BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf032m19 (1099 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001074685.1| Oryza sativa (japonica cultivar-group) Os11g... 464 e-127 dbj|AK059555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 456 e-125 gb|AF027808.1|AF027808 Zea mays HCF106 precursor protein (Hcf106... 440 e-120 gb|AF237945.1|AF237945 Zea mays HCF106C precursor protein (Hcf10... 379 e-101 gb|AY109585.1| Zea mays CL1262_1 mRNA sequence 379 e-101 >ref|NM_001074685.1| Oryza sativa (japonica cultivar-group) Os11g0580800 (Os11g0580800) mRNA, complete cds Length = 1217 Score = 464 bits (234), Expect = e-127 Identities = 473/553 (85%), Gaps = 6/553 (1%) Strand = Plus / Plus Query: 248 caaaagaacaagtcgcagaaatggtgtttacgcttctttatttggtgttggagctcccga 307 ||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| Sbjct: 435 caaaagaacaagtcgtggaacgggtgtttatgcttctttatttggagttggagctcccga 494 Query: 308 agctctggtcattggagtggttgctttgctggtttttggccccaagggtctagcagaggt 367 ||||||||||||||||||||||||| || | || ||||| ||||| || ||||||||||| Sbjct: 495 agctctggtcattggagtggttgctctgttagtctttggtcccaaaggactagcagaggt 554 Query: 368 agccaggaatttggggaagactttgcgtgctttccaaccaaccattagagagctacagga 427 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 555 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagga 614 Query: 428 tgtatcaagggagttcaagagcactcttgaacgagaaattggacttgatgaggctccccc 487 ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 615 tgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatgaagttccccc 674 Query: 488 atccacgaattataggcccacaaccatgaataacagccaacaacctgctgtcgacc---- 543 ||| | ||| || |||||| | ||||||||||| || || ||||||||| | |||| Sbjct: 675 atcaatgaactacaggcccccgaccatgaataatagtcagcaacctgctattgaccaaag 734 Query: 544 --cgaatggcaagcctgaaaccgcgccttacaccagtgaagaactcatgaaggtaactga 601 || ||| |||||||| | || ||||||||||||||||||||||| || |||||||| Sbjct: 735 ctcggatgataagcctgaggctgcaccttacaccagtgaagaactcatcaaagtaactga 794 Query: 602 agaacagttggctgcatccgcagctgctgcttggaatacgcaacaacctcccccatcaca 661 |||||| | ||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 795 agaacaactagctgcgtctgcagctgctgcttggaatactcaagaacctcctccatcaca 854 Query: 662 acagcaagaagcagcgtcaacgtctcaaagtaaggaggcggctttatcaggagggaatga 721 || |||||||||| | || ||| ||||||| || | ||| ||||| |||||| ||| Sbjct: 855 gcaaaaagaagcagcagctacttctgaaagtaatgacggtgctatatcaagagggagtga 914 Query: 722 tggtcctggtgctgcgacgagggagtcgaatccaagccattctgagaaggcggaaacgga 781 |||| |||||||||| | ||| ||| | |||| | | |||||||||| ||||||| || Sbjct: 915 tggtgctggtgctgcaatgagtgagcccaatcggaacatttctgagaagacggaaaccga 974 Query: 782 gagatgaagcata 794 ||||||||||||| Sbjct: 975 gagatgaagcata 987 >dbj|AK059555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G07, full insert sequence Length = 1217 Score = 456 bits (230), Expect = e-125 Identities = 472/553 (85%), Gaps = 6/553 (1%) Strand = Plus / Plus Query: 248 caaaagaacaagtcgcagaaatggtgtttacgcttctttatttggtgttggagctcccga 307 ||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| Sbjct: 435 caaaagaacaagtcgtggaacgggtgtttatgcttctttatttggagttggagctcccga 494 Query: 308 agctctggtcattggagtggttgctttgctggtttttggccccaagggtctagcagaggt 367 ||||||||||||||||||||||||| || | || ||||| ||||| || ||||||||||| Sbjct: 495 agctctggtcattggagtggttgctctgttagtctttggtcccaaaggactagcagaggt 554 Query: 368 agccaggaatttggggaagactttgcgtgctttccaaccaaccattagagagctacagga 427 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 555 agccaggaatttggggaagactttgcgtgctttccagccaaccattagagagctacagga 614 Query: 428 tgtatcaagggagttcaagagcactcttgaacgagaaattggacttgatgaggctccccc 487 ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 615 tgtttcaagggagttcaggagcactcttgaacgagaaattggacttgatgaagttccccc 674 Query: 488 atccacgaattataggcccacaaccatgaataacagccaacaacctgctgtcgacc---- 543 ||| | ||| || |||||| | ||||||||||| || || ||||||||| | |||| Sbjct: 675 atcaatgaactacaggcccccgaccatgaataatagtcagcaacctgctattgaccaaag 734 Query: 544 --cgaatggcaagcctgaaaccgcgccttacaccagtgaagaactcatgaaggtaactga 601 || ||| |||||||| | || ||||||||||||||||||||||| || |||||||| Sbjct: 735 ctcggatgataagcctgaggctgcaccttacaccagtgaagaactcatcaaagtaactga 794 Query: 602 agaacagttggctgcatccgcagctgctgcttggaatacgcaacaacctcccccatcaca 661 |||||| | ||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 795 agaacaactagctgcgtctgcagctgctgcttggaatactcaagaacctcctccatcaca 854 Query: 662 acagcaagaagcagcgtcaacgtctcaaagtaaggaggcggctttatcaggagggaatga 721 || |||||||||| | | ||| ||||||| || | ||| ||||| |||||| ||| Sbjct: 855 gcaaaaagaagcagcagctgcttctgaaagtaatgacggtgctatatcaagagggagtga 914 Query: 722 tggtcctggtgctgcgacgagggagtcgaatccaagccattctgagaaggcggaaacgga 781 |||| |||||||||| | ||| ||| | |||| | | |||||||||| ||||||| || Sbjct: 915 tggtgctggtgctgcaatgagtgagcccaatcggaacatttctgagaagacggaaaccga 974 Query: 782 gagatgaagcata 794 ||||||||||||| Sbjct: 975 gagatgaagcata 987 >gb|AF027808.1|AF027808 Zea mays HCF106 precursor protein (Hcf106) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1125 Score = 440 bits (222), Expect = e-120 Identities = 348/390 (89%) Strand = Plus / Plus Query: 288 tttggtgttggagctcccgaagctctggtcattggagtggttgctttgctggtttttggc 347 ||||| ||||||||||||||||| |||||||||||||| || || ||| |||| || ||| Sbjct: 268 tttggagttggagctcccgaagcactggtcattggagtagtcgccttgttggtattcggc 327 Query: 348 cccaagggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaacca 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 cccaagggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaacca 387 Query: 408 accattagagagctacaggatgtatcaagggagttcaagagcactcttgaacgagaaatt 467 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 388 accattagagagctacaggatgtatcaagggagttcaggagcactcttgaacgagaaatc 447 Query: 468 ggacttgatgaggctcccccatccacgaattataggcccacaaccatgaataacagccaa 527 ||| ||||||||| | ||| ||| ||||| ||||||||||||||||||||||||| |||| Sbjct: 448 ggaattgatgaggtttcccaatcaacgaactataggcccacaaccatgaataacaaccaa 507 Query: 528 caacctgctgtcgacccgaatggcaagcctgaaaccgcgccttacaccagtgaagaactc 587 |||||||||| |||||| |||| |||||||||| | || ||||| || || || ||||| Sbjct: 508 caacctgctgccgacccaaatgtcaagcctgaaccagcaccttatactagcgaggaacta 567 Query: 588 atgaaggtaactgaagaacagttggctgcatccgcagctgctgcttggaatacgcaacaa 647 ||||| |||||||||||||| | |||||||| || ||||||||||||||| | ||||| Sbjct: 568 atgaaagtaactgaagaacaaattgctgcatcagctgctgctgcttggaatccacaacag 627 Query: 648 cctcccccatcacaacagcaagaagcagcg 677 ||| || | || ||||||||||||| |||| Sbjct: 628 cctgccacgtcgcaacagcaagaagaagcg 657 >gb|AF237945.1|AF237945 Zea mays HCF106C precursor protein (Hcf106C) mRNA, complete cds; chloroplast gene for chloroplast product Length = 1091 Score = 379 bits (191), Expect = e-101 Identities = 332/379 (87%) Strand = Plus / Plus Query: 294 gttggagctcccgaagctctggtcattggagtggttgctttgctggtttttggccccaag 353 ||||||||||||||||| |||||||||||||| || || ||| |||| || ||||||||| Sbjct: 269 gttggagctcccgaagcactggtcattggagtagtcgccttgttggtgttcggccccaag 328 Query: 354 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 388 Query: 414 agagagctacaggatgtatcaagggagttcaagagcactcttgaacgagaaattggactt 473 |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| || Sbjct: 389 agagagatacaggatgtatcaagggagttcaggagcactcttgaacgagaaatcggaatt 448 Query: 474 gatgaggctcccccatccacgaattataggcccacaaccatgaataacagccaacaacct 533 ||||||| | ||| || |||||||||| ||||| ||||||||||||| |||||||||| Sbjct: 449 gatgaggtttcccagtcgacgaattatacacccacgaccatgaataacaaccaacaacct 508 Query: 534 gctgtcgacccgaatggcaagcctgaaaccgcgccttacaccagtgaagaactcatgaag 593 |||| |||| | ||| |||||||| | | || ||||||||||| || ||||| |||| Sbjct: 509 gctgccgactcaaatatcaagcctgcacctgcaccttacaccagcgatgaacttgtgaaa 568 Query: 594 gtaactgaagaacagttggctgcatccgcagctgctgcttggaatacgcaacaacctccc 653 |||||||||||||| | |||||||| || ||||| |||||||| ||||||||||| | Sbjct: 569 gtaactgaagaacaaattgctgcatcagctgctgcagcttggaacccgcaacaacctgca 628 Query: 654 ccatcacaacagcaagaag 672 | || ||||||||||||| Sbjct: 629 tcgtcgcaacagcaagaag 647 >gb|AY109585.1| Zea mays CL1262_1 mRNA sequence Length = 1091 Score = 379 bits (191), Expect = e-101 Identities = 332/379 (87%) Strand = Plus / Plus Query: 294 gttggagctcccgaagctctggtcattggagtggttgctttgctggtttttggccccaag 353 ||||||||||||||||| |||||||||||||| || || ||| |||| || ||||||||| Sbjct: 269 gttggagctcccgaagcactggtcattggagtagtcgccttgttggtgttcggccccaag 328 Query: 354 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 ggtctagcagaggtagccaggaatttggggaagactttgcgtgctttccaaccaaccatt 388 Query: 414 agagagctacaggatgtatcaagggagttcaagagcactcttgaacgagaaattggactt 473 |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| || Sbjct: 389 agagagatacaggatgtatcaagggagttcaggagcactcttgaacgagaaatcggaatt 448 Query: 474 gatgaggctcccccatccacgaattataggcccacaaccatgaataacagccaacaacct 533 ||||||| | ||| || |||||||||| ||||| ||||||||||||| |||||||||| Sbjct: 449 gatgaggtttcccagtcgacgaattatacacccacgaccatgaataacaaccaacaacct 508 Query: 534 gctgtcgacccgaatggcaagcctgaaaccgcgccttacaccagtgaagaactcatgaag 593 |||| |||| | ||| |||||||| | | || ||||||||||| || ||||| |||| Sbjct: 509 gctgccgactcaaatatcaagcctgcacctgcaccttacaccagcgatgaacttgtgaaa 568 Query: 594 gtaactgaagaacagttggctgcatccgcagctgctgcttggaatacgcaacaacctccc 653 |||||||||||||| | |||||||| || ||||| |||||||| ||||||||||| | Sbjct: 569 gtaactgaagaacaaattgctgcatcagctgctgcagcttggaacccgcaacaacctgca 628 Query: 654 ccatcacaacagcaagaag 672 | || ||||||||||||| Sbjct: 629 tcgtcgcaacagcaagaag 647