BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf048n23 (1343 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001073299.1| Oryza sativa (japonica cultivar-group) Os12g... 882 0.0 dbj|AK061316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 874 0.0 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 186 2e-43 emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa... 186 2e-43 dbj|AK104521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 4e-16 >ref|NM_001073299.1| Oryza sativa (japonica cultivar-group) Os12g0480000 (Os12g0480000) mRNA, complete cds Length = 1709 Score = 882 bits (445), Expect = 0.0 Identities = 867/1007 (86%), Gaps = 3/1007 (0%) Strand = Plus / Plus Query: 95 aatggcgtcctcctccgccgccgagccgggtgtccgcctctccgatcgaacg---aggag 151 |||||||||| | |||||||| ||||| || ||||| ||||||| ||| || ||||| Sbjct: 145 aatggcgtccacatccgccgcggagcctggcgtccggttctccgaccgagcggcgaggag 204 Query: 152 gtcgtccttgggcttgagggctatggtgcttatgatgcacgtggtgttcgttggcgccgt 211 |||||| ||||| ||||| | |||||||| ||||||||||||| ||||| |||||||| Sbjct: 205 gtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcggcgccgt 264 Query: 212 cttcctgctcgattcgactctcgataggcgaatccacgaggagccgtggtatataggggt 271 ||||||||||||| |||| ||||| |||||||||| ||||||||| ||||| ||||||| Sbjct: 265 cttcctgctcgatccgaccctcgacaggcgaatccgcgaggagccctggtacataggggc 324 Query: 272 gtatggagtgcttgttctgatcaccttagtgcagtacttctacactgccggttcatctcc 331 ||||||| ||||||| ||||| ||||||||||||| |||||||| || ||||||||||| Sbjct: 325 atatggagcgcttgttttgatcgccttagtgcagtatttctacacagctggttcatctcc 384 Query: 332 agggtatgttattgatgcgatgaaggctggttccacgatgcatgcaaccttcatcaatac 391 ||||||||| | ||||| ||||| |||||||| |||||||| ||||||| ||||||||| Sbjct: 385 tgggtatgttctcgatgcaatgaaagctggttcgacgatgcacgcaacctacatcaatac 444 Query: 392 tgccactctttcaaaacaatccagttcaaaaaacggaagcttaaattcccccatgagccg 451 |||||||||||| |||||||| ||| |||| || || |||||||||||||| |||||| Sbjct: 445 tgccactctttcgaaacaatcaagtccaaacaatggtagcttaaattcccctttgagcct 504 Query: 452 acctcaactagagaaacttaacccagtgacttctacgtcgtcatggttggagcaagttac 511 ||||||| |||||||||| || |||||||| || |||||||| ||| |||| | Sbjct: 505 ccctcaacagcagaaacttaatccgaccacttctacatcaacatggttgcagcgagttgc 564 Query: 512 ggatctttatcctcctgggtcaagcagcagggattggacttgcacttactgcagagtcat 571 || | || || ||||||||||| ||||||||||||||||||||||||||||| || || Sbjct: 565 agaattatacccccctgggtcaagtagcagggattggacttgcacttactgcagggttat 624 Query: 572 tcagccacctcgtactaggcactgccatgattgtgataagtgtgtccttcagtttgatca 631 ||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 625 tcagccacctcgtactaggcattgccatgactgtgacaaatgtgtccttcagtttgatca 684 Query: 632 tcactgcatttggcttggaacatgcattggcaaaaaaaatcattgccgtttttggtggta 691 |||||| |||||||||||||||||||||| ||||| || || ||| | || |||||||| Sbjct: 685 tcactgtgtttggcttggaacatgcattgggaaaaagaaccactgcagattctggtggta 744 Query: 692 catatttgaagaaacaatcttgtgtatctggaccgttgctctgtacatcgagtcgctgca 751 ||||||||||||||||||| || |||||||||| |||||||| ||||| || ||| | | Sbjct: 745 catatttgaagaaacaatcctgagtatctggacagttgctctctacattgactcgatacg 804 Query: 752 tctagatattgacaagacctggtggaaggattttattggtgtaatcttgttggcagtatt 811 | ||||| |||||||| |||||||||||||||||||||| |||||| ||||||| || || Sbjct: 805 tttagatgttgacaaggcctggtggaaggattttattggcgtaatcctgttggctgtgtt 864 Query: 812 gatatttgtcctcttattcctgctgctgctgttgatatttcatacttacattgctcttac 871 ||| ||| | ||| ||||| |||| || ||||||| |||||||||||||| |||||||| Sbjct: 865 gatctttattctcatattcttgctactattgttgatctttcatacttacatcgctcttac 924 Query: 872 aaatcaaacaacctacgaagttgccagaaggaagcggatattctacttaaggggagttcc 931 ||||||||||||||||||||||||| |||||||||||||||||||| | ||||| | || Sbjct: 925 aaatcaaacaacctacgaagttgcccgaaggaagcggatattctacatgaggggtatacc 984 Query: 932 tgacaaagttcatccgttcagtaaaggcatctgtagaaacatctacaacttctgcttcta 991 |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 985 cgacaaagttcatccattcagtaaaggcatctgtaggaacatctacgtcttctgcttctc 1044 Query: 992 tagagagaagggatttgttctggaagctgttcccccacttcaggagctggaagccagagc 1051 |||| ||||||||| || ||| |||| || ||||||||| | ||| ||||||||||||| Sbjct: 1045 tagacagaagggatatgatctagaagaggtgcccccacttgaagagttggaagccagagc 1104 Query: 1052 tgctccttacacatgccgagatataatttgctgccggtgctgttgat 1098 |||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 1105 tgctccctacacatgccgcgatataatctgctgccggtgctgttgat 1151 >dbj|AK061316.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D08, full insert sequence Length = 1709 Score = 874 bits (441), Expect = 0.0 Identities = 866/1007 (85%), Gaps = 3/1007 (0%) Strand = Plus / Plus Query: 95 aatggcgtcctcctccgccgccgagccgggtgtccgcctctccgatcgaacg---aggag 151 |||||||||| | |||||||| ||||| || ||||| ||||||| ||| || ||||| Sbjct: 145 aatggcgtccacatccgccgcggagcctggcgtccggttctccgaccgagcggcgaggag 204 Query: 152 gtcgtccttgggcttgagggctatggtgcttatgatgcacgtggtgttcgttggcgccgt 211 |||||| ||||| ||||| | |||||||| ||||||||||||| ||||| |||||||| Sbjct: 205 gtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcggcgccgt 264 Query: 212 cttcctgctcgattcgactctcgataggcgaatccacgaggagccgtggtatataggggt 271 ||||||||||||| |||| ||||| |||||||||| ||||||||| ||||| ||||||| Sbjct: 265 cttcctgctcgatccgaccctcgacaggcgaatccgcgaggagccctggtacataggggc 324 Query: 272 gtatggagtgcttgttctgatcaccttagtgcagtacttctacactgccggttcatctcc 331 ||||||| ||||||| ||||| ||||||||||||| |||||||| || ||||||||||| Sbjct: 325 atatggagcgcttgttttgatcgccttagtgcagtatttctacacagctggttcatctcc 384 Query: 332 agggtatgttattgatgcgatgaaggctggttccacgatgcatgcaaccttcatcaatac 391 ||||||||| | ||||| ||||| |||||||| |||||||| ||||||| ||||||||| Sbjct: 385 tgggtatgttctcgatgcaatgaaagctggttcgacgatgcacgcaacctacatcaatac 444 Query: 392 tgccactctttcaaaacaatccagttcaaaaaacggaagcttaaattcccccatgagccg 451 |||||||||||| ||| |||| ||| |||| || || |||||||||||||| |||||| Sbjct: 445 tgccactctttcgaaataatcaagtccaaacaatggtagcttaaattcccctttgagcct 504 Query: 452 acctcaactagagaaacttaacccagtgacttctacgtcgtcatggttggagcaagttac 511 ||||||| |||||||||| || |||||||| || |||||||| ||| |||| | Sbjct: 505 ccctcaacagcagaaacttaatccgaccacttctacatcaacatggttgcagcgagttgc 564 Query: 512 ggatctttatcctcctgggtcaagcagcagggattggacttgcacttactgcagagtcat 571 || | || || ||||||||||| ||||||||||||||||||||||||||||| || || Sbjct: 565 agaattatacccccctgggtcaagtagcagggattggacttgcacttactgcagggttat 624 Query: 572 tcagccacctcgtactaggcactgccatgattgtgataagtgtgtccttcagtttgatca 631 ||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 625 tcagccacctcgtactaggcattgccatgactgtgacaaatgtgtccttcagtttgatca 684 Query: 632 tcactgcatttggcttggaacatgcattggcaaaaaaaatcattgccgtttttggtggta 691 |||||| |||||||||||||||||||||| ||||| || || ||| | || |||||||| Sbjct: 685 tcactgtgtttggcttggaacatgcattgggaaaaagaaccactgcagattctggtggta 744 Query: 692 catatttgaagaaacaatcttgtgtatctggaccgttgctctgtacatcgagtcgctgca 751 ||||||||||||||||||| || |||||||||| |||||||| ||||| || ||| | | Sbjct: 745 catatttgaagaaacaatcctgagtatctggacagttgctctctacattgactcgatacg 804 Query: 752 tctagatattgacaagacctggtggaaggattttattggtgtaatcttgttggcagtatt 811 | ||||| |||||||| |||||||||||||||||||||| |||||| ||||||| || || Sbjct: 805 tttagatgttgacaaggcctggtggaaggattttattggcgtaatcctgttggctgtgtt 864 Query: 812 gatatttgtcctcttattcctgctgctgctgttgatatttcatacttacattgctcttac 871 ||| ||| | ||| ||||| |||| || ||||||| |||||||||||||| |||||||| Sbjct: 865 gatctttattctcatattcttgctactattgttgatctttcatacttacatcgctcttac 924 Query: 872 aaatcaaacaacctacgaagttgccagaaggaagcggatattctacttaaggggagttcc 931 ||||||||||||||||||||||||| |||||||||||||||||||| | ||||| | || Sbjct: 925 aaatcaaacaacctacgaagttgcccgaaggaagcggatattctacatgaggggtatacc 984 Query: 932 tgacaaagttcatccgttcagtaaaggcatctgtagaaacatctacaacttctgcttcta 991 |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 985 cgacaaagttcatccattcagtaaaggcatctgtaggaacatctacgtcttctgcttctc 1044 Query: 992 tagagagaagggatttgttctggaagctgttcccccacttcaggagctggaagccagagc 1051 |||| ||||||||| || ||| |||| || ||||||||| | ||| ||||||||||||| Sbjct: 1045 tagacagaagggatatgatctagaagaggtgcccccacttgaagagttggaagccagagc 1104 Query: 1052 tgctccttacacatgccgagatataatttgctgccggtgctgttgat 1098 |||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 1105 tgctccctacacatgccgcgatataatctgctgccggtgctgttgat 1151 >dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 186 bits (94), Expect = 2e-43 Identities = 148/166 (89%) Strand = Plus / Plus Query: 933 gacaaagttcatccgttcagtaaaggcatctgtagaaacatctacaacttctgcttctat 992 |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| | Sbjct: 17664152 gacaaagttcatccattcagtaaaggcatctgtaggaacatctacgtcttctgcttctct 17664211 Query: 993 agagagaagggatttgttctggaagctgttcccccacttcaggagctggaagccagagct 1052 ||| ||||||||| || ||| |||| || ||||||||| | ||| |||||||||||||| Sbjct: 17664212 agacagaagggatatgatctagaagaggtgcccccacttgaagagttggaagccagagct 17664271 Query: 1053 gctccttacacatgccgagatataatttgctgccggtgctgttgat 1098 ||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 17664272 gctccctacacatgccgcgatataatctgctgccggtgctgttgat 17664317 Score = 133 bits (67), Expect = 2e-27 Identities = 88/95 (92%) Strand = Plus / Plus Query: 573 cagccacctcgtactaggcactgccatgattgtgataagtgtgtccttcagtttgatcat 632 |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| Sbjct: 17662393 cagccacctcgtactaggcattgccatgactgtgacaaatgtgtccttcagtttgatcat 17662452 Query: 633 cactgcatttggcttggaacatgcattggcaaaaa 667 ||||| |||||||||||||||||||||| ||||| Sbjct: 17662453 cactgtgtttggcttggaacatgcattgggaaaaa 17662487 Score = 123 bits (62), Expect = 2e-24 Identities = 104/118 (88%) Strand = Plus / Plus Query: 145 cgaggaggtcgtccttgggcttgagggctatggtgcttatgatgcacgtggtgttcgttg 204 ||||||||||||| ||||| ||||| | |||||||| ||||||||||||| ||||| | Sbjct: 17660590 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 17660649 Query: 205 gcgccgtcttcctgctcgattcgactctcgataggcgaatccacgaggagccgtggta 262 |||||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||||| Sbjct: 17660650 gcgccgtcttcctgctcgatccgaccctcgacaggcgaatccgcgaggagccctggta 17660707 Score = 105 bits (53), Expect = 5e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 857 ttacattgctcttacaaatcaaacaacctacgaagttgccagaaggaagcggatattcta 916 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 17663991 ttacatcgctcttacaaatcaaacaacctacgaagttgcccgaaggaagcggatattcta 17664050 Query: 917 c 917 | Sbjct: 17664051 c 17664051 Score = 83.8 bits (42), Expect = 2e-12 Identities = 63/70 (90%) Strand = Plus / Plus Query: 334 ggtatgttattgatgcgatgaaggctggttccacgatgcatgcaaccttcatcaatactg 393 |||||||| | ||||| ||||| |||||||| |||||||| ||||||| ||||||||||| Sbjct: 17661340 ggtatgttctcgatgcaatgaaagctggttcgacgatgcacgcaacctacatcaatactg 17661399 Query: 394 ccactctttc 403 |||||||||| Sbjct: 17661400 ccactctttc 17661409 Score = 83.8 bits (42), Expect = 2e-12 Identities = 78/90 (86%) Strand = Plus / Plus Query: 685 ggtggtacatatttgaagaaacaatcttgtgtatctggaccgttgctctgtacatcgagt 744 |||||||||||||||||||||||||| || |||||||||| |||||||| ||||| || | Sbjct: 17663127 ggtggtacatatttgaagaaacaatcctgagtatctggacagttgctctctacattgact 17663186 Query: 745 cgctgcatctagatattgacaagacctggt 774 || | | | ||||| |||||||| |||||| Sbjct: 17663187 cgatacgtttagatgttgacaaggcctggt 17663216 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 259 ggtatataggggtgtatggagtgcttgttctgatcaccttagtgcagtacttctacactg 318 |||| ||||||| ||||||| ||||||| ||||| ||||||||||||| |||||||| | Sbjct: 17661180 ggtacataggggcatatggagcgcttgttttgatcgccttagtgcagtatttctacacag 17661239 Query: 319 ccggttcatctccagggtatg 339 | ||||||||||| ||||||| Sbjct: 17661240 ctggttcatctcctgggtatg 17661260 >emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 186 bits (94), Expect = 2e-43 Identities = 148/166 (89%) Strand = Plus / Plus Query: 933 gacaaagttcatccgttcagtaaaggcatctgtagaaacatctacaacttctgcttctat 992 |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| | Sbjct: 156488 gacaaagttcatccattcagtaaaggcatctgtaggaacatctacgtcttctgcttctct 156547 Query: 993 agagagaagggatttgttctggaagctgttcccccacttcaggagctggaagccagagct 1052 ||| ||||||||| || ||| |||| || ||||||||| | ||| |||||||||||||| Sbjct: 156548 agacagaagggatatgatctagaagaggtgcccccacttgaagagttggaagccagagct 156607 Query: 1053 gctccttacacatgccgagatataatttgctgccggtgctgttgat 1098 ||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 156608 gctccctacacatgccgcgatataatctgctgccggtgctgttgat 156653 Score = 133 bits (67), Expect = 2e-27 Identities = 88/95 (92%) Strand = Plus / Plus Query: 573 cagccacctcgtactaggcactgccatgattgtgataagtgtgtccttcagtttgatcat 632 |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| Sbjct: 154729 cagccacctcgtactaggcattgccatgactgtgacaaatgtgtccttcagtttgatcat 154788 Query: 633 cactgcatttggcttggaacatgcattggcaaaaa 667 ||||| |||||||||||||||||||||| ||||| Sbjct: 154789 cactgtgtttggcttggaacatgcattgggaaaaa 154823 Score = 123 bits (62), Expect = 2e-24 Identities = 104/118 (88%) Strand = Plus / Plus Query: 145 cgaggaggtcgtccttgggcttgagggctatggtgcttatgatgcacgtggtgttcgttg 204 ||||||||||||| ||||| ||||| | |||||||| ||||||||||||| ||||| | Sbjct: 152926 cgaggaggtcgtcgctgggcctgaggtcgatggtgctcctgatgcacgtggtcttcgtcg 152985 Query: 205 gcgccgtcttcctgctcgattcgactctcgataggcgaatccacgaggagccgtggta 262 |||||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||||| Sbjct: 152986 gcgccgtcttcctgctcgatccgaccctcgacaggcgaatccgcgaggagccctggta 153043 Score = 105 bits (53), Expect = 5e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 857 ttacattgctcttacaaatcaaacaacctacgaagttgccagaaggaagcggatattcta 916 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 156327 ttacatcgctcttacaaatcaaacaacctacgaagttgcccgaaggaagcggatattcta 156386 Query: 917 c 917 | Sbjct: 156387 c 156387 Score = 83.8 bits (42), Expect = 2e-12 Identities = 63/70 (90%) Strand = Plus / Plus Query: 334 ggtatgttattgatgcgatgaaggctggttccacgatgcatgcaaccttcatcaatactg 393 |||||||| | ||||| ||||| |||||||| |||||||| ||||||| ||||||||||| Sbjct: 153676 ggtatgttctcgatgcaatgaaagctggttcgacgatgcacgcaacctacatcaatactg 153735 Query: 394 ccactctttc 403 |||||||||| Sbjct: 153736 ccactctttc 153745 Score = 83.8 bits (42), Expect = 2e-12 Identities = 78/90 (86%) Strand = Plus / Plus Query: 685 ggtggtacatatttgaagaaacaatcttgtgtatctggaccgttgctctgtacatcgagt 744 |||||||||||||||||||||||||| || |||||||||| |||||||| ||||| || | Sbjct: 155463 ggtggtacatatttgaagaaacaatcctgagtatctggacagttgctctctacattgact 155522 Query: 745 cgctgcatctagatattgacaagacctggt 774 || | | | ||||| |||||||| |||||| Sbjct: 155523 cgatacgtttagatgttgacaaggcctggt 155552 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 259 ggtatataggggtgtatggagtgcttgttctgatcaccttagtgcagtacttctacactg 318 |||| ||||||| ||||||| ||||||| ||||| ||||||||||||| |||||||| | Sbjct: 153516 ggtacataggggcatatggagcgcttgttttgatcgccttagtgcagtatttctacacag 153575 Query: 319 ccggttcatctccagggtatg 339 | ||||||||||| ||||||| Sbjct: 153576 ctggttcatctcctgggtatg 153596 >dbj|AK104521.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E08, full insert sequence Length = 1360 Score = 95.6 bits (48), Expect = 4e-16 Identities = 159/196 (81%) Strand = Plus / Plus Query: 512 ggatctttatcctcctgggtcaagcagcagggattggacttgcacttactgcagagtcat 571 |||||| |||||||||||| || || |||||||| || ||| |||||||| | |||| Sbjct: 576 ggatctatatcctcctgggacatccaccagggatttcacatgctcttactgccggctcat 635 Query: 572 tcagccacctcgtactaggcactgccatgattgtgataagtgtgtccttcagtttgatca 631 ||||| || || || | |||||| ||||| |||||||| |||||||| || |||||||| Sbjct: 636 ccagcctccacgcaccaagcactgtcatgactgtgataaatgtgtcctccaatttgatca 695 Query: 632 tcactgcatttggcttggaacatgcattggcaaaaaaaatcattgccgtttttggtggta 691 ||| || ||||||||||||||||||||| |||| || | ||| | ||||||||||| Sbjct: 696 tcattgtgtttggcttggaacatgcattgctaaaaggaactactgcagattttggtggta 755 Query: 692 catatttgaagaaaca 707 |||||| ||| ||||| Sbjct: 756 catattcgaacaaaca 771