BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf044h04 (1354 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 478 e-131 dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 478 e-131 gb|EF555543.1| Oryza sativa (indica cultivar-group) hox20 (hox20... 472 e-129 emb|CT829446.1| Oryza sativa (indica cultivar-group) cDNA clone:... 472 e-129 ref|NM_001068599.1| Oryza sativa (japonica cultivar-group) Os08g... 472 e-129 >dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 478 bits (241), Expect = e-131 Identities = 301/321 (93%) Strand = Plus / Minus Query: 435 gtggacgaggacatgctgatgtgcggcggaggaggcggcggcatgggggagaagaagcgg 494 ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| Sbjct: 23797560 gtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcgg 23797501 Query: 495 cggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 554 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23797500 cggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 23797441 Query: 555 gagccggagcggaaggcgcggctggcgcgggacctcggcctgcagccgcgccaggtcgcc 614 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 23797440 gagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgcc 23797381 Query: 615 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacacc 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 23797380 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgcc 23797321 Query: 675 gccctccgccactctttcgacgcgctctgcgccgaccacgacgccctccgccgagacaag 734 || |||||||| || | |||||||||| |||||||||||||||| || ||||| |||||| Sbjct: 23797320 gcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaag 23797261 Query: 735 gacgccctcctcgccgaggta 755 ||||||||||||||||||||| Sbjct: 23797260 gacgccctcctcgccgaggta 23797240 Score = 178 bits (90), Expect = 4e-41 Identities = 151/171 (88%), Gaps = 9/171 (5%) Strand = Plus / Minus Query: 847 gcagatcaaggacctgaaggcgaagctcggggacgaggacgctgcggcgagcttctcgtc 906 |||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 23797175 gcagatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtc 23797116 Query: 907 ggtgaaggaggag------ccggcggcgtccgacgtcgagcccccgg---ccgcggcggc 957 ||||||||||||| |||||||||||||||| ||| ||||||| ||| ||| | Sbjct: 23797115 ggtgaaggaggaggaggacccggcggcgtccgacgccgaccccccggccaccggcgcgcc 23797056 Query: 958 gcaaggctcgtccgacagcgactcgagcgcggtgctgaacgacgcggagat 1008 ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 23797055 gcagggctcgtccgagagcgactcgagcgcggtgctgaacgacgcggagat 23797005 Score = 174 bits (88), Expect = 6e-40 Identities = 163/188 (86%) Strand = Plus / Minus Query: 482 ggagaagaagcggcggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagac 541 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct: 19880303 ggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgagga 19880244 Query: 542 ggagaacaagctggagccggagcggaaggcgcggctggcgcgggacctcggcctgcagcc 601 |||||||||||||||||||||||||||| || ||| || || ||||||| || || Sbjct: 19880243 ggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggcccc 19880184 Query: 602 gcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcga 661 || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 19880183 ccggcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcga 19880124 Query: 662 gcgcgact 669 || ||||| Sbjct: 19880123 gcacgact 19880116 Score = 125 bits (63), Expect = 5e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 1078 ccacggcgaggtgttcttccacgggcaacagctgctgaaggtggaggacgacgaggccgc 1137 ||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||| || Sbjct: 23796914 ccacgccgaggtgttcttccacgggca---gcttctcaaggtggacgacgacgaggcggc 23796858 Query: 1138 gttcctcggcgacgaagactcggcgtgcgggggcttcttcgccgacgagcagccgccatc 1197 |||||| |||||||| | | |||||||||| |||||||||||||||||||| | || || Sbjct: 23796857 gttcctaggcgacgacggcgcggcgtgcggcggcttcttcgccgacgagcatctcccgtc 23796798 Query: 1198 gctgccgtggtgg 1210 ||||||||||||| Sbjct: 23796797 gctgccgtggtgg 23796785 >dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 478 bits (241), Expect = e-131 Identities = 301/321 (93%) Strand = Plus / Minus Query: 435 gtggacgaggacatgctgatgtgcggcggaggaggcggcggcatgggggagaagaagcgg 494 ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| Sbjct: 86760 gtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcgg 86701 Query: 495 cggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 554 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86700 cggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 86641 Query: 555 gagccggagcggaaggcgcggctggcgcgggacctcggcctgcagccgcgccaggtcgcc 614 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 86640 gagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgcc 86581 Query: 615 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacacc 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 86580 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgcc 86521 Query: 675 gccctccgccactctttcgacgcgctctgcgccgaccacgacgccctccgccgagacaag 734 || |||||||| || | |||||||||| |||||||||||||||| || ||||| |||||| Sbjct: 86520 gcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaag 86461 Query: 735 gacgccctcctcgccgaggta 755 ||||||||||||||||||||| Sbjct: 86460 gacgccctcctcgccgaggta 86440 Score = 178 bits (90), Expect = 4e-41 Identities = 151/171 (88%), Gaps = 9/171 (5%) Strand = Plus / Minus Query: 847 gcagatcaaggacctgaaggcgaagctcggggacgaggacgctgcggcgagcttctcgtc 906 |||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct: 86375 gcagatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtc 86316 Query: 907 ggtgaaggaggag------ccggcggcgtccgacgtcgagcccccgg---ccgcggcggc 957 ||||||||||||| |||||||||||||||| ||| ||||||| ||| ||| | Sbjct: 86315 ggtgaaggaggaggaggacccggcggcgtccgacgccgaccccccggccaccggcgcgcc 86256 Query: 958 gcaaggctcgtccgacagcgactcgagcgcggtgctgaacgacgcggagat 1008 ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 86255 gcagggctcgtccgagagcgactcgagcgcggtgctgaacgacgcggagat 86205 Score = 125 bits (63), Expect = 5e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 1078 ccacggcgaggtgttcttccacgggcaacagctgctgaaggtggaggacgacgaggccgc 1137 ||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||| || Sbjct: 86114 ccacgccgaggtgttcttccacgggca---gcttctcaaggtggacgacgacgaggcggc 86058 Query: 1138 gttcctcggcgacgaagactcggcgtgcgggggcttcttcgccgacgagcagccgccatc 1197 |||||| |||||||| | | |||||||||| |||||||||||||||||||| | || || Sbjct: 86057 gttcctaggcgacgacggcgcggcgtgcggcggcttcttcgccgacgagcatctcccgtc 85998 Query: 1198 gctgccgtggtgg 1210 ||||||||||||| Sbjct: 85997 gctgccgtggtgg 85985 >gb|EF555543.1| Oryza sativa (indica cultivar-group) hox20 (hox20) mRNA, partial cds Length = 456 Score = 472 bits (238), Expect = e-129 Identities = 298/318 (93%) Strand = Plus / Plus Query: 435 gtggacgaggacatgctgatgtgcggcggaggaggcggcggcatgggggagaagaagcgg 494 ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| Sbjct: 64 gtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcgg 123 Query: 495 cggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 554 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 cggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 183 Query: 555 gagccggagcggaaggcgcggctggcgcgggacctcggcctgcagccgcgccaggtcgcc 614 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 184 gagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgcc 243 Query: 615 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacacc 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 244 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgcc 303 Query: 675 gccctccgccactctttcgacgcgctctgcgccgaccacgacgccctccgccgagacaag 734 || |||||||| || | |||||||||| |||||||||||||||| || ||||| |||||| Sbjct: 304 gcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaag 363 Query: 735 gacgccctcctcgccgag 752 |||||||||||||||||| Sbjct: 364 gacgccctcctcgccgag 381 Score = 109 bits (55), Expect = 3e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 849 agatcaaggacctgaaggcgaagctcggggacgaggacgctgcggcgagcttctcgtcgg 908 |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 380 agatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtcgg 439 Query: 909 tgaaggaggag 919 ||||||||||| Sbjct: 440 tgaaggaggag 450 >emb|CT829446.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence Length = 1409 Score = 472 bits (238), Expect = e-129 Identities = 298/318 (93%) Strand = Plus / Plus Query: 435 gtggacgaggacatgctgatgtgcggcggaggaggcggcggcatgggggagaagaagcgg 494 ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| Sbjct: 570 gtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcgg 629 Query: 495 cggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 554 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 630 cggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 689 Query: 555 gagccggagcggaaggcgcggctggcgcgggacctcggcctgcagccgcgccaggtcgcc 614 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 690 gagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgcc 749 Query: 615 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacacc 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 750 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgcc 809 Query: 675 gccctccgccactctttcgacgcgctctgcgccgaccacgacgccctccgccgagacaag 734 || |||||||| || | |||||||||| |||||||||||||||| || ||||| |||||| Sbjct: 810 gcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaag 869 Query: 735 gacgccctcctcgccgag 752 |||||||||||||||||| Sbjct: 870 gacgccctcctcgccgag 887 Score = 174 bits (88), Expect = 6e-40 Identities = 149/169 (88%), Gaps = 9/169 (5%) Strand = Plus / Plus Query: 849 agatcaaggacctgaaggcgaagctcggggacgaggacgctgcggcgagcttctcgtcgg 908 |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 886 agatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtcgg 945 Query: 909 tgaaggaggag------ccggcggcgtccgacgtcgagcccccgg---ccgcggcggcgc 959 ||||||||||| |||||||||||||||| ||| ||||||| ||| ||| ||| Sbjct: 946 tgaaggaggaggaggacccggcggcgtccgacgccgaccccccggccaccggcgcgccgc 1005 Query: 960 aaggctcgtccgacagcgactcgagcgcggtgctgaacgacgcggagat 1008 | ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1006 agggctcgtccgagagcgactcgagcgcggtgctgaacgacgcggagat 1054 Score = 125 bits (63), Expect = 5e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 1078 ccacggcgaggtgttcttccacgggcaacagctgctgaaggtggaggacgacgaggccgc 1137 ||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||| || Sbjct: 1145 ccacgccgaggtgttcttccacgggca---gcttctcaaggtggacgacgacgaggcggc 1201 Query: 1138 gttcctcggcgacgaagactcggcgtgcgggggcttcttcgccgacgagcagccgccatc 1197 |||||| |||||||| | | |||||||||| |||||||||||||||||||| | || || Sbjct: 1202 gttcctaggcgacgacggcgcggcgtgcggcggcttcttcgccgacgagcatctcccgtc 1261 Query: 1198 gctgccgtggtgg 1210 ||||||||||||| Sbjct: 1262 gctgccgtggtgg 1274 >ref|NM_001068599.1| Oryza sativa (japonica cultivar-group) Os08g0481400 (Os08g0481400) mRNA, complete cds Length = 1864 Score = 472 bits (238), Expect = e-129 Identities = 298/318 (93%) Strand = Plus / Plus Query: 435 gtggacgaggacatgctgatgtgcggcggaggaggcggcggcatgggggagaagaagcgg 494 ||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| Sbjct: 569 gtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcgg 628 Query: 495 cggctgagcgcggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 554 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 cggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctg 688 Query: 555 gagccggagcggaaggcgcggctggcgcgggacctcggcctgcagccgcgccaggtcgcc 614 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 689 gagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgcc 748 Query: 615 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacacc 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 749 gtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgcc 808 Query: 675 gccctccgccactctttcgacgcgctctgcgccgaccacgacgccctccgccgagacaag 734 || |||||||| || | |||||||||| |||||||||||||||| || ||||| |||||| Sbjct: 809 gcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaag 868 Query: 735 gacgccctcctcgccgag 752 |||||||||||||||||| Sbjct: 869 gacgccctcctcgccgag 886 Score = 174 bits (88), Expect = 6e-40 Identities = 149/169 (88%), Gaps = 9/169 (5%) Strand = Plus / Plus Query: 849 agatcaaggacctgaaggcgaagctcggggacgaggacgctgcggcgagcttctcgtcgg 908 |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 885 agatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtcgg 944 Query: 909 tgaaggaggag------ccggcggcgtccgacgtcgagcccccgg---ccgcggcggcgc 959 ||||||||||| |||||||||||||||| ||| ||||||| ||| ||| ||| Sbjct: 945 tgaaggaggaggaggacccggcggcgtccgacgccgaccccccggccaccggcgcgccgc 1004 Query: 960 aaggctcgtccgacagcgactcgagcgcggtgctgaacgacgcggagat 1008 | ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1005 agggctcgtccgagagcgactcgagcgcggtgctgaacgacgcggagat 1053 Score = 125 bits (63), Expect = 5e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 1078 ccacggcgaggtgttcttccacgggcaacagctgctgaaggtggaggacgacgaggccgc 1137 ||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||| || Sbjct: 1144 ccacgccgaggtgttcttccacgggca---gcttctcaaggtggacgacgacgaggcggc 1200 Query: 1138 gttcctcggcgacgaagactcggcgtgcgggggcttcttcgccgacgagcagccgccatc 1197 |||||| |||||||| | | |||||||||| |||||||||||||||||||| | || || Sbjct: 1201 gttcctaggcgacgacggcgcggcgtgcggcggcttcttcgccgacgagcatctcccgtc 1260 Query: 1198 gctgccgtggtgg 1210 ||||||||||||| Sbjct: 1261 gctgccgtggtgg 1273