BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf047g13 (1062 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding p... 1144 0.0 gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulga... 983 0.0 gb|AY106149.1| Zea mays PCO102434 mRNA sequence 969 0.0 gb|DQ244416.1| Zea mays clone 7327 mRNA sequence 961 0.0 ref|NM_001064048.1| Oryza sativa (japonica cultivar-group) Os06g... 846 0.0 >gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 1144 bits (577), Expect = 0.0 Identities = 694/733 (94%) Strand = Plus / Plus Query: 48 agcaacaatggcgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgcc 107 |||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 34 agcagcaatggctatggcgtcgtcaagcgggctcaggagctgcagcgccgtgggcgtgcc 93 Query: 108 gagcctgctggcgccgtcgtcccggtccggccggtccgggctgccgttctgcgcctacgc 167 ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 94 gagcctgctggcgccttcgtcccggtccggccgctccggactgccgttctgcgcctacgc 153 Query: 168 caccacctccggccgcgtcaccatgtccgccgagtggttccccggccagccccgccccgc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 caccacctccggccgcgtcaccatgtccgccgagtggttccccggccagccccgccccgc 213 Query: 228 ccacctcgacggctcctcgcccggggacttcgggttcgacccgctgggcctcggcaccgt 287 ||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||||| Sbjct: 214 ccatctggacggctcctcgccaggggacttcgggttcgaccccctgggcctcgccaccgt 273 Query: 288 gccggagaacttcgagcggttcaaggagtccgaggtctaccactgccgttgggccatgct 347 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 274 gccggagaacttcgagcggttcaaggagtccgagatctaccactgccgctgggccatgct 333 Query: 348 ctgcgtgcctggggtgttggtgccggaggcgctggggctgggcaactgggtgaaggcgca 407 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 ctgcgtgccaggggtgctggtgccggaggcgctggggctgggcaactgggtgaaggcgca 393 Query: 408 ggagtgggcggcggtccccggcgggcaggcgacctacttcggcgtcccggtgccgtgggg 467 ||||||||||||| |||| | |||||||||||| ||| | ||| ||||||||||||||| Sbjct: 394 ggagtgggcggcgctcccagacgggcaggcgacgtacctgggcaacccggtgccgtgggg 453 Query: 468 caacctgccgaccatcctggcgatcgagttcctcgccatcgcgttcgcggagcaccagcg 527 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 454 caacctgccgaccatcctggcgatcgagttcctggccatcgccttcgcggagcagcagcg 513 Query: 528 caccatggagaaggaccccgagaaaaagaagtaccccggcggcgccttcgacccgctcgg 587 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 514 caccatggagaaggacccggagaagaagaagtaccccggcggcgccttcgacccgctcgg 573 Query: 588 cttctccaaggaccccgtcaagttggaggagtacaagctcaaggagatcaagaacgggcg 647 ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| Sbjct: 574 cttctccaaggaccccgccaagttcgaggagctcaagctcaaggagatcaagaacgggcg 633 Query: 648 gctggcgatgcttgcgttcgtcgggttctgcgtgcagcagtcggcgtaccccggcaccgg 707 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 634 gctggcgatgctggcgttcgtggggttctgcgtgcagcagtcggcgtaccccggcaccgg 693 Query: 708 cccgctggagaacctggcctcccacctggcggacccgtggcacaacaacatcggcgacgt 767 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| | Sbjct: 694 cccgctggagaacctggccacgcacctcgcggacccgtggcacaacaacatcggcgacat 753 Query: 768 cgtcatccccaga 780 ||||||||||||| Sbjct: 754 cgtcatccccaga 766 >gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 983 bits (496), Expect = 0.0 Identities = 612/648 (94%), Gaps = 2/648 (0%) Strand = Plus / Plus Query: 134 ccggccggtccgggctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgt 193 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 ccggccgctccggactgccgttctgcgcctacgccaccacctccggccgcgtcaccatgt 61 Query: 194 ccgccgagtggttccccggccagccccgccccgcccacctcgacggctcctcgccc-ggg 252 ||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||| Sbjct: 62 ccgccgagtggttccccggccagccccgccccgcccatctggccggctcctcgccaaggg 121 Query: 253 gacttcgggttcgacccgctgggcctcggcaccgtgccggagaacttcgagcggttcaag 312 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 122 gacttcgggttcgaccc-ctgggcctcgccaccgtgccggagaacttcgagcggttcaag 180 Query: 313 gagtccgaggtctaccactgccgttgggccatgctctgcgtgcctggggtgttggtgccg 372 ||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||| Sbjct: 181 gagtccgagatctaccactgccgctgggccatgctctgcgtgccaggggtgctggtgccg 240 Query: 373 gaggcgctggggctgggcaactgggtgaaggcgcaggagtgggcggcggtccccggcggg 432 |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| Sbjct: 241 gaggcgctggggctgggcaactgggtgaaggcgcaggagtgggcggcgctcccagacggg 300 Query: 433 caggcgacctacttcggcgtcccggtgccgtggggcaacctgccgaccatcctggcgatc 492 |||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 301 caggcgacgtacctgggcaacccggtgccgtggggcaacctgccgaccatcctggcgatc 360 Query: 493 gagttcctcgccatcgcgttcgcggagcaccagcgcaccatggagaaggaccccgagaaa 552 |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 361 gagttcctggccatcgccttcgcggagcagcagcgcaccatggagaaggacccggagaag 420 Query: 553 aagaagtaccccggcggcgccttcgacccgctcggcttctccaaggaccccgtcaagttg 612 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 421 aagaagtaccccggcggcgccttcgacccgctcggcttctccaaggaccccgccaagttc 480 Query: 613 gaggagtacaagctcaaggagatcaagaacgggcggctggcgatgcttgcgttcgtcggg 672 |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 481 gaggagctcaagctcaaggagatcaagaacgggcggctggcgatgctggcgttcgtgggg 540 Query: 673 ttctgcgtgcagcagtcggcgtaccccggcaccggcccgctggagaacctggcctcccac 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct: 541 ttctgcgtgcagcagtcggcgtaccccggcaccggcccgctggagaacctggccacgcac 600 Query: 733 ctggcggacccgtggcacaacaacatcggcgacgtcgtcatccccaga 780 || |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 601 ctcgcggacccgtggcacaacaacatcggcgacatcgtcatccccaga 648 >gb|AY106149.1| Zea mays PCO102434 mRNA sequence Length = 1081 Score = 969 bits (489), Expect = 0.0 Identities = 688/752 (91%), Gaps = 3/752 (0%) Strand = Plus / Plus Query: 47 aagcaacaatggcgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgc 106 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57 aagcagcaatggtgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgc 116 Query: 107 cgagcctgctggcgccgtcgtcccggtccggccggtccgggctgccgttctgcgcctacg 166 | |||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||| Sbjct: 117 ccagcctgctggcgccgtcgtcccggtccggccg--cctggc-gccgttctgcgccaacg 173 Query: 167 ccaccacctccggccgcgtcaccatgtccgccgagtggttccccggccagccccgccccg 226 |||||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||| | Sbjct: 174 ccaccacctctggccgcgtcaccatgtccgcggagtggatgcccggccagccacgccctg 233 Query: 227 cccacctcgacggctcctcgcccggggacttcgggttcgacccgctgggcctcggcaccg 286 ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||| Sbjct: 234 cccacctcgacggctcctctcccggggacttcggcttcgatccgctgggcctcgcgaccg 293 Query: 287 tgccggagaacttcgagcggttcaaggagtccgaggtctaccactgccgttgggccatgc 346 ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 294 tgccggagaacttcgagcggttcaaggagtcagaggtgtaccactgccgctgggccatgc 353 Query: 347 tctgcgtgcctggggtgttggtgccggaggcgctggggctgggcaactgggtgaaggcgc 406 | ||| || ||| | |||||||||| || ||||| |||||||||||||||||||||| Sbjct: 354 ttgccgtccccgggatcctggtgccggaagctctgggcctgggcaactgggtgaaggcgc 413 Query: 407 aggagtgggcggcggtccccggcgggcaggcgacctacttcggcgtcccggtgccgtggg 466 ||||||||||||| ||||||||||||||||| || ||| | |||| |||||||||||||| Sbjct: 414 aggagtgggcggccgtccccggcgggcaggccacgtacctgggcgccccggtgccgtggg 473 Query: 467 gcaacctgccgaccatcctggcgatcgagttcctcgccatcgcgttcgcggagcaccagc 526 ||| |||||||||||||||| |||||||||| | |||||||| ||||| |||||||||| Sbjct: 474 gcacgctgccgaccatcctggtgatcgagttcgtggccatcgccttcgccgagcaccagc 533 Query: 527 gcaccatggagaaggaccccgagaaaaagaagtaccccggcggcgccttcgacccgctcg 586 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 534 gcaccatggagaaggaccccgagaagaagaagtaccccggcggcgccttcgacccgctcg 593 Query: 587 gcttctccaaggaccccgtcaagttggaggagtacaagctcaaggagatcaagaacgggc 646 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct: 594 gcttctccaaggaccccgccaagttcgaggagtacaagctcaaggagatcaagaacggcc 653 Query: 647 ggctggcgatgcttgcgttcgtcgggttctgcgtgcagcagtcggcgtaccccggcaccg 706 | || || ||||| || |||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 654 gcctcgccatgctggccttcgtcggcttctgcgtccagcagtcggcgtaccccggcaccg 713 Query: 707 gcccgctggagaacctggcctcccacctggcggacccgtggcacaacaacatcggcgacg 766 |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 714 gcccgctggagaacctcgcctcccacctcgccgacccgtggcacaacaacatcggcgaca 773 Query: 767 tcgtcatccccagatccatctacccttgagct 798 || ||||||||||||| |||| |||||||||| Sbjct: 774 tcatcatccccagatcaatctccccttgagct 805 >gb|DQ244416.1| Zea mays clone 7327 mRNA sequence Length = 1019 Score = 961 bits (485), Expect = 0.0 Identities = 687/752 (91%), Gaps = 3/752 (0%) Strand = Plus / Plus Query: 47 aagcaacaatggcgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgc 106 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52 aagcagcaatggtgatggcgtcgtcgagcgggctgaggagctgcagcgccgtgggcgtgc 111 Query: 107 cgagcctgctggcgccgtcgtcccggtccggccggtccgggctgccgttctgcgcctacg 166 | |||||||||||||||||||||||||||||||| || ||| ||| ||||||||| ||| Sbjct: 112 ccagcctgctggcgccgtcgtcccggtccggccg--cctggc-gccattctgcgccaacg 168 Query: 167 ccaccacctccggccgcgtcaccatgtccgccgagtggttccccggccagccccgccccg 226 |||||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||| | Sbjct: 169 ccaccacctctggccgcgtcaccatgtccgcggagtggatgcccggccagccacgccctg 228 Query: 227 cccacctcgacggctcctcgcccggggacttcgggttcgacccgctgggcctcggcaccg 286 ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||| Sbjct: 229 cccacctcgacggctcctctcccggggacttcggcttcgatccgctgggcctcgcgaccg 288 Query: 287 tgccggagaacttcgagcggttcaaggagtccgaggtctaccactgccgttgggccatgc 346 ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 289 tgccggagaacttcgagcggttcaaggagtcagaggtgtaccactgccgctgggccatgc 348 Query: 347 tctgcgtgcctggggtgttggtgccggaggcgctggggctgggcaactgggtgaaggcgc 406 | ||| || ||| | |||||||||| || ||||| |||||||||||||||||||||| Sbjct: 349 ttgccgtccccgggatcctggtgccggaagctctgggcctgggcaactgggtgaaggcgc 408 Query: 407 aggagtgggcggcggtccccggcgggcaggcgacctacttcggcgtcccggtgccgtggg 466 ||||||||||||| ||||||||||||||||| || ||| | |||| |||||||||||||| Sbjct: 409 aggagtgggcggccgtccccggcgggcaggccacgtacctgggcgccccggtgccgtggg 468 Query: 467 gcaacctgccgaccatcctggcgatcgagttcctcgccatcgcgttcgcggagcaccagc 526 ||| |||||||||||||||| |||||||||| | |||||||| ||||| |||||||||| Sbjct: 469 gcacgctgccgaccatcctggtgatcgagttcgtggccatcgccttcgccgagcaccagc 528 Query: 527 gcaccatggagaaggaccccgagaaaaagaagtaccccggcggcgccttcgacccgctcg 586 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 529 gcaccatggagaaggaccccgagaagaagaagtaccccggcggcgccttcgacccgctcg 588 Query: 587 gcttctccaaggaccccgtcaagttggaggagtacaagctcaaggagatcaagaacgggc 646 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct: 589 gcttctccaaggaccccgccaagttcgaggagtacaagctcaaggagatcaagaacggcc 648 Query: 647 ggctggcgatgcttgcgttcgtcgggttctgcgtgcagcagtcggcgtaccccggcaccg 706 | || || ||||| || |||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 649 gcctcgccatgctggccttcgtcggcttctgcgtccagcagtcggcgtaccccggcaccg 708 Query: 707 gcccgctggagaacctggcctcccacctggcggacccgtggcacaacaacatcggcgacg 766 |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 709 gcccgctggagaacctcgcctcccacctcgccgacccgtggcacaacaacatcggcgaca 768 Query: 767 tcgtcatccccagatccatctacccttgagct 798 || ||||||||||||| |||| |||||||||| Sbjct: 769 tcatcatccccagatcaatctccccttgagct 800 >ref|NM_001064048.1| Oryza sativa (japonica cultivar-group) Os06g0320500 (Os06g0320500) mRNA, complete cds Length = 1048 Score = 846 bits (427), Expect = 0.0 Identities = 595/651 (91%) Strand = Plus / Plus Query: 148 ctgccgttctgcgcctacgccaccacctccggccgcgtcaccatgtccgccgagtggttc 207 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct: 166 ctgccggtctgcgcctacgccaccacctccgggcgcgtcaccatgtccgccgagtggatg 225 Query: 208 cccggccagccccgccccgcccacctcgacggctcctcgcccggggacttcgggttcgac 267 || |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 226 ccgggccagccacgccccgcccacctcgacggctcctctcccggtgacttcgggttcgac 285 Query: 268 ccgctgggcctcggcaccgtgccggagaacttcgagcggttcaaggagtccgaggtctac 327 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 286 ccgctgggcctcgccaccgtgccggagaacttcgagcggttcaaggagtcggaggtgtac 345 Query: 328 cactgccgttgggccatgctctgcgtgcctggggtgttggtgccggaggcgctggggctg 387 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 346 cactgccggtgggccatgctcgctgtgcctggggtgttggtgccggaggcgctggggctg 405 Query: 388 ggcaactgggtgaaggcgcaggagtgggcggcggtccccggcgggcaggcgacctacttc 447 |||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||| || Sbjct: 406 ggcaactgggtgcaggcgcaggagtgggcggcggagcccggcggccaggccacgtacctc 465 Query: 448 ggcgtcccggtgccgtggggcaacctgccgaccatcctggcgatcgagttcctcgccatc 507 ||| ||||||||| ||||||| |||||||| ||||||| ||||||||| |||||||| Sbjct: 466 ggcaacccggtgccatggggcacgctgccgacgatcctggtcatcgagttcgtcgccatc 525 Query: 508 gcgttcgcggagcaccagcgcaccatggagaaggaccccgagaaaaagaagtaccccggc 567 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 526 gccttcgccgagcaccagcgcaccatggagaaggaccccgagaagaagaagtaccccggc 585 Query: 568 ggcgccttcgacccgctcggcttctccaaggaccccgtcaagttggaggagtacaagctc 627 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 586 ggcgccttcgaccccctcggcttctccaaggaccccgtcaagttcgaggagtacaagctc 645 Query: 628 aaggagatcaagaacgggcggctggcgatgcttgcgttcgtcgggttctgcgtgcagcag 687 |||||||||||||||||||| |||| ||||| || || || || |||||||| || ||| Sbjct: 646 aaggagatcaagaacgggcgattggccatgctggcttttgtgggtttctgcgtccaacag 705 Query: 688 tcggcgtaccccggcaccggcccgctggagaacctggcctcccacctggcggacccgtgg 747 ||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||| Sbjct: 706 tcggcgtacccgggcaccggcccactggagaacctggccagccacctctcggacccgtgg 765 Query: 748 cacaacaacatcggcgacgtcgtcatccccagatccatctacccttgagct 798 |||||||||||||||||| || ||||||| ||| ||||||||||||||||| Sbjct: 766 cacaacaacatcggcgacatcatcatcccgagaaccatctacccttgagct 816 Score = 107 bits (54), Expect = 9e-20 Identities = 57/58 (98%) Strand = Plus / Plus Query: 71 cgagcgggctgaggagctgcagcgccgtgggcgtgccgagcctgctggcgccgtcgtc 128 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 95 cgagcgggctgaggagctgcagcgcggtgggcgtgccgagcctgctggcgccgtcgtc 152