BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf039j09 (1492 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001057596.1| Oryza sativa (japonica cultivar-group) Os03g... 281 4e-72 dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 4e-72 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 178 4e-41 gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 178 4e-41 gb|AY023093.1| Oryza sativa microsatellite MRG5418 containing (G... 115 5e-22 >ref|NM_001057596.1| Oryza sativa (japonica cultivar-group) Os03g0712100 (Os03g0712100) mRNA, complete cds Length = 1366 Score = 281 bits (142), Expect = 4e-72 Identities = 193/210 (91%) Strand = Plus / Plus Query: 927 atggaagaggccaggaagaacaagaattggatgtgccctcactgcattgaggagaagggt 986 ||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 763 atggatgaggtcaggaagaacaagaactggatgtgccctcactgtattgaggagaagggt 822 Query: 987 atcaagaaattctggatatgcaacagctccatctgcttgaagaagaggaagatagcacca 1046 | |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| Sbjct: 823 accaagaaattctggatatgtaacagctccatctgcttgaagaagaggaagttatcacca 882 Query: 1047 actgggattgccatatatgacgcacgcgcgcaagggtacgcgtcggttgcgcaccttctc 1106 ||||| ||||||||||| ||||| || | |||||| |||| ||| ||||||||||||||| Sbjct: 883 actggaattgccatatacgacgcgcgggagcaaggttacgagtctgttgcgcaccttctc 942 Query: 1107 atggacaggctgaagtgccgagcattctga 1136 ||||||| |||||||||||||||||||||| Sbjct: 943 atggacaagctgaagtgccgagcattctga 972 Score = 248 bits (125), Expect = 6e-62 Identities = 187/207 (90%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 452 gaggatgaggaggaggaagaggagcgagaa---aagaaggcggtgttggtgatcgacaag 508 ||||| ||||||||||| ||||||| |||| ||||||||| || |||||||||||||| Sbjct: 457 gaggaggaggaggaggaggaggagcaagaagagaagaaggcgatggtggtgatcgacaag 516 Query: 509 gagagggtgcggatactgcaggagaggcggtgcgatagcaaggggagagggggcgtgtac 568 |||||||||||||| ||||||||| || |||| || ||||||||||| || | ||||||| Sbjct: 517 gagagggtgcggatcctgcaggagcggaggtgtgacagcaaggggaggggcgccgtgtac 576 Query: 569 gaccctgttcttgggatttgctgccatttctgcaggcagaagaaattgtgcggggaggag 628 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 577 gaccctgttcttgggatttgctgccatttctgcaggcagaagaaattgtgcggcgaggag 636 Query: 629 gactgcaagcactgcggcgaaggagac 655 | |||||||| |||||| ||||||||| Sbjct: 637 ggctgcaagcgctgcggggaaggagac 663 Score = 188 bits (95), Expect = 4e-44 Identities = 134/147 (91%) Strand = Plus / Plus Query: 73 cgccgccgccgccatgggaagtctcggcgacaagtccgactacgagagcatccgcgacgc 132 ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||| Sbjct: 66 cgccgccaccgccatggggagtctcggcggcaagtccgactacgagagcgtccgcgacgc 125 Query: 133 acgcatctcggagaacatggtccggatggagatgctcggcctgcgccgctgcgccgggga 192 |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 126 ccgcatctccgagaacctggcacggatggagatgctcggcctgcgccgctgcgccgggga 185 Query: 193 gctaagcgccattgcctccgcctccgc 219 | | || ||||| |||||||||||||| Sbjct: 186 gttcagtgccatcgcctccgcctccgc 212 Score = 87.7 bits (44), Expect = 1e-13 Identities = 65/72 (90%) Strand = Plus / Plus Query: 759 agggaagacggagtgctcctcttgccattcgtcgaatgggatactctgccgtgcttgcct 818 |||||||||||| ||||||||||||||||| || |||| ||||| |||||||||||||| Sbjct: 681 agggaagacggattgctcctcttgccattcttcttatggaatactgtgccgtgcttgcct 740 Query: 819 gaaagtcaggta 830 |||||| ||||| Sbjct: 741 gaaagtgaggta 752 >dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F02, full insert sequence Length = 1367 Score = 281 bits (142), Expect = 4e-72 Identities = 193/210 (91%) Strand = Plus / Plus Query: 927 atggaagaggccaggaagaacaagaattggatgtgccctcactgcattgaggagaagggt 986 ||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 764 atggatgaggtcaggaagaacaagaactggatgtgccctcactgtattgaggagaagggt 823 Query: 987 atcaagaaattctggatatgcaacagctccatctgcttgaagaagaggaagatagcacca 1046 | |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| Sbjct: 824 accaagaaattctggatatgtaacagctccatctgcttgaagaagaggaagttatcacca 883 Query: 1047 actgggattgccatatatgacgcacgcgcgcaagggtacgcgtcggttgcgcaccttctc 1106 ||||| ||||||||||| ||||| || | |||||| |||| ||| ||||||||||||||| Sbjct: 884 actggaattgccatatacgacgcgcgggagcaaggttacgagtctgttgcgcaccttctc 943 Query: 1107 atggacaggctgaagtgccgagcattctga 1136 ||||||| |||||||||||||||||||||| Sbjct: 944 atggacaagctgaagtgccgagcattctga 973 Score = 248 bits (125), Expect = 6e-62 Identities = 187/207 (90%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 452 gaggatgaggaggaggaagaggagcgagaa---aagaaggcggtgttggtgatcgacaag 508 ||||| ||||||||||| ||||||| |||| ||||||||| || |||||||||||||| Sbjct: 458 gaggaggaggaggaggaggaggagcaagaagagaagaaggcgatggtggtgatcgacaag 517 Query: 509 gagagggtgcggatactgcaggagaggcggtgcgatagcaaggggagagggggcgtgtac 568 |||||||||||||| ||||||||| || |||| || ||||||||||| || | ||||||| Sbjct: 518 gagagggtgcggatcctgcaggagcggaggtgtgacagcaaggggaggggcgccgtgtac 577 Query: 569 gaccctgttcttgggatttgctgccatttctgcaggcagaagaaattgtgcggggaggag 628 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 578 gaccctgttcttgggatttgctgccatttctgcaggcagaagaaattgtgcggcgaggag 637 Query: 629 gactgcaagcactgcggcgaaggagac 655 | |||||||| |||||| ||||||||| Sbjct: 638 ggctgcaagcgctgcggggaaggagac 664 Score = 188 bits (95), Expect = 4e-44 Identities = 134/147 (91%) Strand = Plus / Plus Query: 73 cgccgccgccgccatgggaagtctcggcgacaagtccgactacgagagcatccgcgacgc 132 ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||| Sbjct: 67 cgccgccaccgccatggggagtctcggcggcaagtccgactacgagagcgtccgcgacgc 126 Query: 133 acgcatctcggagaacatggtccggatggagatgctcggcctgcgccgctgcgccgggga 192 |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 127 ccgcatctccgagaacctggcacggatggagatgctcggcctgcgccgctgcgccgggga 186 Query: 193 gctaagcgccattgcctccgcctccgc 219 | | || ||||| |||||||||||||| Sbjct: 187 gttcagtgccatcgcctccgcctccgc 213 Score = 87.7 bits (44), Expect = 1e-13 Identities = 65/72 (90%) Strand = Plus / Plus Query: 759 agggaagacggagtgctcctcttgccattcgtcgaatgggatactctgccgtgcttgcct 818 |||||||||||| ||||||||||||||||| || |||| ||||| |||||||||||||| Sbjct: 682 agggaagacggattgctcctcttgccattcttcttatggaatactgtgccgtgcttgcct 741 Query: 819 gaaagtcaggta 830 |||||| ||||| Sbjct: 742 gaaagtgaggta 753 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 178 bits (90), Expect = 4e-41 Identities = 140/156 (89%), Gaps = 3/156 (1%) Strand = Plus / Plus Query: 452 gaggatgaggaggaggaagaggagcgagaa---aagaaggcggtgttggtgatcgacaag 508 ||||| ||||||||||| ||||||| |||| ||||||||| || |||||||||||||| Sbjct: 28567034 gaggaggaggaggaggaggaggagcaagaagagaagaaggcgatggtggtgatcgacaag 28567093 Query: 509 gagagggtgcggatactgcaggagaggcggtgcgatagcaaggggagagggggcgtgtac 568 |||||||||||||| ||||||||| || |||| || ||||||||||| || | ||||||| Sbjct: 28567094 gagagggtgcggatcctgcaggagcggaggtgtgacagcaaggggaggggcgccgtgtac 28567153 Query: 569 gaccctgttcttgggatttgctgccatttctgcagg 604 |||||||||||||||||||||||||||||||||||| Sbjct: 28567154 gaccctgttcttgggatttgctgccatttctgcagg 28567189 Score = 131 bits (66), Expect = 9e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 919 tatcagagatggaagaggccaggaagaacaagaattggatgtgccctcactgcattgagg 978 ||||||| ||||| |||| ||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 28567681 tatcagacatggatgaggtcaggaagaacaagaactggatgtgccctcactgtattgagg 28567740 Query: 979 agaagggtatcaagaaattctggatatgcaacag 1012 ||||||||| |||||||||||||||||| ||||| Sbjct: 28567741 agaagggtaccaagaaattctggatatgtaacag 28567774 Score = 125 bits (63), Expect = 6e-25 Identities = 90/99 (90%) Strand = Plus / Plus Query: 747 tcaatctttgacagggaagacggagtgctcctcttgccattcgtcgaatgggatactctg 806 |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| || Sbjct: 28567509 tcaatctttgacagggaagacggattgctcctcttgccattcttcttatggaatactgtg 28567568 Query: 807 ccgtgcttgcctgaaagtcaggtacggcgaaggtaagct 845 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 28567569 ccgtgcttgcctgaaagtgaggtatggggaaggtaagct 28567607 Score = 105 bits (53), Expect = 5e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 73 cgccgccgccgccatgggaagtctcggcgacaagtccgactacgagagcatccgcgacgc 132 ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||| Sbjct: 28566423 cgccgccaccgccatggggagtctcggcggcaagtccgactacgagagcgtccgcgacgc 28566482 Query: 133 acgcatctcggagaacatggt 153 |||||||| |||||| |||| Sbjct: 28566483 ccgcatctccgagaacctggt 28566503 Score = 97.6 bits (49), Expect = 1e-16 Identities = 61/65 (93%) Strand = Plus / Plus Query: 155 cggatggagatgctcggcctgcgccgctgcgccggggagctaagcgccattgcctccgcc 214 ||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| Sbjct: 28566627 cggatggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccgcc 28566686 Query: 215 tccgc 219 ||||| Sbjct: 28566687 tccgc 28566691 Score = 89.7 bits (45), Expect = 3e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 1076 gcaagggtacgcgtcggttgcgcaccttctcatggacaggctgaagtgccgagcattctg 1135 |||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 28568061 gcaaggttacgagtctgttgcgcaccttctcatggacaagctgaagtgccgagcattctg 28568120 Query: 1136 a 1136 | Sbjct: 28568121 a 28568121 Score = 85.7 bits (43), Expect = 5e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 1010 cagctccatctgcttgaagaagaggaagatagcaccaactgggattgccatatatgacg 1068 |||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||| Sbjct: 28567872 cagctccatctgcttgaagaagaggaagttatcaccaactggaattgccatatacgacg 28567930 Score = 79.8 bits (40), Expect = 3e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 602 aggcagaagaaattgtgcggggaggaggactgcaagcactgcggcgaaggagactttgac 661 |||||||||||||||||||| ||||||| |||||||| |||||| ||||||||| | || Sbjct: 28567351 aggcagaagaaattgtgcggcgaggagggctgcaagcgctgcggggaaggagacctgaac 28567410 Query: 662 cagccatgcctaggta 677 ||||| ||| |||||| Sbjct: 28567411 cagccttgcataggta 28567426 >gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 178 bits (90), Expect = 4e-41 Identities = 140/156 (89%), Gaps = 3/156 (1%) Strand = Plus / Plus Query: 452 gaggatgaggaggaggaagaggagcgagaa---aagaaggcggtgttggtgatcgacaag 508 ||||| ||||||||||| ||||||| |||| ||||||||| || |||||||||||||| Sbjct: 69840 gaggaggaggaggaggaggaggagcaagaagagaagaaggcgatggtggtgatcgacaag 69899 Query: 509 gagagggtgcggatactgcaggagaggcggtgcgatagcaaggggagagggggcgtgtac 568 |||||||||||||| ||||||||| || |||| || ||||||||||| || | ||||||| Sbjct: 69900 gagagggtgcggatcctgcaggagcggaggtgtgacagcaaggggaggggcgccgtgtac 69959 Query: 569 gaccctgttcttgggatttgctgccatttctgcagg 604 |||||||||||||||||||||||||||||||||||| Sbjct: 69960 gaccctgttcttgggatttgctgccatttctgcagg 69995 Score = 131 bits (66), Expect = 9e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 919 tatcagagatggaagaggccaggaagaacaagaattggatgtgccctcactgcattgagg 978 ||||||| ||||| |||| ||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 70487 tatcagacatggatgaggtcaggaagaacaagaactggatgtgccctcactgtattgagg 70546 Query: 979 agaagggtatcaagaaattctggatatgcaacag 1012 ||||||||| |||||||||||||||||| ||||| Sbjct: 70547 agaagggtaccaagaaattctggatatgtaacag 70580 Score = 125 bits (63), Expect = 6e-25 Identities = 90/99 (90%) Strand = Plus / Plus Query: 747 tcaatctttgacagggaagacggagtgctcctcttgccattcgtcgaatgggatactctg 806 |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| || Sbjct: 70315 tcaatctttgacagggaagacggattgctcctcttgccattcttcttatggaatactgtg 70374 Query: 807 ccgtgcttgcctgaaagtcaggtacggcgaaggtaagct 845 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 70375 ccgtgcttgcctgaaagtgaggtatggggaaggtaagct 70413 Score = 105 bits (53), Expect = 5e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 73 cgccgccgccgccatgggaagtctcggcgacaagtccgactacgagagcatccgcgacgc 132 ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||| Sbjct: 69229 cgccgccaccgccatggggagtctcggcggcaagtccgactacgagagcgtccgcgacgc 69288 Query: 133 acgcatctcggagaacatggt 153 |||||||| |||||| |||| Sbjct: 69289 ccgcatctccgagaacctggt 69309 Score = 97.6 bits (49), Expect = 1e-16 Identities = 61/65 (93%) Strand = Plus / Plus Query: 155 cggatggagatgctcggcctgcgccgctgcgccggggagctaagcgccattgcctccgcc 214 ||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| Sbjct: 69433 cggatggagatgctcggcctgcgccgctgcgccggggagttcagtgccatcgcctccgcc 69492 Query: 215 tccgc 219 ||||| Sbjct: 69493 tccgc 69497 Score = 89.7 bits (45), Expect = 3e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 1076 gcaagggtacgcgtcggttgcgcaccttctcatggacaggctgaagtgccgagcattctg 1135 |||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 70867 gcaaggttacgagtctgttgcgcaccttctcatggacaagctgaagtgccgagcattctg 70926 Query: 1136 a 1136 | Sbjct: 70927 a 70927 Score = 85.7 bits (43), Expect = 5e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 1010 cagctccatctgcttgaagaagaggaagatagcaccaactgggattgccatatatgacg 1068 |||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||| Sbjct: 70678 cagctccatctgcttgaagaagaggaagttatcaccaactggaattgccatatacgacg 70736 Score = 79.8 bits (40), Expect = 3e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 602 aggcagaagaaattgtgcggggaggaggactgcaagcactgcggcgaaggagactttgac 661 |||||||||||||||||||| ||||||| |||||||| |||||| ||||||||| | || Sbjct: 70157 aggcagaagaaattgtgcggcgaggagggctgcaagcgctgcggggaaggagacctgaac 70216 Query: 662 cagccatgcctaggta 677 ||||| ||| |||||| Sbjct: 70217 cagccttgcataggta 70232 >gb|AY023093.1| Oryza sativa microsatellite MRG5418 containing (GAG)X8, closest to marker S738, genomic sequence Length = 224 Score = 115 bits (58), Expect = 5e-22 Identities = 108/124 (87%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 452 gaggatgaggaggaggaagaggagcgagaa---aagaaggcggtgttggtgatcgacaag 508 ||||| ||||||||||| ||||||| |||| ||||||||| || |||||||||||||| Sbjct: 101 gaggaggaggaggaggaggaggagcaagaagagaagaaggcgatggtggtgatcgacaag 160 Query: 509 gagagggtgcggatactgcaggagaggcggtgcgatagcaaggggagagggggcgtgtac 568 |||||||||||||| ||||||||| || |||| || ||||||||||| || | ||||||| Sbjct: 161 gagagggtgcggatcctgcaggagcggaggtgtgacagcaaggggaggggcgccgtgtac 220 Query: 569 gacc 572 |||| Sbjct: 221 gacc 224