BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf046i18 (2080 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001060082.1| Oryza sativa (japonica cultivar-group) Os04g... 801 0.0 emb|CR855240.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 278 9e-71 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 278 9e-71 emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 278 9e-71 gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 92 1e-14 >ref|NM_001060082.1| Oryza sativa (japonica cultivar-group) Os04g0560500 (Os04g0560500) mRNA, complete cds Length = 1446 Score = 801 bits (404), Expect = 0.0 Identities = 707/808 (87%) Strand = Plus / Plus Query: 937 aggcataaaattctttgcaaacagagttccaacaagtttgacaataaataaggacactga 996 |||| |||||||| || ||||||||| |||||||||||| | |||||||||||||||| Sbjct: 636 aggcttaaaattccatggaaacagagtgccaacaagtttggccataaataaggacactgc 695 Query: 997 atgcgtctctggaattgtctgtggagaggaggtatatgaggcagatgcatttgttttggc 1056 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 696 atgtatctctggaattgtctgtggagaggaggtacatgaggcagatgcatttgttttggc 755 Query: 1057 tgtgggactctctcctctacaatctgtcattaagaacagtccgtttctgcagtctcaaca 1116 | ||||||||| | ||||||| | |||| ||||||||||||||||| ||||||| || Sbjct: 756 taatggactctcttcgctacaatatatcatcaagaacagtccgtttctacagtctcggca 815 Query: 1117 agaattcaccaatcttcttcatctgtcaacaattgatgtcatctctataaaattatggtt 1176 |||||| ||||||||||||||||| || |||||||| |||||||||| |||||||| Sbjct: 816 agaatttgttaatcttcttcatctgtccacgattgatgtggtctctataaagttatggtt 875 Query: 1177 tgataaaaaggtcacaattcctaaggctgctaacgtctgttctggctttgataattcatc 1236 |||||| ||| |||||||||| |||| ||| || || |||||||| |||||| || |||| Sbjct: 876 tgataagaagatcacaattccaaaggttgccaatgtttgttctggttttgatgatccatc 935 Query: 1237 tggctggatattctttgaccttacctcaatatatgatgattatactgacgaaccaataac 1296 | | |||| ||||||||||||||| |||||||||||||||||| ||||| || ||| ||| Sbjct: 936 taggtggacattctttgaccttacttcaatatatgatgattatgctgacaaatcaacaac 995 Query: 1297 agttgtggaggctgaattttataatgctagccatttgttgccactgaatgatgaacagat 1356 | ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| Sbjct: 996 aattgtggaggctgaattttacaatgctagccatttgctgccactgaatgatgagcagat 1055 Query: 1357 catttctgaagcttcatcacaccttatcaaatacacacaagattttgagggagctactgt 1416 | ||||||| |||||||||||||||||||||| || ||| |||||||||| ||||| || Sbjct: 1056 cgtttctgaggcttcatcacaccttatcaaatgcatacaggattttgaggaggctaccgt 1115 Query: 1417 gatccagcagctagtcagaagatctcctagatctgtaatccactttcttccaggttctta 1476 |||||| || | |||||||||||||||| |||| ||| ||||| |||||||||||||| Sbjct: 1116 gatccaacaattggtcagaagatctcctaaatctacaatgcacttccttccaggttctta 1175 Query: 1477 caagtacacagtacgaggatcaacttcctttccaaatttgtttattgccggtgattggat 1536 |||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| Sbjct: 1176 caagtacacagtgcgaggatcaactaccttaccaaatttgtttattgctggtgattggat 1235 Query: 1537 agtcaaccgacacggatccttttcaaaggaaaaagcatacgttactggacttgaagccgc 1596 ||| |||||||| || ||||||||||||||||| ||||| || |||||||| ||||| || Sbjct: 1236 agtgaaccgacatgggtccttttcaaaggaaaaggcatatgtgactggactcgaagctgc 1295 Query: 1597 taatagggtggtggactattttggcgaaggaaactttgcgaaaataatcgcagttgatgg 1656 ||||||||||||||||||||| || || || |||||||||||||||| |||||||| | Sbjct: 1296 taatagggtggtggactatttgggtgatggcgactttgcgaaaataattgcagttgaaga 1355 Query: 1657 agatgagcctcatatagagacactgcgcaatctcaacagaagagccaatgaattaaggac 1716 ||| |||||||||||||||||| || |||||||| ||||||||||| ||||||| ||| Sbjct: 1356 agacgagcctcatatagagacagcacggaatctcaatagaagagccaacgaattaaagac 1415 Query: 1717 tcagatttgtttctcagagttctttctc 1744 ||||||| |||||| |||||||||||| Sbjct: 1416 tcagattcctttctcggagttctttctc 1443 Score = 618 bits (312), Expect = e-173 Identities = 553/632 (87%), Gaps = 6/632 (0%) Strand = Plus / Plus Query: 116 tggtgtacggctctcgccgccgcgcccgtcgccggaggccggctgcctccgccctccctc 175 |||||| || || ||||| |||||||||||||||| |||||| | ||||||||||| ||| Sbjct: 7 tggtgtgcgcctatcgccaccgcgcccgtcgccggcggccggttccctccgccctctctc 66 Query: 176 cgccgctgccaccgccggagaggaagctccgtccgggcagaggcctccccgg---caggc 232 ||| |||| ||| || |||| || || ||||| || || |||||||||| | | | Sbjct: 67 cgc---tgccgccgtcgtcgagggagatcggtccgcgcggacgcctccccggagcccgtc 123 Query: 233 gagacccggcggaagaaggtcgccgtcgccggcgccggctgggccggcctcgccgccgcg 292 || || | |||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 124 gacacgcagcggaagaaggtcgccgtcgccggggccggctgggcaggcctcgccgccgcg 183 Query: 293 caccacctcgtcaaacagggatacgaggttacgcttctcggagcggagagcggcccaacg 352 || |||||||||||||||||||||||||| |||||||| || || |||||||||||||| Sbjct: 184 catcacctcgtcaaacagggatacgaggtcacgcttctgggggccgagagcggcccaacc 243 Query: 353 gaggaggtcggtctcagggggttttggtatccatatcgcaacattttctctctagtcgat 412 |||||| | |||||||| ||||||||||| ||||| || ||||||||||| | || ||| Sbjct: 244 gaggagattggtctcagagggttttggtacccataccgtaacattttctcgttggtggat 303 Query: 413 gagctggggatctcgcctttcacagggtggactaaagcagcatactattctccacaaggc 472 ||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct: 304 gagctcgggatctcgcctttcacagggtggactaaagctgcatactactcttcacaaggg 363 Query: 473 cttgcagtcgaattccccatttttcatgaccagcccaggttaccagctccctttggaatc 532 |||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 364 cttgcagtggaatttcccatttttcatgaccagccccgattaccagctccctttggaatg 423 Query: 533 tttgcatatccggaattccctggtcttcctttgattgataggttgacatcgattcctgtc 592 || ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 424 ttaacatatccagaattcccaagtcttcctttaattgataggttgacatcgattcctgtc 483 Query: 593 atagctgcagtcattgactttgacaacacagacactgcttggagaaaatatgatacaatg 652 || ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 484 atggctgcagtcattgacttcaacaacacagacactgcttggatgaaatatgatgcaatg 543 Query: 653 actgcaagagatctttttaagatgttcgggtgctcgcaaagactttacaaggaagttttt 712 | |||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||| Sbjct: 544 agtgcaagagatctgtttaagatgttcggctgctctcaaaaactctacaaggaaattttt 603 Query: 713 gaaccagctattcaggctgccctgtttgctcc 744 ||||||| |||||||| |||||||||||||| Sbjct: 604 caaccagcaattcaggccgccctgtttgctcc 635 >emb|CR855240.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0103C08-B0602B01, complete sequence Length = 150079 Score = 278 bits (140), Expect = 9e-71 Identities = 215/240 (89%) Strand = Plus / Plus Query: 856 ggaaaactctgattttttgatgtgccgtggggaagtagaagataaaatattctctccttg 915 ||||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||| Sbjct: 134547 ggaaaactctgattttttgttgtgccgtggggaagtggaagacataattttctctccttg 134606 Query: 916 gttgaaatcactggaactgaaaggcataaaattctttgcaaacagagttccaacaagttt 975 ||||||||||||||||||| ||||| |||||||| || ||||||||| ||||||||||| Sbjct: 134607 gttgaaatcactggaactgcaaggcttaaaattccatggaaacagagtgccaacaagttt 134666 Query: 976 gacaataaataaggacactgaatgcgtctctggaattgtctgtggagaggaggtatatga 1035 | | |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct: 134667 ggccataaataaggacactgcatgtatctctggaattgtctgtggagaggaggtacatga 134726 Query: 1036 ggcagatgcatttgttttggctgtgggactctctcctctacaatctgtcattaagaacag 1095 |||||||||||||||||||||| ||||||||| | ||||||| | |||| |||||||| Sbjct: 134727 ggcagatgcatttgttttggctaatggactctcttcgctacaatatatcatcaagaacag 134786 Score = 184 bits (93), Expect = 1e-42 Identities = 168/193 (87%) Strand = Plus / Plus Query: 1563 aggaaaaagcatacgttactggacttgaagccgctaatagggtggtggactattttggcg 1622 ||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| | Sbjct: 136049 aggaaaaggcatatgtgactggactcgaagctgctaatagggtggtggactattttggtg 136108 Query: 1623 aaggaaactttgcgaaaataatcgcagttgatggagatgagcctcatatagagacactgc 1682 | || |||||||||||||||| |||||||| | ||| |||||||||||||||||| | Sbjct: 136109 atggcgactttgcgaaaataattgcagttgaagaagacgagcctcatatagagacagcac 136168 Query: 1683 gcaatctcaacagaagagccaatgaattaaggactcagatttgtttctcagagttctttc 1742 | |||||||| ||||||||||| ||||||| |||||||||| |||||| |||||||||| Sbjct: 136169 ggaatctcaatagaagagccaacgaattaaagactcagattcctttctcggagttctttc 136228 Query: 1743 tccaatgacataa 1755 || ||| |||||| Sbjct: 136229 tctaatcacataa 136241 Score = 182 bits (92), Expect = 4e-42 Identities = 140/156 (89%) Strand = Plus / Plus Query: 655 tgcaagagatctttttaagatgttcgggtgctcgcaaagactttacaaggaagtttttga 714 |||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||| | Sbjct: 134274 tgcaagagatctgtttaagatgttcggttgctctcaaaaactctacaaggaaatttttca 134333 Query: 715 accagctattcaggctgccctgtttgctccgggtgagcaatgtagtgcagctgctacatt 774 |||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| ||| | Sbjct: 134334 accagcaattcaggtcgccctgtttgctccaggtgagcaatgcagtgcagctgcaacact 134393 Query: 775 ggggatgttgtattattatatgctctcccatcaggt 810 ||||||||||||||| ||||||||||| |||||||| Sbjct: 134394 ggggatgttgtattactatatgctctctcatcaggt 134429 Score = 161 bits (81), Expect = 1e-35 Identities = 199/237 (83%), Gaps = 6/237 (2%) Strand = Plus / Plus Query: 78 ctccgcgattcccgaagctccgcgccgaaggaatgcgttggtgtacggctctcgccgccg 137 |||| ||||||||||| || | ||||||||||||| | |||||| || || ||||| ||| Sbjct: 132640 ctcctcgattcccgaatcttcccgccgaaggaatgtgctggtgtgcgcctatcgccaccg 132699 Query: 138 cgcccgtcgccggaggccggctgcctccgccctccctccgccgctgccaccgccggagag 197 ||||||||||||| |||||| | ||||||||||| |||||| |||| ||| || ||| Sbjct: 132700 cgcccgtcgccggcggccggttccctccgccctctctccgc---tgccgccgtcgtcgag 132756 Query: 198 gaagctccgtccgggcagaggcctccccgg---caggcgagacccggcggaagaaggtcg 254 | || || ||||| || || |||||||||| | | ||| || | |||||||||||||| Sbjct: 132757 ggagatcggtccgcgcggacgcctccccggagcccgtcgacacgcagcggaagaaggtcg 132816 Query: 255 ccgtcgccggcgccggctgggccggcctcgccgccgcgcaccacctcgtcaaacagg 311 |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 132817 ccgtcgccggggccggctgggcaggcctcgccgccgcgcatcacctcgtcaaacagg 132873 Score = 161 bits (81), Expect = 1e-35 Identities = 135/153 (88%) Strand = Plus / Plus Query: 1319 aatgctagccatttgttgccactgaatgatgaacagatcatttctgaagcttcatcacac 1378 ||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||| Sbjct: 135388 aatgctagccatttgctgccactgaatgatgagcagatcgtttctgaggcttcatcacac 135447 Query: 1379 cttatcaaatacacacaagattttgagggagctactgtgatccagcagctagtcagaaga 1438 |||||||||| || ||| |||||||||| |||||||||||||| || | ||||||||| Sbjct: 135448 cttatcaaatgcatacaggattttgaggaggctactgtgatccaacaattggtcagaaga 135507 Query: 1439 tctcctagatctgtaatccactttcttccaggt 1471 ||||||| |||| ||| ||||| ||||||||| Sbjct: 135508 tctcctaaatctacaatgcacttccttccaggt 135540 Score = 133 bits (67), Expect = 3e-27 Identities = 91/99 (91%) Strand = Plus / Plus Query: 1467 caggttcttacaagtacacagtacgaggatcaacttcctttccaaatttgtttattgccg 1526 |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| | Sbjct: 135879 caggttcttacaagtacacagtgcgaggatcaactaccttaacaaatttgtttattgctg 135938 Query: 1527 gtgattggatagtcaaccgacacggatccttttcaaagg 1565 ||||||||||||| |||||||| || ||||||||||||| Sbjct: 135939 gtgattggatagtgaaccgacatgggtccttttcaaagg 135977 Score = 127 bits (64), Expect = 2e-25 Identities = 112/128 (87%) Strand = Plus / Plus Query: 1188 tcacaattcctaaggctgctaacgtctgttctggctttgataattcatctggctggatat 1247 |||||||||| |||| ||| || || |||||||| |||||| || ||||||| |||| || Sbjct: 135167 tcacaattccaaaggttgccaatgtttgttctggttttgatgatccatctgggtggacat 135226 Query: 1248 tctttgaccttacctcaatatatgatgattatactgacgaaccaataacagttgtggagg 1307 ||||||||||||| |||||||||||||||||| ||||| || ||| |||| ||||||||| Sbjct: 135227 tctttgaccttacttcaatatatgatgattatgctgacaaatcaacaacaattgtggagg 135286 Query: 1308 ctgaattt 1315 |||||||| Sbjct: 135287 ctgaattt 135294 Score = 123 bits (62), Expect = 3e-24 Identities = 98/110 (89%) Strand = Plus / Plus Query: 371 gggttttggtatccatatcgcaacattttctctctagtcgatgagctggggatctcgcct 430 ||||||||||| ||||| || ||||||||||| | || |||||||| |||||||||||| Sbjct: 133275 gggttttggtacccataccgtaacattttctcgttggtggatgagctcgggatctcgcct 133334 Query: 431 ttcacagggtggactaaagcagcatactattctccacaaggccttgcagt 480 |||||||||||||||||||| |||||||| ||| ||||||| |||||||| Sbjct: 133335 ttcacagggtggactaaagctgcatactactcttcacaagggcttgcagt 133384 Score = 85.7 bits (43), Expect = 7e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 1094 agtccgtttctgcagtctcaacaagaattcaccaatcttcttcatctgtcaacaattgat 1153 ||||||||||| ||||||| |||||||| ||||||||||||||||| || |||||| Sbjct: 134983 agtccgtttctacagtctcggcaagaatttgttaatcttcttcatctgtccacgattgat 135042 Query: 1154 gtcatctctataaaattatggtttgataaaaaggt 1188 || |||||||||| |||||||||||||| ||||| Sbjct: 135043 gtggtctctataaagttatggtttgataagaaggt 135077 Score = 79.8 bits (40), Expect = 4e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 555 gtcttcctttgattgataggttgacatcgattcctgtcatagctgcag 602 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 133992 gtcttcctttaattgataggttgacatcgattcctgtcatggctgcag 134039 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 278 bits (140), Expect = 9e-71 Identities = 215/240 (89%) Strand = Plus / Plus Query: 856 ggaaaactctgattttttgatgtgccgtggggaagtagaagataaaatattctctccttg 915 ||||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||| Sbjct: 28050812 ggaaaactctgattttttgttgtgccgtggggaagtggaagacataattttctctccttg 28050871 Query: 916 gttgaaatcactggaactgaaaggcataaaattctttgcaaacagagttccaacaagttt 975 ||||||||||||||||||| ||||| |||||||| || ||||||||| ||||||||||| Sbjct: 28050872 gttgaaatcactggaactgcaaggcttaaaattccatggaaacagagtgccaacaagttt 28050931 Query: 976 gacaataaataaggacactgaatgcgtctctggaattgtctgtggagaggaggtatatga 1035 | | |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct: 28050932 ggccataaataaggacactgcatgtatctctggaattgtctgtggagaggaggtacatga 28050991 Query: 1036 ggcagatgcatttgttttggctgtgggactctctcctctacaatctgtcattaagaacag 1095 |||||||||||||||||||||| ||||||||| | ||||||| | |||| |||||||| Sbjct: 28050992 ggcagatgcatttgttttggctaatggactctcttcgctacaatatatcatcaagaacag 28051051 Score = 182 bits (92), Expect = 4e-42 Identities = 140/156 (89%) Strand = Plus / Plus Query: 655 tgcaagagatctttttaagatgttcgggtgctcgcaaagactttacaaggaagtttttga 714 |||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||| | Sbjct: 28050538 tgcaagagatctgtttaagatgttcggctgctctcaaaaactctacaaggaaatttttca 28050597 Query: 715 accagctattcaggctgccctgtttgctccgggtgagcaatgtagtgcagctgctacatt 774 |||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||| | Sbjct: 28050598 accagcaattcaggccgccctgtttgctccaggtgagcaatgcagtgcagctgcaacact 28050657 Query: 775 ggggatgttgtattattatatgctctcccatcaggt 810 |||||||| |||||| ||||||||||| |||||||| Sbjct: 28050658 ggggatgtcgtattactatatgctctctcatcaggt 28050693 Score = 176 bits (89), Expect = 2e-40 Identities = 167/193 (86%) Strand = Plus / Plus Query: 1563 aggaaaaagcatacgttactggacttgaagccgctaatagggtggtggactattttggcg 1622 ||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| || | Sbjct: 28052314 aggaaaaggcatatgtgactggactcgaagctgctaatagggtggtggactatttgggtg 28052373 Query: 1623 aaggaaactttgcgaaaataatcgcagttgatggagatgagcctcatatagagacactgc 1682 | || |||||||||||||||| |||||||| | ||| |||||||||||||||||| | Sbjct: 28052374 atggcgactttgcgaaaataattgcagttgaagaagacgagcctcatatagagacagcac 28052433 Query: 1683 gcaatctcaacagaagagccaatgaattaaggactcagatttgtttctcagagttctttc 1742 | |||||||| ||||||||||| ||||||| |||||||||| |||||| |||||||||| Sbjct: 28052434 ggaatctcaatagaagagccaacgaattaaagactcagattcctttctcggagttctttc 28052493 Query: 1743 tccaatgacataa 1755 || ||| |||||| Sbjct: 28052494 tctaatcacataa 28052506 Score = 161 bits (81), Expect = 1e-35 Identities = 199/237 (83%), Gaps = 6/237 (2%) Strand = Plus / Plus Query: 78 ctccgcgattcccgaagctccgcgccgaaggaatgcgttggtgtacggctctcgccgccg 137 |||| ||||||||||| || | ||||||||||||| | |||||| || || ||||| ||| Sbjct: 28048904 ctcctcgattcccgaatcttcccgccgaaggaatgtgctggtgtgcgcctatcgccaccg 28048963 Query: 138 cgcccgtcgccggaggccggctgcctccgccctccctccgccgctgccaccgccggagag 197 ||||||||||||| |||||| | ||||||||||| |||||| |||| ||| || ||| Sbjct: 28048964 cgcccgtcgccggcggccggttccctccgccctctctccgc---tgccgccgtcgtcgag 28049020 Query: 198 gaagctccgtccgggcagaggcctccccgg---caggcgagacccggcggaagaaggtcg 254 | || || ||||| || || |||||||||| | | ||| || | |||||||||||||| Sbjct: 28049021 ggagatcggtccgcgcggacgcctccccggagcccgtcgacacgcagcggaagaaggtcg 28049080 Query: 255 ccgtcgccggcgccggctgggccggcctcgccgccgcgcaccacctcgtcaaacagg 311 |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 28049081 ccgtcgccggggccggctgggcaggcctcgccgccgcgcatcacctcgtcaaacagg 28049137 Score = 153 bits (77), Expect = 3e-33 Identities = 134/153 (87%) Strand = Plus / Plus Query: 1319 aatgctagccatttgttgccactgaatgatgaacagatcatttctgaagcttcatcacac 1378 ||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||| Sbjct: 28051653 aatgctagccatttgctgccactgaatgatgagcagatcgtttctgaggcttcatcacac 28051712 Query: 1379 cttatcaaatacacacaagattttgagggagctactgtgatccagcagctagtcagaaga 1438 |||||||||| || ||| |||||||||| ||||| |||||||| || | ||||||||| Sbjct: 28051713 cttatcaaatgcatacaggattttgaggaggctaccgtgatccaacaattggtcagaaga 28051772 Query: 1439 tctcctagatctgtaatccactttcttccaggt 1471 ||||||| |||| ||| ||||| ||||||||| Sbjct: 28051773 tctcctaaatctacaatgcacttccttccaggt 28051805 Score = 141 bits (71), Expect = 1e-29 Identities = 92/99 (92%) Strand = Plus / Plus Query: 1467 caggttcttacaagtacacagtacgaggatcaacttcctttccaaatttgtttattgccg 1526 |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| | Sbjct: 28052144 caggttcttacaagtacacagtgcgaggatcaactaccttaccaaatttgtttattgctg 28052203 Query: 1527 gtgattggatagtcaaccgacacggatccttttcaaagg 1565 ||||||||||||| |||||||| || ||||||||||||| Sbjct: 28052204 gtgattggatagtgaaccgacatgggtccttttcaaagg 28052242 Score = 123 bits (62), Expect = 3e-24 Identities = 98/110 (89%) Strand = Plus / Plus Query: 371 gggttttggtatccatatcgcaacattttctctctagtcgatgagctggggatctcgcct 430 ||||||||||| ||||| || ||||||||||| | || |||||||| |||||||||||| Sbjct: 28049539 gggttttggtacccataccgtaacattttctcgttggtggatgagctcgggatctcgcct 28049598 Query: 431 ttcacagggtggactaaagcagcatactattctccacaaggccttgcagt 480 |||||||||||||||||||| |||||||| ||| ||||||| |||||||| Sbjct: 28049599 ttcacagggtggactaaagctgcatactactcttcacaagggcttgcagt 28049648 Score = 119 bits (60), Expect = 5e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 1188 tcacaattcctaaggctgctaacgtctgttctggctttgataattcatctggctggatat 1247 |||||||||| |||| ||| || || |||||||| |||||| || ||||| | |||| || Sbjct: 28051432 tcacaattccaaaggttgccaatgtttgttctggttttgatgatccatctaggtggacat 28051491 Query: 1248 tctttgaccttacctcaatatatgatgattatactgacgaaccaataacagttgtggagg 1307 ||||||||||||| |||||||||||||||||| ||||| || ||| |||| ||||||||| Sbjct: 28051492 tctttgaccttacttcaatatatgatgattatgctgacaaatcaacaacaattgtggagg 28051551 Query: 1308 ctgaattt 1315 |||||||| Sbjct: 28051552 ctgaattt 28051559 Score = 85.7 bits (43), Expect = 7e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 1094 agtccgtttctgcagtctcaacaagaattcaccaatcttcttcatctgtcaacaattgat 1153 ||||||||||| ||||||| |||||||| ||||||||||||||||| || |||||| Sbjct: 28051248 agtccgtttctacagtctcggcaagaatttgttaatcttcttcatctgtccacgattgat 28051307 Query: 1154 gtcatctctataaaattatggtttgataaaaaggt 1188 || |||||||||| |||||||||||||| ||||| Sbjct: 28051308 gtggtctctataaagttatggtttgataagaaggt 28051342 Score = 79.8 bits (40), Expect = 4e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 555 gtcttcctttgattgataggttgacatcgattcctgtcatagctgcag 602 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 28050256 gtcttcctttaattgataggttgacatcgattcctgtcatggctgcag 28050303 >emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 278 bits (140), Expect = 9e-71 Identities = 215/240 (89%) Strand = Plus / Plus Query: 856 ggaaaactctgattttttgatgtgccgtggggaagtagaagataaaatattctctccttg 915 ||||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||| Sbjct: 58038 ggaaaactctgattttttgttgtgccgtggggaagtggaagacataattttctctccttg 58097 Query: 916 gttgaaatcactggaactgaaaggcataaaattctttgcaaacagagttccaacaagttt 975 ||||||||||||||||||| ||||| |||||||| || ||||||||| ||||||||||| Sbjct: 58098 gttgaaatcactggaactgcaaggcttaaaattccatggaaacagagtgccaacaagttt 58157 Query: 976 gacaataaataaggacactgaatgcgtctctggaattgtctgtggagaggaggtatatga 1035 | | |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct: 58158 ggccataaataaggacactgcatgtatctctggaattgtctgtggagaggaggtacatga 58217 Query: 1036 ggcagatgcatttgttttggctgtgggactctctcctctacaatctgtcattaagaacag 1095 |||||||||||||||||||||| ||||||||| | ||||||| | |||| |||||||| Sbjct: 58218 ggcagatgcatttgttttggctaatggactctcttcgctacaatatatcatcaagaacag 58277 Score = 182 bits (92), Expect = 4e-42 Identities = 140/156 (89%) Strand = Plus / Plus Query: 655 tgcaagagatctttttaagatgttcgggtgctcgcaaagactttacaaggaagtttttga 714 |||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||| | Sbjct: 57764 tgcaagagatctgtttaagatgttcggctgctctcaaaaactctacaaggaaatttttca 57823 Query: 715 accagctattcaggctgccctgtttgctccgggtgagcaatgtagtgcagctgctacatt 774 |||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||| | Sbjct: 57824 accagcaattcaggccgccctgtttgctccaggtgagcaatgcagtgcagctgcaacact 57883 Query: 775 ggggatgttgtattattatatgctctcccatcaggt 810 |||||||| |||||| ||||||||||| |||||||| Sbjct: 57884 ggggatgtcgtattactatatgctctctcatcaggt 57919 Score = 176 bits (89), Expect = 2e-40 Identities = 167/193 (86%) Strand = Plus / Plus Query: 1563 aggaaaaagcatacgttactggacttgaagccgctaatagggtggtggactattttggcg 1622 ||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| || | Sbjct: 59540 aggaaaaggcatatgtgactggactcgaagctgctaatagggtggtggactatttgggtg 59599 Query: 1623 aaggaaactttgcgaaaataatcgcagttgatggagatgagcctcatatagagacactgc 1682 | || |||||||||||||||| |||||||| | ||| |||||||||||||||||| | Sbjct: 59600 atggcgactttgcgaaaataattgcagttgaagaagacgagcctcatatagagacagcac 59659 Query: 1683 gcaatctcaacagaagagccaatgaattaaggactcagatttgtttctcagagttctttc 1742 | |||||||| ||||||||||| ||||||| |||||||||| |||||| |||||||||| Sbjct: 59660 ggaatctcaatagaagagccaacgaattaaagactcagattcctttctcggagttctttc 59719 Query: 1743 tccaatgacataa 1755 || ||| |||||| Sbjct: 59720 tctaatcacataa 59732 Score = 161 bits (81), Expect = 1e-35 Identities = 199/237 (83%), Gaps = 6/237 (2%) Strand = Plus / Plus Query: 78 ctccgcgattcccgaagctccgcgccgaaggaatgcgttggtgtacggctctcgccgccg 137 |||| ||||||||||| || | ||||||||||||| | |||||| || || ||||| ||| Sbjct: 56130 ctcctcgattcccgaatcttcccgccgaaggaatgtgctggtgtgcgcctatcgccaccg 56189 Query: 138 cgcccgtcgccggaggccggctgcctccgccctccctccgccgctgccaccgccggagag 197 ||||||||||||| |||||| | ||||||||||| |||||| |||| ||| || ||| Sbjct: 56190 cgcccgtcgccggcggccggttccctccgccctctctccgc---tgccgccgtcgtcgag 56246 Query: 198 gaagctccgtccgggcagaggcctccccgg---caggcgagacccggcggaagaaggtcg 254 | || || ||||| || || |||||||||| | | ||| || | |||||||||||||| Sbjct: 56247 ggagatcggtccgcgcggacgcctccccggagcccgtcgacacgcagcggaagaaggtcg 56306 Query: 255 ccgtcgccggcgccggctgggccggcctcgccgccgcgcaccacctcgtcaaacagg 311 |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 56307 ccgtcgccggggccggctgggcaggcctcgccgccgcgcatcacctcgtcaaacagg 56363 Score = 153 bits (77), Expect = 3e-33 Identities = 134/153 (87%) Strand = Plus / Plus Query: 1319 aatgctagccatttgttgccactgaatgatgaacagatcatttctgaagcttcatcacac 1378 ||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||| Sbjct: 58879 aatgctagccatttgctgccactgaatgatgagcagatcgtttctgaggcttcatcacac 58938 Query: 1379 cttatcaaatacacacaagattttgagggagctactgtgatccagcagctagtcagaaga 1438 |||||||||| || ||| |||||||||| ||||| |||||||| || | ||||||||| Sbjct: 58939 cttatcaaatgcatacaggattttgaggaggctaccgtgatccaacaattggtcagaaga 58998 Query: 1439 tctcctagatctgtaatccactttcttccaggt 1471 ||||||| |||| ||| ||||| ||||||||| Sbjct: 58999 tctcctaaatctacaatgcacttccttccaggt 59031 Score = 141 bits (71), Expect = 1e-29 Identities = 92/99 (92%) Strand = Plus / Plus Query: 1467 caggttcttacaagtacacagtacgaggatcaacttcctttccaaatttgtttattgccg 1526 |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| | Sbjct: 59370 caggttcttacaagtacacagtgcgaggatcaactaccttaccaaatttgtttattgctg 59429 Query: 1527 gtgattggatagtcaaccgacacggatccttttcaaagg 1565 ||||||||||||| |||||||| || ||||||||||||| Sbjct: 59430 gtgattggatagtgaaccgacatgggtccttttcaaagg 59468 Score = 123 bits (62), Expect = 3e-24 Identities = 98/110 (89%) Strand = Plus / Plus Query: 371 gggttttggtatccatatcgcaacattttctctctagtcgatgagctggggatctcgcct 430 ||||||||||| ||||| || ||||||||||| | || |||||||| |||||||||||| Sbjct: 56765 gggttttggtacccataccgtaacattttctcgttggtggatgagctcgggatctcgcct 56824 Query: 431 ttcacagggtggactaaagcagcatactattctccacaaggccttgcagt 480 |||||||||||||||||||| |||||||| ||| ||||||| |||||||| Sbjct: 56825 ttcacagggtggactaaagctgcatactactcttcacaagggcttgcagt 56874 Score = 119 bits (60), Expect = 5e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 1188 tcacaattcctaaggctgctaacgtctgttctggctttgataattcatctggctggatat 1247 |||||||||| |||| ||| || || |||||||| |||||| || ||||| | |||| || Sbjct: 58658 tcacaattccaaaggttgccaatgtttgttctggttttgatgatccatctaggtggacat 58717 Query: 1248 tctttgaccttacctcaatatatgatgattatactgacgaaccaataacagttgtggagg 1307 ||||||||||||| |||||||||||||||||| ||||| || ||| |||| ||||||||| Sbjct: 58718 tctttgaccttacttcaatatatgatgattatgctgacaaatcaacaacaattgtggagg 58777 Query: 1308 ctgaattt 1315 |||||||| Sbjct: 58778 ctgaattt 58785 Score = 85.7 bits (43), Expect = 7e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 1094 agtccgtttctgcagtctcaacaagaattcaccaatcttcttcatctgtcaacaattgat 1153 ||||||||||| ||||||| |||||||| ||||||||||||||||| || |||||| Sbjct: 58474 agtccgtttctacagtctcggcaagaatttgttaatcttcttcatctgtccacgattgat 58533 Query: 1154 gtcatctctataaaattatggtttgataaaaaggt 1188 || |||||||||| |||||||||||||| ||||| Sbjct: 58534 gtggtctctataaagttatggtttgataagaaggt 58568 Score = 79.8 bits (40), Expect = 4e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 555 gtcttcctttgattgataggttgacatcgattcctgtcatagctgcag 602 |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 57482 gtcttcctttaattgataggttgacatcgattcctgtcatggctgcag 57529 >gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 91.7 bits (46), Expect = 1e-14 Identities = 61/66 (92%) Strand = Plus / Plus Query: 2015 ctgaagatgtatgaatatttacctgcccagaaaggcggggatccacataaaagaatatac 2074 ||||||||||||||||| |||||| ||||||||||| | || |||||||||||||||||| Sbjct: 118040 ctgaagatgtatgaatacttacctacccagaaaggcagtgaaccacataaaagaatatac 118099 Query: 2075 aagatc 2080 |||||| Sbjct: 118100 aagatc 118105