BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf052e11 (1492 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001059417.1| Oryza sativa (japonica cultivar-group) Os04g... 295 3e-76 dbj|AB249661.1| Oryza sativa (japonica cultivar-group) OsRR1 mRN... 295 3e-76 dbj|AK105815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 3e-76 dbj|AK072736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 3e-76 emb|AJ938070.1| Oryza sativa (indica cultivar-group) mRNA for Ty... 287 6e-74 >ref|NM_001059417.1| Oryza sativa (japonica cultivar-group) Os04g0442300 (Os04g0442300) mRNA, complete cds Length = 1808 Score = 295 bits (149), Expect = 3e-76 Identities = 209/229 (91%) Strand = Plus / Plus Query: 743 aggagcaggtcatcgatatggtgctcactgactactgcatgcctgagatgaccggatacg 802 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || | Sbjct: 537 aggagcaggccatcgacatggtgctcaccgactactgcatgcctgagatgactggttatg 596 Query: 803 accttctaaaagccatcaaggcgctgagccccctgaagccgatcccagtgatcgtcatgt 862 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 597 agcttctcaaagccatcaaggcgctgagccctctgaagccgatcccagtgatcgtcatgt 656 Query: 863 cgtcggaaaacgagccccagcggatcagcagatgcttgaaagctggtgctgaggatttca 922 |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| Sbjct: 657 cgtcggaaaacgagccccagaggatcagcagatgcatgaatgctggtgctgaagatttca 716 Query: 923 ttgtgaagcctctccaaagcaaggatgtgcagcgcctgaggaactgctc 971 | || |||||||| ||||||||||| || ||||| || ||||||||||| Sbjct: 717 tcgtaaagcctcttcaaagcaaggacgtacagcgtctcaggaactgctc 765 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 1075 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 1134 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 896 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 955 Query: 1135 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 1194 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 956 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 1015 Query: 1195 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 1242 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1016 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 1063 Score = 133 bits (67), Expect = 2e-27 Identities = 123/141 (87%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 214 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 273 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 379 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 438 Query: 274 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 330 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 439 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 498 Query: 331 ggcggcgatggagttcctcgg 351 | ||| |||||||||||||| Sbjct: 499 gaaggccatggagttcctcgg 519 Score = 131 bits (66), Expect = 9e-27 Identities = 133/153 (86%), Gaps = 8/153 (5%) Strand = Plus / Plus Query: 1348 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1403 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1210 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1269 Query: 1404 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1459 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1270 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1329 Query: 1460 tatctgatgtcctttttggcttggatcttggct 1492 ||||||||||||||||||| | ||||||||||| Sbjct: 1330 tatctgatgtcctttttggttgggatcttggct 1362 >dbj|AB249661.1| Oryza sativa (japonica cultivar-group) OsRR1 mRNA for typeA response regulator 1, complete cds Length = 696 Score = 295 bits (149), Expect = 3e-76 Identities = 209/229 (91%) Strand = Plus / Plus Query: 743 aggagcaggtcatcgatatggtgctcactgactactgcatgcctgagatgaccggatacg 802 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || | Sbjct: 173 aggagcaggccatcgacatggtgctcaccgactactgcatgcctgagatgactggttatg 232 Query: 803 accttctaaaagccatcaaggcgctgagccccctgaagccgatcccagtgatcgtcatgt 862 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 233 agcttctcaaagccatcaaggcgctgagccctctgaagccgatcccagtgatcgtcatgt 292 Query: 863 cgtcggaaaacgagccccagcggatcagcagatgcttgaaagctggtgctgaggatttca 922 |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| Sbjct: 293 cgtcggaaaacgagccccagaggatcagcagatgcatgaatgctggtgctgaagatttca 352 Query: 923 ttgtgaagcctctccaaagcaaggatgtgcagcgcctgaggaactgctc 971 | || |||||||| ||||||||||| || ||||| || ||||||||||| Sbjct: 353 tcgtaaagcctcttcaaagcaaggacgtacagcgtctcaggaactgctc 401 Score = 216 bits (109), Expect = 2e-52 Identities = 151/165 (91%) Strand = Plus / Plus Query: 1075 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 1134 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 532 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 591 Query: 1135 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 1194 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 592 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 651 Query: 1195 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttga 1239 ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 652 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttga 696 Score = 133 bits (67), Expect = 2e-27 Identities = 123/141 (87%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 214 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 273 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 15 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 74 Query: 274 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 330 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 75 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 134 Query: 331 ggcggcgatggagttcctcgg 351 | ||| |||||||||||||| Sbjct: 135 gaaggccatggagttcctcgg 155 >dbj|AK105815.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C10, full insert sequence Length = 1312 Score = 295 bits (149), Expect = 3e-76 Identities = 209/229 (91%) Strand = Plus / Plus Query: 743 aggagcaggtcatcgatatggtgctcactgactactgcatgcctgagatgaccggatacg 802 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || | Sbjct: 339 aggagcaggccatcgacatggtgctcaccgactactgcatgcctgagatgactggttatg 398 Query: 803 accttctaaaagccatcaaggcgctgagccccctgaagccgatcccagtgatcgtcatgt 862 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 399 agcttctcaaagccatcaaggcgctgagccctctgaagccgatcccagtgatcgtcatgt 458 Query: 863 cgtcggaaaacgagccccagcggatcagcagatgcttgaaagctggtgctgaggatttca 922 |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| Sbjct: 459 cgtcggaaaacgagccccagaggatcagcagatgcatgaatgctggtgctgaagatttca 518 Query: 923 ttgtgaagcctctccaaagcaaggatgtgcagcgcctgaggaactgctc 971 | || |||||||| ||||||||||| || ||||| || ||||||||||| Sbjct: 519 tcgtaaagcctcttcaaagcaaggacgtacagcgtctcaggaactgctc 567 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 1075 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 1134 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 698 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 757 Query: 1135 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 1194 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 758 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 817 Query: 1195 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 1242 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 818 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 865 Score = 133 bits (67), Expect = 2e-27 Identities = 123/141 (87%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 214 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 273 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 181 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 240 Query: 274 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 330 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 241 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 300 Query: 331 ggcggcgatggagttcctcgg 351 | ||| |||||||||||||| Sbjct: 301 gaaggccatggagttcctcgg 321 Score = 131 bits (66), Expect = 9e-27 Identities = 133/153 (86%), Gaps = 8/153 (5%) Strand = Plus / Plus Query: 1348 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1403 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1012 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1071 Query: 1404 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1459 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1072 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1131 Query: 1460 tatctgatgtcctttttggcttggatcttggct 1492 ||||||||||||||||||| | ||||||||||| Sbjct: 1132 tatctgatgtcctttttggttgggatcttggct 1164 >dbj|AK072736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139D11, full insert sequence Length = 1808 Score = 295 bits (149), Expect = 3e-76 Identities = 209/229 (91%) Strand = Plus / Plus Query: 743 aggagcaggtcatcgatatggtgctcactgactactgcatgcctgagatgaccggatacg 802 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || | Sbjct: 537 aggagcaggccatcgacatggtgctcaccgactactgcatgcctgagatgactggttatg 596 Query: 803 accttctaaaagccatcaaggcgctgagccccctgaagccgatcccagtgatcgtcatgt 862 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 597 agcttctcaaagccatcaaggcgctgagccctctgaagccgatcccagtgatcgtcatgt 656 Query: 863 cgtcggaaaacgagccccagcggatcagcagatgcttgaaagctggtgctgaggatttca 922 |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| Sbjct: 657 cgtcggaaaacgagccccagaggatcagcagatgcatgaatgctggtgctgaagatttca 716 Query: 923 ttgtgaagcctctccaaagcaaggatgtgcagcgcctgaggaactgctc 971 | || |||||||| ||||||||||| || ||||| || ||||||||||| Sbjct: 717 tcgtaaagcctcttcaaagcaaggacgtacagcgtctcaggaactgctc 765 Score = 222 bits (112), Expect = 3e-54 Identities = 154/168 (91%) Strand = Plus / Plus Query: 1075 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 1134 |||||| | ||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 896 cacttcgctggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 955 Query: 1135 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 1194 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 956 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 1015 Query: 1195 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttgacga 1242 ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1016 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttgacga 1063 Score = 133 bits (67), Expect = 2e-27 Identities = 123/141 (87%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 214 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 273 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 379 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 438 Query: 274 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 330 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 439 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 498 Query: 331 ggcggcgatggagttcctcgg 351 | ||| |||||||||||||| Sbjct: 499 gaaggccatggagttcctcgg 519 Score = 131 bits (66), Expect = 9e-27 Identities = 133/153 (86%), Gaps = 8/153 (5%) Strand = Plus / Plus Query: 1348 aggtagattgtttgctttgagattctaaccgggcg-ttgg---ttcttgacctttggctg 1403 |||||||||||||||||||||||||||||| || | |||| |||||| |||||| || Sbjct: 1210 aggtagattgtttgctttgagattctaacctggagcttggttcttcttggcctttgattg 1269 Query: 1404 atgagagaaggaaggaagaac----ccttgtatccttgtacaaaacgcacaatgatgcag 1459 ||||||| ||| ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct: 1270 atgagaggagggaggaagaaccaatccttgtatccttgtacaaaaagcataatgaggcag 1329 Query: 1460 tatctgatgtcctttttggcttggatcttggct 1492 ||||||||||||||||||| | ||||||||||| Sbjct: 1330 tatctgatgtcctttttggttgggatcttggct 1362 >emb|AJ938070.1| Oryza sativa (indica cultivar-group) mRNA for Type A response regulator 1 (rr1 gene) Length = 696 Score = 287 bits (145), Expect = 6e-74 Identities = 208/229 (90%) Strand = Plus / Plus Query: 743 aggagcaggtcatcgatatggtgctcactgactactgcatgcctgagatgaccggatacg 802 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || || | Sbjct: 173 aggagcaggccatcgacatggtgctcaccgactactgcatgcctgagatgactggttatg 232 Query: 803 accttctaaaagccatcaaggcgctgagccccctgaagccgatcccagtgatcgtcatgt 862 | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 233 agcttctcaaagccatcaaggcgctgagccctctgaagccgatcccagtgatcgtcatgt 292 Query: 863 cgtcggaaaacgagccccagcggatcagcagatgcttgaaagctggtgctgaggatttca 922 |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||| Sbjct: 293 cgtcggaaaacgagccccagaggatcagcagatgcatgaatgctggtgctgaagatttca 352 Query: 923 ttgtgaagcctctccaaagcaaggatgtgcagcgcctgaggaactgctc 971 | || |||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct: 353 tcgtaaagcctcttcaaagcaaggacgtacagcgtctcaggaagtgctc 401 Score = 224 bits (113), Expect = 8e-55 Identities = 152/165 (92%) Strand = Plus / Plus Query: 1075 cacttcaccggaattggcatggtcctgcattcgtcgagggtcgagctctcgcactacttc 1134 |||||| ||||| ||| |||||||||||| |||||||| |||||||| || || |||||| Sbjct: 532 cacttcgccggagttgccatggtcctgcactcgtcgagcgtcgagctgtcacattacttc 591 Query: 1135 cccttcctcttcaagttcatcctgctggtgtacgccatcctatgcctgggtgagctgcta 1194 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 592 cctttcctcttcaagttcatcctgctggtgtacgccatcctgtgcctgggtgagctgctg 651 Query: 1195 cacagatggtcaaacggctgcttcctctccctgtggtgtgcttga 1239 ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 652 cacagatggtcaaacggctgcttcctcaacctgtggtgtgcttga 696 Score = 133 bits (67), Expect = 2e-27 Identities = 123/141 (87%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 214 gggggtgatgagagtgctgctggtggacgactccccggtggacaggagggtggtggagct 273 |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 15 gggggtgacgagggtgctgctggtggacgactcgccggtggacaggagggtggtgcagct 74 Query: 274 gctgctcagcaaca---catgcgccggctccttccatgttatagccgtcgacagcgcgaa 330 || ||||||| || ||||||||||||| ||||| || || |||||||||||||| || Sbjct: 75 cctcctcagcagcagcgcatgcgccggctcattccacgtaatcgccgtcgacagcgccaa 134 Query: 331 ggcggcgatggagttcctcgg 351 | ||| |||||||||||||| Sbjct: 135 gaaggccatggagttcctcgg 155