BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst001o23
         (526 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)   299   6e-78
ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g...   297   2e-77
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...   297   2e-77
emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa...   297   2e-77
dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN...   297   2e-77

>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score =  299 bits (151), Expect = 6e-78
 Identities = 301/347 (86%), Gaps = 3/347 (0%)
 Strand = Plus / Plus

                                                                       
Query: 74  tttggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccct 133
           |||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||| |||||
Sbjct: 77  tttggcatctgagcccaacagctagcagatggcaggcggcagagttgcacatgcgaccct 136

                                                                       
Query: 134 caagggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctgg 193
           |||||| || ||||||||||||||||||| |||||||  ||||||||||||  |||||||
Sbjct: 137 caaggggccgagcgtggtgaaggagatcttcattggactcacccttgggctggttgctgg 196

                                                                       
Query: 194 tggtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacat 253
           |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 197 tggtatgtggaagatgcatcactggaacgagcagaggaagacccgatccttctacgacat 256

                                                                       
Query: 254 gcttgagaaggggcaaatcagcgtcgtcgttgaggagtagttttgatgtatcaaatctga 313
           ||| ||||||||||| ||||||||||| |||||||||||||| ||| ||    || | ||
Sbjct: 257 gctcgagaaggggcagatcagcgtcgttgttgaggagtagttctgacgtgctgaaccaga 316

                                                                       
Query: 314 agttctatatctc-aagtc-tttgcgtctttgtttttgccagtaatttccaaaactctct 371
           ||||||| ||| | ||||| |||||   || | |||||||||||||||   ||||||  |
Sbjct: 317 agttctacatcgcgaagtcttttgccatttcggttttgccagtaatttgtgaaactccgt 376

                                                          
Query: 372 ggagagcatgaca-agtgagtgccgtggagattgtgatgaaaataag 417
           ||||||||||||| ||||| | | ||||||||||| |||||||||||
Sbjct: 377 ggagagcatgacagagtgatttctgtggagattgtaatgaaaataag 423


>ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g0561000 (Os12g0561000)
           mRNA, complete cds
          Length = 495

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Plus

                                                                       
Query: 77  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 136
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 55  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 114

                                                                       
Query: 137 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 196
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 115 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 174

                                                                       
Query: 197 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 234

                                                 
Query: 257 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 294
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 235 cgagaagggccagatcagtgttgtcgtcgaggagtagt 272


>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Minus

                                                                            
Query: 77       ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 136
                |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 23003497 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 23003438

                                                                            
Query: 137      gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 196
                ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 23003437 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 23003378

                                                                            
Query: 197      tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 256
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23003377 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 23003318

                                                      
Query: 257      tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 294
                 |||||||| || ||||| || ||||| ||||||||||
Sbjct: 23003317 cgagaagggccagatcagtgttgtcgtcgaggagtagt 23003280


>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Minus

                                                                          
Query: 77     ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 136
              |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 112774 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 112715

                                                                          
Query: 137    gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 196
              ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 112714 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 112655

                                                                          
Query: 197    tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 256
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 112595

                                                    
Query: 257    tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 294
               |||||||| || ||||| || ||||| ||||||||||
Sbjct: 112594 cgagaagggccagatcagtgttgtcgtcgaggagtagt 112557


>dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c
           oxidase subunit 5c, complete cds
          Length = 533

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Plus

                                                                       
Query: 77  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 136
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 74  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 133

                                                                       
Query: 137 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 196
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 134 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 193

                                                                       
Query: 197 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 253

                                                 
Query: 257 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 294
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 254 cgagaagggccagatcagtgttgtcgtcgaggagtagt 291