatgaagattggatgcttgtt 844 Query: 796 ggtgatgttccatggggaatgttcacggacagctgtaggagactgaggatcatgaagggg 855 ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 845 ggtgatgttccgtggcgaatgttcacagacagctgtaggaggctgaggattatgaagggg 904 Query: 856 tcagatgcagtgggccttgctccaagagccaccgagaagagcaagaatcagaactaggca 915 |||||||||||||||||||||||||||||||| || |||||||| |||| ||||| ||| Sbjct: 905 tcagatgcagtgggccttgctccaagagccactgacaagagcaaaaatcggaactgagca 964 Query: 916 aacgatgaacccaat 930 || |||||||||||| Sbjct: 965 aaagatgaacccaat 979 Score = 99.6 bits (50), Expect = 2e-17 Identities = 108/127 (85%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 133 ggcatggagccgccactggagcgggactacatcgggctgtcgccagcggtggcggcggcg 192 ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 158 ggcatggcgccgccacaggagcgggactacatcgggctgtcgccggcggcggcggcggcg 217 Query: 193 ------acggagctgcgcctgggcctgccgggaa---cggaggaggccgaggcggagggc 243 |||||||||||||| || |||||||| | |||||||||| ||| |||||||| Sbjct: 218 ctggcaacggagctgcgccttgggctgccggggactgcggaggaggctgagtcggagggc 277 Query: 244 ggtggag 250 || |||| Sbjct: 278 ggcggag 284 >dbj|AK121989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109C03, full insert sequence Length = 1277 Score = 761 bits (384), Expect = 0.0 Identities = 604/678 (89%), Gaps = 12/678 (1%) Strand = Plus / Plus Query: 265 ccgctgacgctggagctgctgcccaagggcggggcgaagcgcgggttcgcggacgccatc 324 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 306 ccgctgacgctcgagctgctgcccaagggcggggccaagcgcgggttcgcggacgccatc 365 Query: 325 gtggggggccccgccgggcagaggcgggaggcggcgaggggcaaggcggccgcagaggag 384 || ||||| |||||||| ||| ||||||||||||| ||||||||||||| || | || | Sbjct: 366 gttgggggtcccgccggccagcggcgggaggcggccgggggcaaggcggcggcggcggcg 425 Query: 385 gaggagga---------ggaggagaagaagaa---ggcgcaggcgccagcggcaaaggca 432 | |||||| ||||||| ||||||| |||||||||||| ||||| |||||| Sbjct: 426 gcggaggaggccgaggaggaggaggagaagaagaaggcgcaggcgccggcggcgaaggca 485 Query: 433 caggtggtaggatggccaccaatccgcagttacaggaagaacaccctggcgatgaacctg 492 ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || | Sbjct: 486 caggtggtaggatggccaccaatccgcagctacaggaagaacaccatggcgatgagccag 545 Query: 493 cctgctccgaaaagcaaagacgacgatgaggcaaggcaggcgccagcgccagggtgcctc 552 ||||||| |||| |||||||||||| ||||| | |||||| || || | || |||||| Sbjct: 546 cctgctctgaaaggcaaagacgacggcgaggcgaagcaggctccggcatccggttgcctc 605 Query: 553 tttgtcaaggttagcatggatggtgctccttacctcaggaaggtggaccttaagatgtac 612 | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 606 tatgtcaaggtgagcatggatggtgctccttacctcaggaaggtggacctcaagatgtac 665 Query: 613 aagaactacaaggagctctcgctggcgctggagaaaatgttcagctgctttaccgtcggt 672 |||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct: 666 aagaactacaaggagctctctttggctctggagaagatgttcagctgctttaccgtcggt 725 Query: 673 cataatgagtcaaatgggaaatcggggagaggtggattatctgattgccgactgatggat 732 ||| ||| ||||||||||| || ||||||| |||||||||||||||||| ||||||||| Sbjct: 726 catggtgaatcaaatgggaagtcagggagagatggattatctgattgccgcctgatggat 785 Query: 733 cttaaaaatgggactgaacttgtgctcacctatgaggacaaggatggagattggatgctt 792 ||||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 786 cttaaaaatggaacagaacttgtgctcacttatgaggacaaggatgaagattggatgctt 845 Query: 793 gttggtgatgttccatggggaatgttcacggacagctgtaggagactgaggatcatgaag 852 |||||||||||||| ||| |||||||||| |||||||||||||| |||||||| |||||| Sbjct: 846 gttggtgatgttccgtggcgaatgttcacagacagctgtaggaggctgaggattatgaag 905 Query: 853 gggtcagatgcagtgggccttgctccaagagccaccgagaagagcaagaatcagaactag 912 ||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||| Sbjct: 906 gggtcagatgcagtgggccttgctccaagagccactgacaagagcaaaaatcggaactga 965 Query: 913 gcaaacgatgaacccaat 930 ||||| |||||||||||| Sbjct: 966 gcaaaagatgaacccaat 983 Score = 99.6 bits (50), Expect = 2e-17 Identities = 108/127 (85%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 133 ggcatggagccgccactggagcgggactacatcgggctgtcgccagcggtggcggcggcg 192 ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 159 ggcatggcgccgccacaggagcgggactacatcgggctgtcgccggcggcggcggcggcg 218 Query: 193 ------acggagctgcgcctgggcctgccgggaa---cggaggaggccgaggcggagggc 243 |||||||||||||| || |||||||| | |||||||||| ||| |||||||| Sbjct: 219 ctggcaacggagctgcgccttgggctgccggggactgcggaggaggctgagtcggagggc 278 Query: 244 ggtggag 250 || |||| Sbjct: 279 ggcggag 285 >gb|AY847062.1| Avena sativa Aux/IAA1 mRNA, partial cds Length = 552 Score = 408 bits (206), Expect = e-110 Identities = 345/390 (88%), Gaps = 1/390 (0%) Strand = Plus / Plus Query: 381 ggaggaggaggaggaggagaagaagaaggcgcaggcgccagcggcaaaggcacaggtggt 440 |||||||||||| || ||||||||||||||||||| ||| || ||||||||||||||||| Sbjct: 152 ggaggaggaggacgacgagaagaagaaggcgcagg-gccggccgcaaaggcacaggtggt 210 Query: 441 aggatggccaccaatccgcagttacaggaagaacaccctggcgatgaacctgcctgctcc 500 |||||||||||||||||||||||| ||||||||||| |||||| || ||| ||||||| Sbjct: 211 aggatggccaccaatccgcagttatcggaagaacaccatggcgacgagcctatctgctcc 270 Query: 501 gaaaagcaaagacgacgatgaggcaaggcaggcgccagcgccagggtgcctctttgtcaa 560 | |||||||||||| | ||||||| ||||||||| | | |||||||||| | |||||| Sbjct: 271 aagaagcaaagacgaggtcgaggcaaagcaggcgcccgtggcagggtgcctatatgtcaa 330 Query: 561 ggttagcatggatggtgctccttacctcaggaaggtggaccttaagatgtacaagaacta 620 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 331 ggttagcatggatggtgcgccttacctcaggaaggtggatcttaagatgtacaagaacta 390 Query: 621 caaggagctctcgctggcgctggagaaaatgttcagctgctttaccgtcggtcataatga 680 |||||| ||||| |||| ||||||||||| ||||||||||||||| || |||||| ||| Sbjct: 391 caaggacctctctctggagctggagaaaaagttcagctgctttactgttggtcatggtga 450 Query: 681 gtcaaatgggaaatcggggagaggtggattatctgattgccgactgatggatcttaaaaa 740 |||||||| |||||||| |||| ||| ||||||||||||||||||||||| | ||||| Sbjct: 451 atcaaatggaaaatcgggaagagatggcttatctgattgccgactgatggaccctaaaag 510 Query: 741 tgggactgaacttgtgctcacctatgagga 770 ||| |||||||||||||||| || ||||| Sbjct: 511 cggggctgaacttgtgctcacatacgagga 540 >dbj|AK063854.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D03, full insert sequence Length = 552 Score = 335 bits (169), Expect = 2e-88 Identities = 229/249 (91%) Strand = Plus / Plus Query: 682 tcaaatgggaaatcggggagaggtggattatctgattgccgactgatggatcttaaaaat 741 ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 10 tcaaatgggaagtcagggagagatggattatctgattgccgcctgatggatcttaaaaat 69 Query: 742 gggactgaacttgtgctcacctatgaggacaaggatggagattggatgcttgttggtgat 801 || || |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 70 ggaacagaacttgtgctcacttatgaggacaaggatgaagattggatgcttgttggtgat 129 Query: 802 gttccatggggaatgttcacggacagctgtaggagactgaggatcatgaaggggtcagat 861 ||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 130 gttccgtggcgaatgttcacagacagctgtaggaggctgaggattatgaaggggtcagat 189 Query: 862 gcagtgggccttgctccaagagccaccgagaagagcaagaatcagaactaggcaaacgat 921 |||||||||||||||||||||||||| || |||||||| |||| ||||| ||||| ||| Sbjct: 190 gcagtgggccttgctccaagagccactgacaagagcaaaaatcggaactgagcaaaagat 249 Query: 922 gaacccaat 930 ||||||||| Sbjct: 250 gaacccaat 258 >dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 301 bits (152), Expect = 3e-78 Identities = 221/244 (90%) Strand = Plus / Plus Query: 429 ggcacaggtggtaggatggccaccaatccgcagttacaggaagaacaccctggcgatgaa 488 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct: 13189404 ggcacaggtggtaggatggccaccaatccgcagctacaggaagaacaccatggcgatgag 13189463 Query: 489 cctgcctgctccgaaaagcaaagacgacgatgaggcaaggcaggcgccagcgccagggtg 548 || |||||||| |||| |||||||||||| ||||| | |||||| || || | || || Sbjct: 13189464 ccagcctgctctgaaaggcaaagacgacggcgaggcgaagcaggctccggcatccggttg 13189523 Query: 549 cctctttgtcaaggttagcatggatggtgctccttacctcaggaaggtggaccttaagat 608 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 13189524 cctctatgtcaaggtgagcatggatggtgctccttacctcaggaaggtggacctcaagat 13189583 Query: 609 gtacaagaactacaaggagctctcgctggcgctggagaaaatgttcagctgctttaccgt 668 |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct: 13189584 gtacaagaactacaaggagctctctttggctctggagaagatgttcagctgctttaccgt 13189643 Query: 669 cggt 672 |||| Sbjct: 13189644 cggt 13189647 Score = 184 bits (93), Expect = 5e-43 Identities = 117/125 (93%) Strand = Plus / Plus Query: 682 tcaaatgggaaatcggggagaggtggattatctgattgccgactgatggatcttaaaaat 741 ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 13190345 tcaaatgggaagtcagggagagatggattatctgattgccgcctgatggatcttaaaaat 13190404 Query: 742 gggactgaacttgtgctcacctatgaggacaaggatggagattggatgcttgttggtgat 801 || || |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 13190405 ggaacagaacttgtgctcacttatgaggacaaggatgaagattggatgcttgttggtgat 13190464 Query: 802 gttcc 806 ||||| Sbjct: 13190465 gttcc 13190469 Score = 155 bits (78), Expect = 5e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 265 ccgctgacgctggagctgctgcccaagggcggggcgaagcgcgggttcgcggacgccatc 324 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 13188448 ccgctgacgctcgagctgctgcccaagggcggggccaagcgcgggttcgcggacgccatc 13188507 Query: 325 gtggggggccccgccgggcagaggcgggaggcggcgaggggcaaggcggc 374 || ||||| |||||||| ||| ||||||||||||| ||||||||||||| Sbjct: 13188508 gttgggggtcccgccggccagcggcgggaggcggccgggggcaaggcggc 13188557 Score = 101 bits (51), Expect = 6e-18 Identities = 60/63 (95%) Strand = Plus / Plus Query: 812 gaatgttcacggacagctgtaggagactgaggatcatgaaggggtcagatgcagtgggcc 871 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 13191083 gaatgttcacagacagctgtaggaggctgaggattatgaaggggtcagatgcagtgggcc 13191142 Query: 872 ttg 874 ||| Sbjct: 13191143 ttg 13191145 Score = 99.6 bits (50), Expect = 2e-17 Identities = 108/127 (85%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 133 ggcatggagccgccactggagcgggactacatcgggctgtcgccagcggtggcggcggcg 192 ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 13188301 ggcatggcgccgccacaggagcgggactacatcgggctgtcgccggcggcggcggcggcg 13188360 Query: 193 ------acggagctgcgcctgggcctgccgggaa---cggaggaggccgaggcggagggc 243 |||||||||||||| || |||||||| | |||||||||| ||| |||||||| Sbjct: 13188361 ctggcaacggagctgcgccttgggctgccggggactgcggaggaggctgagtcggagggc 13188420 Query: 244 ggtggag 250 || |||| Sbjct: 13188421 ggcggag 13188427