BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf059k15 (1437 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EF555542.1| Oryza sativa (japonica cultivar-group) hox19 isof... 276 2e-70 gb|EF555541.1| Oryza sativa (indica cultivar-group) hox19 isofor... 244 8e-61 gb|AY554039.1| Oryza sativa (japonica cultivar-group) Hox19 (hox... 218 5e-53 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 218 5e-53 gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome... 218 5e-53 >gb|EF555542.1| Oryza sativa (japonica cultivar-group) hox19 isoform 3 (hox19) mRNA, partial cds, alternatively spliced Length = 339 Score = 276 bits (139), Expect = 2e-70 Identities = 169/179 (94%) Strand = Plus / Plus Query: 526 gacgacgacgacggcagcacgcgcaagaagctgaggctgaccaaggagcagtccgcgctc 585 |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 161 gacgacgacgacgggagcacccgcaagaagctccggctgaccaaggagcagtccgcgctc 220 Query: 586 ctggaggaccgcttcaaggagcacagcaccctcaacccgaagcagaaaatcgctttagcc 645 ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct: 221 ctggaggaccgcttccgggagcacagcacgctcaacccgaagcagaaagtcgctttagcg 280 Query: 646 aagcaactaaacctcaggccaaggcaggtggaggtctggttccaaaacagaagagcaag 704 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 281 aagcaactgaacctcaggccaaggcaggtggaggtctggttccaaaacagaagagcaag 339 >gb|EF555541.1| Oryza sativa (indica cultivar-group) hox19 isoform 2 (hox19) mRNA, partial cds, alternatively spliced Length = 269 Score = 244 bits (123), Expect = 8e-61 Identities = 153/163 (93%) Strand = Plus / Plus Query: 526 gacgacgacgacggcagcacgcgcaagaagctgaggctgaccaaggagcagtccgcgctc 585 |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 107 gacgacgacgacgggagcacccgcaagaagctccggctgaccaaggagcagtccgcgctc 166 Query: 586 ctggaggaccgcttcaaggagcacagcaccctcaacccgaagcagaaaatcgctttagcc 645 ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct: 167 ctggaggaccgcttccgggagcacagcacgctcaacccgaagcagaaagtcgctttagcg 226 Query: 646 aagcaactaaacctcaggccaaggcaggtggaggtctggttcc 688 |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 227 aagcaactgaacctcaggccaaggcaggtggaggtctggttcc 269 >gb|AY554039.1| Oryza sativa (japonica cultivar-group) Hox19 (hox19) gene, exon 3 and partial cds Length = 547 Score = 218 bits (110), Expect = 5e-53 Identities = 128/134 (95%) Strand = Plus / Plus Query: 703 aggacgaagctgaagcagacggaggtggactgtgagttcctgaagcgctgctgtgagacg 762 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 184 aggacaaagctgaagcagacggaggtggactgcgagttcctgaagcgctgctgcgagacg 243 Query: 763 ctcaccgaggagaaccgccgcctgcagcgcgagctgcaggagctccgcgccctcaagttc 822 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 244 ctcaccgaggagaaccgtcggctgcagcgcgagctgcaggagctccgcgcgctcaagttc 303 Query: 823 gccccgccgccgcc 836 |||||||||||||| Sbjct: 304 gccccgccgccgcc 317 Score = 198 bits (100), Expect = 4e-47 Identities = 158/176 (89%), Gaps = 6/176 (3%) Strand = Plus / Plus Query: 882 gccgttttacatgcatctgccggccgccacgctcaccatctgcccgtcctgcgagcgcct 941 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct: 357 gccgttctacatgcaactcccggccgccacgctcaccatctgcccgtcctgcgagcgcgt 416 Query: 942 cggcggccccgcctccgccgccaaggtcgaccctg---acaggcccaaggccggacccgg 998 |||||| ||||| |||||||||||||||| | | | || || |||||||||| ||||| Sbjct: 417 cggcgggcccgcgtccgccgccaaggtcgtcgccgccgacgggaccaaggccggccccgg 476 Query: 999 ccggacca---cccaccacttcttcaaccccttcacccactccgccgcctgctgat 1051 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 477 ccggaccaccacccaccacttcttcaaccccttcacccactccgccgcctgctgat 532 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 218 bits (110), Expect = 5e-53 Identities = 128/134 (95%) Strand = Plus / Plus Query: 703 aggacgaagctgaagcagacggaggtggactgtgagttcctgaagcgctgctgtgagacg 762 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 6900473 aggacaaagctgaagcagacggaggtggactgcgagttcctgaagcgctgctgcgagacg 6900532 Query: 763 ctcaccgaggagaaccgccgcctgcagcgcgagctgcaggagctccgcgccctcaagttc 822 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 6900533 ctcaccgaggagaaccgtcggctgcagcgcgagctgcaggagctccgcgcgctcaagttc 6900592 Query: 823 gccccgccgccgcc 836 |||||||||||||| Sbjct: 6900593 gccccgccgccgcc 6900606 Score = 198 bits (100), Expect = 4e-47 Identities = 158/176 (89%), Gaps = 6/176 (3%) Strand = Plus / Plus Query: 882 gccgttttacatgcatctgccggccgccacgctcaccatctgcccgtcctgcgagcgcct 941 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct: 6900646 gccgttctacatgcaactcccggccgccacgctcaccatctgcccgtcctgcgagcgcgt 6900705 Query: 942 cggcggccccgcctccgccgccaaggtcgaccctg---acaggcccaaggccggacccgg 998 |||||| ||||| |||||||||||||||| | | | || || |||||||||| ||||| Sbjct: 6900706 cggcgggcccgcgtccgccgccaaggtcgtcgccgccgacgggaccaaggccggccccgg 6900765 Query: 999 ccggacca---cccaccacttcttcaaccccttcacccactccgccgcctgctgat 1051 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6900766 ccggaccaccacccaccacttcttcaaccccttcacccactccgccgcctgctgat 6900821 Score = 141 bits (71), Expect = 9e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 526 gacgacgacgacggcagcacgcgcaagaagctgaggctgaccaaggagcagtccgcgctc 585 |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 6899778 gacgacgacgacgggagcacccgcaagaagctccggctgaccaaggagcagtccgcgctc 6899837 Query: 586 ctggaggaccgcttcaaggagcacagcaccctcaacccg 624 ||||||||||||||| |||||||||||| ||||||||| Sbjct: 6899838 ctggaggaccgcttccgggagcacagcacgctcaacccg 6899876 Score = 139 bits (70), Expect = 4e-29 Identities = 79/82 (96%) Strand = Plus / Plus Query: 624 gaagcagaaaatcgctttagccaagcaactaaacctcaggccaaggcaggtggaggtctg 683 |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 6900083 gaagcagaaagtcgctttagcgaagcaactgaacctcaggccaaggcaggtggaggtctg 6900142 Query: 684 gttccaaaacagaagagcaagg 705 |||||||||||||||||||||| Sbjct: 6900143 gttccaaaacagaagagcaagg 6900164 >gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12, complete sequence Length = 120392 Score = 218 bits (110), Expect = 5e-53 Identities = 128/134 (95%) Strand = Plus / Plus Query: 703 aggacgaagctgaagcagacggaggtggactgtgagttcctgaagcgctgctgtgagacg 762 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 98511 aggacaaagctgaagcagacggaggtggactgcgagttcctgaagcgctgctgcgagacg 98570 Query: 763 ctcaccgaggagaaccgccgcctgcagcgcgagctgcaggagctccgcgccctcaagttc 822 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 98571 ctcaccgaggagaaccgtcggctgcagcgcgagctgcaggagctccgcgcgctcaagttc 98630 Query: 823 gccccgccgccgcc 836 |||||||||||||| Sbjct: 98631 gccccgccgccgcc 98644 Score = 198 bits (100), Expect = 4e-47 Identities = 158/176 (89%), Gaps = 6/176 (3%) Strand = Plus / Plus Query: 882 gccgttttacatgcatctgccggccgccacgctcaccatctgcccgtcctgcgagcgcct 941 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct: 98684 gccgttctacatgcaactcccggccgccacgctcaccatctgcccgtcctgcgagcgcgt 98743 Query: 942 cggcggccccgcctccgccgccaaggtcgaccctg---acaggcccaaggccggacccgg 998 |||||| ||||| |||||||||||||||| | | | || || |||||||||| ||||| Sbjct: 98744 cggcgggcccgcgtccgccgccaaggtcgtcgccgccgacgggaccaaggccggccccgg 98803 Query: 999 ccggacca---cccaccacttcttcaaccccttcacccactccgccgcctgctgat 1051 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98804 ccggaccaccacccaccacttcttcaaccccttcacccactccgccgcctgctgat 98859 Score = 141 bits (71), Expect = 9e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 526 gacgacgacgacggcagcacgcgcaagaagctgaggctgaccaaggagcagtccgcgctc 585 |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 97816 gacgacgacgacgggagcacccgcaagaagctccggctgaccaaggagcagtccgcgctc 97875 Query: 586 ctggaggaccgcttcaaggagcacagcaccctcaacccg 624 ||||||||||||||| |||||||||||| ||||||||| Sbjct: 97876 ctggaggaccgcttccgggagcacagcacgctcaacccg 97914 Score = 139 bits (70), Expect = 4e-29 Identities = 79/82 (96%) Strand = Plus / Plus Query: 624 gaagcagaaaatcgctttagccaagcaactaaacctcaggccaaggcaggtggaggtctg 683 |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 98121 gaagcagaaagtcgctttagcgaagcaactgaacctcaggccaaggcaggtggaggtctg 98180 Query: 684 gttccaaaacagaagagcaagg 705 |||||||||||||||||||||| Sbjct: 98181 gttccaaaacagaagagcaagg 98202