BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf061o08 (1012 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|DQ019637.1| Triticum aestivum mRNA transport factor (Y14) mRN... 573 e-160 dbj|AK243594.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 476 e-131 ref|NM_001061133.1| Oryza sativa (japonica cultivar-group) Os05g... 474 e-130 gb|AY104163.1| Zea mays PCO106378 mRNA sequence 230 9e-57 gb|BT017264.1| Zea mays clone EL01N0309H05.c mRNA sequence 188 3e-44 >gb|DQ019637.1| Triticum aestivum mRNA transport factor (Y14) mRNA, complete cds Length = 978 Score = 573 bits (289), Expect = e-160 Identities = 543/626 (86%), Gaps = 10/626 (1%) Strand = Plus / Plus Query: 52 gcgatggcggcggcggcgatgaacgcggacgtggaggtggtagacttcgactccgacgac 111 |||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||| Sbjct: 59 gcgatggcggcggcggcgatgagcacggacgtggaggcggtcgacttcgactccgacgac 118 Query: 112 gacgacctcatggacgaggacgccggcaccgagccctcgccggcccccgctccccgcctc 171 ||||| |||||||||||||| | | || ||| |||||||| |||||||||||||||||| Sbjct: 119 gacgatctcatggacgaggagggtgccatcgaaccctcgcccgcccccgctccccgcctc 178 Query: 172 cgatccaccatcgcaggcggcggcggcggcgacgacgacgacggcccccgtaagaccaag 231 ||||| ||||||||||| |||||||||| |||||||||| | ||| |||||||| ||| Sbjct: 179 cgatctaccatcgcagggggcggcggcg---acgacgacgatgccccgcgtaagactaag 235 Query: 232 ggccgcgg-ttccgagaggaccctaactcc------gccccccgcgactcgcgcttagcg 284 || ||||| ||||| ||||||||||||||| || | |||||||||||| ||||| Sbjct: 236 gggcgcggcttccgcgaggaccctaactcctcgtccgcgcaccgcgactcgcggttagct 295 Query: 285 ggcgcaggccgcgccgatttcgactccctcgcctccgatggcggccctggccccgtccgc 344 ||||| |||||| | | |||||| ||||||||||||||||||||||||| ||||| ||| Sbjct: 296 ggcgcgggccgctctggcttcgacgccctcgcctccgatggcggccctggacccgtgcgc 355 Query: 345 tccattgaagggtggattgtactggtcactggagttcacgaagaagcccaggaagatgac 404 |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||| Sbjct: 356 tccattgaagggtggattgtactggttactggagttcatgaagaagctcaggaggaggac 415 Query: 405 cttcacaatattttccgggaatacgggcaggtcaagaacttgcatttgaatttggatcgt 464 || || ||||||||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct: 416 ctccataatattttcggggattatgggcaggtcaagaacttgcatttgaatttggatcgc 475 Query: 465 cggactggatttgtcaagggatatgctctgattgaatatgagaactttgaggaagcccag 524 |||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 476 cggactggatttgtgaagggatatgctctaattgagtatgagaactttgagcaagccaag 535 Query: 525 gctgcaataaaagcattggatggaaccgagcttcttacacaattaataaatgttgattgg 584 |||||||| || || || ||||| ||||||||| | || |||||| |||||| ||| Sbjct: 536 cgtgcaataagagaatcagacggaactgagcttctttcgcagataataagtgttgactgg 595 Query: 585 gcatttagtattggccctgtcaaacgcagaaatactcagaagagatcaccgagagatcat 644 |||||||||| |||||||||||| | |||| ||||| ||||||||||||||| | || Sbjct: 596 gcatttagtaatggccctgtcaaccagagaagtactcggaagagatcaccgaggcctaat 655 Query: 645 cgctcaaggagcccacccaggagaag 670 ||||||||||||||||| |||||||| Sbjct: 656 cgctcaaggagcccaccaaggagaag 681 >dbj|AK243594.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100084C05, full insert sequence Length = 927 Score = 476 bits (240), Expect = e-131 Identities = 521/610 (85%), Gaps = 21/610 (3%) Strand = Plus / Plus Query: 36 cccaaccccggcggcggcgatggcggcggcggcgatgaacgcggacgtggaggtggtaga 95 ||||||| ||||||||||| | ||| |||| || ||||| || ||||||| ||| || Sbjct: 69 cccaaccgcggcggcggcggcgatggctgcggtgaccaacgccgatgtggaggcggtcga 128 Query: 96 cttcgactccgacgacgacgacctcatggacgaggacgccggcaccgagccctcgccggc 155 ||||||| |||| |||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct: 129 cttcgaccccgatgacgacgacctcatggacgaggacgccg---ccgaccccacgccggc 185 Query: 156 ccccgctccccgcctccgatccaccatcgcaggcggcggcggcgg------cgacgacga 209 ||||| || |||||||| ||||||||||| |||||||||||||| || || ||| Sbjct: 186 gcccgccccgcgcctccgctccaccatcgcgggcggcggcggcggcggcggcggcggcga 245 Query: 210 cgacggcccccgtaagaccaagggccgcgg-ttccgagaggaccctaactccgccccccg 268 |||||| | || ||||||||||||||||| ||||| || ||| | ||| ||||| Sbjct: 246 cgacgggcaacgcaagaccaagggccgcgggttccgcgacgacgc------cgcgccccg 299 Query: 269 cgactcgcgcttagcgggcgcaggccgcgcc---gatttcgactccctcgcctccgatgg 325 |||||| |||||||| ||||| || |||||| || ||||||||||||| |||||| || Sbjct: 300 cgactcccgcttagccggcgccgggcgcgcctccgacttcgactccctcggctccgacgg 359 Query: 326 cggccctggccccgtccgctccattgaagggtggattgtactggtcactggagttcacga 385 ||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||| || Sbjct: 360 tggccctggccccgtccgatccattgaaggatggattgtgctagtcactggggttcatga 419 Query: 386 agaagcccaggaagatgaccttcacaatattttccgggaatacgggcaggtcaagaactt 445 |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||| Sbjct: 420 agaagctcaggaagatgatcttcacaatattttccgggactttgggcaggtcaagaactt 479 Query: 446 gcatttgaatttggatcgtcggactggatttgtcaagggatatgctctgattgaatatga 505 |||||||||||||||||| || |||||||| || |||||||||||||| ||||| ||||| Sbjct: 480 gcatttgaatttggatcgccgaactggattcgtgaagggatatgctcttattgagtatga 539 Query: 506 gaacttt-gaggaagcccaggctgcaataaaagcattggatggaaccgagcttcttacac 564 |||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 540 -aactttcgaggaagctcaggctgcaataaaagcattggatggaactgagcttctaacac 598 Query: 565 aattaataaatgttgattgggcatttagtattggccctgtcaaacgcagaaatactcaga 624 || | |||| |||||||||||||||||||| |||||||||||| ||||| |||| || || Sbjct: 599 aaatcataagtgttgattgggcatttagtaatggccctgtcaagcgcaggaatattcgga 658 Query: 625 agagatcacc 634 |||||||||| Sbjct: 659 agagatcacc 668 >ref|NM_001061133.1| Oryza sativa (japonica cultivar-group) Os05g0140500 (Os05g0140500) mRNA, complete cds Length = 615 Score = 474 bits (239), Expect = e-130 Identities = 493/573 (86%), Gaps = 21/573 (3%) Strand = Plus / Plus Query: 73 aacgcggacgtggaggtggtagacttcgactccgacgacgacgacctcatggacgaggac 132 ||||| || ||||||| ||| ||||||||| |||| |||||||||||||||||||||||| Sbjct: 16 aacgccgatgtggaggcggtcgacttcgaccccgatgacgacgacctcatggacgaggac 75 Query: 133 gccggcaccgagccctcgccggcccccgctccccgcctccgatccaccatcgcaggcggc 192 |||| |||| ||| ||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct: 76 gccg---ccgaccccacgccggcgcccgccccgcgcctccgctccaccatcgcgggcggc 132 Query: 193 ggcggcgg------cgacgacgacgacggcccccgtaagaccaagggccgcgg-ttccga 245 |||||||| || || ||||||||| | || ||||||||||||||||| ||||| Sbjct: 133 ggcggcggcggcggcggcggcgacgacgggcaacgcaagaccaagggccgcgggttccgc 192 Query: 246 gaggaccctaactccgccccccgcgactcgcgcttagcgggcgcaggccgcgcc---gat 302 || ||| | ||| ||||||||||| |||||||| ||||| || |||||| || Sbjct: 193 gacgacgc------cgcgccccgcgactcccgcttagccggcgccgggcgcgcctccgac 246 Query: 303 ttcgactccctcgcctccgatggcggccctggccccgtccgctccattgaagggtggatt 362 ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||| Sbjct: 247 ttcgactccctcggctccgacggtggccctggccccgtccgatccattgaaggatggatt 306 Query: 363 gtactggtcactggagttcacgaagaagcccaggaagatgaccttcacaatattttccgg 422 || || |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 307 gtgctagtcactggggttcatgaagaagctcaggaagatgatcttcacaatattttccgg 366 Query: 423 gaatacgggcaggtcaagaacttgcatttgaatttggatcgtcggactggatttgtcaag 482 || | ||||||||||||||||||||||||||||||||||| || |||||||| || ||| Sbjct: 367 gactttgggcaggtcaagaacttgcatttgaatttggatcgccgaactggattcgtgaag 426 Query: 483 ggatatgctctgattgaatatgagaacttt-gaggaagcccaggctgcaataaaagcatt 541 ||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||| Sbjct: 427 ggatatgctcttattgagtatga-aactttcgaggaagctcaggctgcaataaaagcatt 485 Query: 542 ggatggaaccgagcttcttacacaattaataaatgttgattgggcatttagtattggccc 601 ||||||||| |||||||| |||||| | |||| |||||||||||||||||||| |||||| Sbjct: 486 ggatggaactgagcttctaacacaaatcataagtgttgattgggcatttagtaatggccc 545 Query: 602 tgtcaaacgcagaaatactcagaagagatcacc 634 |||||| ||||| |||| || |||||||||||| Sbjct: 546 tgtcaagcgcaggaatattcggaagagatcacc 578 >gb|AY104163.1| Zea mays PCO106378 mRNA sequence Length = 1187 Score = 230 bits (116), Expect = 9e-57 Identities = 263/312 (84%) Strand = Plus / Plus Query: 323 tggcggccctggccccgtccgctccattgaagggtggattgtactggtcactggagttca 382 |||||||||||| ||| ||| || |||||||| |||||||| ||||||| |||||||| Sbjct: 378 tggcggccctggacccatccagtcaattgaaggatggattgtgttggtcacaggagttca 437 Query: 383 cgaagaagcccaggaagatgaccttcacaatattttccgggaatacgggcaggtcaagaa 442 ||||||||| || |||||||||||||| ||| ||||| |||| ||||||||||| || Sbjct: 438 cgaagaagctcaagaagatgaccttcaaaatgctttccaagaatttgggcaggtcaaaaa 497 Query: 443 cttgcatttgaatttggatcgtcggactggatttgtcaagggatatgctctgattgaata 502 | |||||||||||||||| || || || |||||||||||||| || ||| |||||||||| Sbjct: 498 cctgcatttgaatttggaccgccgtaccggatttgtcaaggggtacgctttgattgaata 557 Query: 503 tgagaactttgaggaagcccaggctgcaataaaagcattggatggaaccgagcttcttac 562 ||||| ||||| ||||| |||||||||||||||| | |||||||| | |||||| || Sbjct: 558 cgagaagtttgaagaagctcaggctgcaataaaagaactggatggagctgagctttataa 617 Query: 563 acaattaataaatgttgattgggcatttagtattggccctgtcaaacgcagaaatactca 622 |||| ||| | |||||||||||||||||| | |||||||| |||||||||||||||| Sbjct: 618 acaaagaatgagtgttgattgggcatttagcagtggccctgctaaacgcagaaatactcg 677 Query: 623 gaagagatcacc 634 ||| || ||||| Sbjct: 678 gaaaaggtcacc 689 Score = 135 bits (68), Expect = 4e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 47 cggcggcgatggcggcggcggcgatgaacgcggacgtggaggtggtagacttcgactccg 106 |||||||||||||||||||||||| |||||| || ||||||||||| ||||||||| || Sbjct: 125 cggcggcgatggcggcggcggcgacgaacgccgatgtggaggtggtcgacttcgacctcg 184 Query: 107 acgacgacgacctcatggacgaggacgccggcaccgagccctcgccggcccccgctcccc 166 | ||||||||||||||||||||||||||||| | || || | ||| ||||||| ||| Sbjct: 185 atgacgacgacctcatggacgaggacgccgggccggatccagcaccgccccccgcctccc 244 Query: 167 gcctccgatccaccatcgcaggcg 190 ||||||| ||||||||||| |||| Sbjct: 245 gcctccgctccaccatcgcgggcg 268 >gb|BT017264.1| Zea mays clone EL01N0309H05.c mRNA sequence Length = 854 Score = 188 bits (95), Expect = 3e-44 Identities = 239/287 (83%) Strand = Plus / Plus Query: 348 attgaagggtggattgtactggtcactggagttcacgaagaagcccaggaagatgacctt 407 |||||||| |||||||| ||| |||||||||||| |||||||| || ||||||||||| Sbjct: 221 attgaaggatggattgtgttggccactggagttcatgaagaagctcaagaagatgacctc 280 Query: 408 cacaatattttccgggaatacgggcaggtcaagaacttgcatttgaatttggatcgtcgg 467 || ||| ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| Sbjct: 281 caaaatgctttccaagaatttgggcaggtcaaaaacctgcatttgaatttggaccgtcgt 340 Query: 468 actggatttgtcaagggatatgctctgattgaatatgagaactttgaggaagcccaggct 527 || |||||||||||||| || ||| |||||||||||||||| ||||| ||||| |||||| Sbjct: 341 accggatttgtcaaggggtacgctttgattgaatatgagaagtttgaagaagctcaggct 400 Query: 528 gcaataaaagcattggatggaaccgagcttcttacacaattaataaatgttgattgggca 587 |||||||||| | |||||||| | |||||| | |||| ||| | |||||||||||| Sbjct: 401 gcaataaaagaactggatggagctgagctttatgaacaaaaaatgagtgttgattgggcc 460 Query: 588 tttagtattggccctgtcaaacgcagaaatactcagaagagatcacc 634 ||||| | |||||||| || |||||| ||||| ||| |||||||| Sbjct: 461 tttagcagtggccctgctaagcgcagatttactcggaaaagatcacc 507