BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf053m07 (1133 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EF555522.1| Oryza sativa (indica cultivar-group) hox2 (hox2) ... 462 e-126 ref|NM_001063288.1| Oryza sativa (japonica cultivar-group) Os06g... 462 e-126 gb|AY206864.1| Oryza sativa (indica cultivar-group) homeodomain ... 462 e-126 dbj|AK105150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 462 e-126 gb|AF145726.1|AF145726 Oryza sativa homeodomain leucine zipper p... 462 e-126 >gb|EF555522.1| Oryza sativa (indica cultivar-group) hox2 (hox2) mRNA, partial cds Length = 384 Score = 462 bits (233), Expect = e-126 Identities = 305/329 (92%) Strand = Plus / Plus Query: 320 gacgatgaggacggcgcggacggcgccggcggccgcaagaagctgcggctgtccaaagac 379 ||||| || ||||||||||||||||||||||| || |||||||| |||||||||| ||| Sbjct: 30 gacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggac 89 Query: 380 caggccgccgtgctcgaggagtgcttcaagacgcacagcacgctcaaccccaagcagaag 439 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 90 caggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaag 149 Query: 440 gtagcgctagccaaccggctggggctgcggccgcggcaggtggaggtgtggttccagaac 499 || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 gtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaac 209 Query: 500 cgccgcgcccggaccaagctcaagcagacggaggtcgactgcgagtacctcaagcgctgg 559 || | || |||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 210 cggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgg 269 Query: 560 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 329 Query: 620 ctcaaggccgcgccctcgccggcgtccgc 648 ||||||||||||||||||||||||||||| Sbjct: 330 ctcaaggccgcgccctcgccggcgtccgc 358 >ref|NM_001063288.1| Oryza sativa (japonica cultivar-group) Os06g0140700 (Os06g0140700) mRNA, complete cds Length = 1515 Score = 462 bits (233), Expect = e-126 Identities = 305/329 (92%) Strand = Plus / Plus Query: 320 gacgatgaggacggcgcggacggcgccggcggccgcaagaagctgcggctgtccaaagac 379 ||||| || ||||||||||||||||||||||| || |||||||| |||||||||| ||| Sbjct: 499 gacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggac 558 Query: 380 caggccgccgtgctcgaggagtgcttcaagacgcacagcacgctcaaccccaagcagaag 439 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 559 caggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaag 618 Query: 440 gtagcgctagccaaccggctggggctgcggccgcggcaggtggaggtgtggttccagaac 499 || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 gtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaac 678 Query: 500 cgccgcgcccggaccaagctcaagcagacggaggtcgactgcgagtacctcaagcgctgg 559 || | || |||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 679 cggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgg 738 Query: 560 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 798 Query: 620 ctcaaggccgcgccctcgccggcgtccgc 648 ||||||||||||||||||||||||||||| Sbjct: 799 ctcaaggccgcgccctcgccggcgtccgc 827 Score = 137 bits (69), Expect = 1e-28 Identities = 104/117 (88%), Gaps = 9/117 (7%) Strand = Plus / Plus Query: 796 cggcaacgtcctgcccagccactgccagttcttcccggccg---------ccgccgaccg 846 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1002 cggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccg 1061 Query: 847 gaccagccagagcacgtggaacgccgccgcgccgcttgtcactagagagctcttcta 903 ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1062 gacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttcta 1118 Score = 95.6 bits (48), Expect = 4e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 216 accaggggaggacgtccacctcgccggacagcgccgcggcgctgtccagcgccagcggga 275 ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 401 accaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcggga 460 Query: 276 agagggag 283 |||||||| Sbjct: 461 agagggag 468 Score = 77.8 bits (39), Expect = 9e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 680 gccacgctcacaatgtgcccctcgtgccgccgcgtcgccaccgcgggggcgccgc 734 ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 859 gccacgctcaccatgtgcccctcctgccgccgcgtcgccaccgccggcgcgccgc 913 >gb|AY206864.1| Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds Length = 1519 Score = 462 bits (233), Expect = e-126 Identities = 305/329 (92%) Strand = Plus / Plus Query: 320 gacgatgaggacggcgcggacggcgccggcggccgcaagaagctgcggctgtccaaagac 379 ||||| || ||||||||||||||||||||||| || |||||||| |||||||||| ||| Sbjct: 499 gacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggac 558 Query: 380 caggccgccgtgctcgaggagtgcttcaagacgcacagcacgctcaaccccaagcagaag 439 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 559 caggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaag 618 Query: 440 gtagcgctagccaaccggctggggctgcggccgcggcaggtggaggtgtggttccagaac 499 || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 gtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaac 678 Query: 500 cgccgcgcccggaccaagctcaagcagacggaggtcgactgcgagtacctcaagcgctgg 559 || | || |||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 679 cggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgg 738 Query: 560 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 798 Query: 620 ctcaaggccgcgccctcgccggcgtccgc 648 ||||||||||||||||||||||||||||| Sbjct: 799 ctcaaggccgcgccctcgccggcgtccgc 827 Score = 137 bits (69), Expect = 1e-28 Identities = 104/117 (88%), Gaps = 9/117 (7%) Strand = Plus / Plus Query: 796 cggcaacgtcctgcccagccactgccagttcttcccggccg---------ccgccgaccg 846 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1002 cggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccg 1061 Query: 847 gaccagccagagcacgtggaacgccgccgcgccgcttgtcactagagagctcttcta 903 ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1062 gacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttcta 1118 Score = 95.6 bits (48), Expect = 4e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 216 accaggggaggacgtccacctcgccggacagcgccgcggcgctgtccagcgccagcggga 275 ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 401 accaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcggga 460 Query: 276 agagggag 283 |||||||| Sbjct: 461 agagggag 468 Score = 77.8 bits (39), Expect = 9e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 680 gccacgctcacaatgtgcccctcgtgccgccgcgtcgccaccgcgggggcgccgc 734 ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 859 gccacgctcaccatgtgcccctcctgccgccgcgtcgccaccgccggcgcgccgc 913 >dbj|AK105150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D07, full insert sequence Length = 1391 Score = 462 bits (233), Expect = e-126 Identities = 305/329 (92%) Strand = Plus / Plus Query: 320 gacgatgaggacggcgcggacggcgccggcggccgcaagaagctgcggctgtccaaagac 379 ||||| || ||||||||||||||||||||||| || |||||||| |||||||||| ||| Sbjct: 359 gacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggac 418 Query: 380 caggccgccgtgctcgaggagtgcttcaagacgcacagcacgctcaaccccaagcagaag 439 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 419 caggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaag 478 Query: 440 gtagcgctagccaaccggctggggctgcggccgcggcaggtggaggtgtggttccagaac 499 || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 gtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaac 538 Query: 500 cgccgcgcccggaccaagctcaagcagacggaggtcgactgcgagtacctcaagcgctgg 559 || | || |||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 539 cggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgg 598 Query: 560 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 599 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 658 Query: 620 ctcaaggccgcgccctcgccggcgtccgc 648 ||||||||||||||||||||||||||||| Sbjct: 659 ctcaaggccgcgccctcgccggcgtccgc 687 Score = 137 bits (69), Expect = 1e-28 Identities = 104/117 (88%), Gaps = 9/117 (7%) Strand = Plus / Plus Query: 796 cggcaacgtcctgcccagccactgccagttcttcccggccg---------ccgccgaccg 846 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 862 cggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccg 921 Query: 847 gaccagccagagcacgtggaacgccgccgcgccgcttgtcactagagagctcttcta 903 ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 922 gacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttcta 978 Score = 95.6 bits (48), Expect = 4e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 216 accaggggaggacgtccacctcgccggacagcgccgcggcgctgtccagcgccagcggga 275 ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 261 accaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcggga 320 Query: 276 agagggag 283 |||||||| Sbjct: 321 agagggag 328 Score = 77.8 bits (39), Expect = 9e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 680 gccacgctcacaatgtgcccctcgtgccgccgcgtcgccaccgcgggggcgccgc 734 ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| Sbjct: 719 gccacgctcaccatgtgcccctcctgccgccgcgtcgccaccgccggcgcgccgc 773 >gb|AF145726.1|AF145726 Oryza sativa homeodomain leucine zipper protein (Oshox2) mRNA, partial cds Length = 1272 Score = 462 bits (233), Expect = e-126 Identities = 305/329 (92%) Strand = Plus / Plus Query: 320 gacgatgaggacggcgcggacggcgccggcggccgcaagaagctgcggctgtccaaagac 379 ||||| || ||||||||||||||||||||||| || |||||||| |||||||||| ||| Sbjct: 244 gacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggac 303 Query: 380 caggccgccgtgctcgaggagtgcttcaagacgcacagcacgctcaaccccaagcagaag 439 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 304 caggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaag 363 Query: 440 gtagcgctagccaaccggctggggctgcggccgcggcaggtggaggtgtggttccagaac 499 || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 gtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaac 423 Query: 500 cgccgcgcccggaccaagctcaagcagacggaggtcgactgcgagtacctcaagcgctgg 559 || | || |||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct: 424 cggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgg 483 Query: 560 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 tgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcg 543 Query: 620 ctcaaggccgcgccctcgccggcgtccgc 648 ||||||||||||||||||||||||||||| Sbjct: 544 ctcaaggccgcgccctcgccggcgtccgc 572 Score = 137 bits (69), Expect = 1e-28 Identities = 104/117 (88%), Gaps = 9/117 (7%) Strand = Plus / Plus Query: 796 cggcaacgtcctgcccagccactgccagttcttcccggccg---------ccgccgaccg 846 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 747 cggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccg 806 Query: 847 gaccagccagagcacgtggaacgccgccgcgccgcttgtcactagagagctcttcta 903 ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 807 gacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttcta 863 Score = 95.6 bits (48), Expect = 4e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 216 accaggggaggacgtccacctcgccggacagcgccgcggcgctgtccagcgccagcggga 275 ||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||| Sbjct: 146 accaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcggga 205 Query: 276 agagggag 283 |||||||| Sbjct: 206 agagggag 213