BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf030g01 (830 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001054230.1| Oryza sativa (japonica cultivar-group) Os02g... 500 e-138 emb|CT835320.1| Oryza sativa (indica cultivar-group) cDNA clone:... 492 e-135 dbj|AK242556.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 492 e-135 dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 m... 472 e-129 emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein 357 5e-95 >ref|NM_001054230.1| Oryza sativa (japonica cultivar-group) Os02g0670400 (Os02g0670400) mRNA, complete cds Length = 635 Score = 500 bits (252), Expect = e-138 Identities = 455/520 (87%), Gaps = 7/520 (1%) Strand = Plus / Plus Query: 110 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggcctctgccg 169 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | || Sbjct: 121 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 180 Query: 170 gcgccggcaagcggaagaaggccgcggtcagtggcaagcccaagcgcccgccctccgcct 229 ||||||| ||||||||||||||||| | || |||||||| ||||||||||| || || | Sbjct: 181 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 240 Query: 230 tcttcgtcttcatgtctgaattcaggcaggagtatcaggcgcagcaccctaacaataaga 289 ||||||||||||||||||| |||||||||||||| ||||| ||| ||| |||| |||| Sbjct: 241 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctgacaacaaga 300 Query: 290 gcgtcgccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaga 349 | |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct: 301 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 360 Query: 350 aggtgccttatgtggaccaggctgggcagaagaagcaggactatgagaagagcaaagcca 409 ||| |||||||||||| ||||||| || |||||||||||||| ||||||| ||| |||| Sbjct: 361 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 420 Query: 410 ccttcgataataaggagagcacaaggtcaaagaaggctaagactgaggaggacgaggggg 469 ||||||||| |||||||||||||| |||||||| |||||||| | || || || | Sbjct: 421 acttcgataagaaggagagcacaagctcaaagaaagctaagac---ccatgatgatggag 477 Query: 470 aaggctctgacaagtccaagtctgaggtcaatgatgacgacgaggatggtggcagcgatg 529 ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||| Sbjct: 478 aaggctctgacaagtccaagtctgaggtc---gacgatgaccaggatggtggtagcgatg 534 Query: 530 aggaaaacgaggaagatgatgagtaaatattgtatcctggggcatgaggtagcaaattgg 589 ||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||| || Sbjct: 535 aggaaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgt 594 Query: 590 gtttcaggtccccgattagc-ttactagtttgctatcttc 628 || | |||||||| |||||| ||||||||||||||||||| Sbjct: 595 gtcttaggtcccctattagctttactagtttgctatcttc 634 >emb|CT835320.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA057N02, full insert sequence Length = 794 Score = 492 bits (248), Expect = e-135 Identities = 454/520 (87%), Gaps = 7/520 (1%) Strand = Plus / Plus Query: 110 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggcctctgccg 169 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | || Sbjct: 75 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 134 Query: 170 gcgccggcaagcggaagaaggccgcggtcagtggcaagcccaagcgcccgccctccgcct 229 ||||||| ||||||||||||||||| | || |||||||| ||||||||||| || || | Sbjct: 135 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 194 Query: 230 tcttcgtcttcatgtctgaattcaggcaggagtatcaggcgcagcaccctaacaataaga 289 ||||||||||||||||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct: 195 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaaga 254 Query: 290 gcgtcgccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaga 349 | |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct: 255 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 314 Query: 350 aggtgccttatgtggaccaggctgggcagaagaagcaggactatgagaagagcaaagcca 409 ||| |||||||||||| ||||||| || |||||||||||||| ||||||| ||| |||| Sbjct: 315 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 374 Query: 410 ccttcgataataaggagagcacaaggtcaaagaaggctaagactgaggaggacgaggggg 469 ||||||||| |||||||||||||| |||||||| |||||||| | || || || | Sbjct: 375 acttcgataagaaggagagcacaagctcaaagaaagctaagac---ccatgatgatggag 431 Query: 470 aaggctctgacaagtccaagtctgaggtcaatgatgacgacgaggatggtggcagcgatg 529 ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||| Sbjct: 432 aaggctctgacaagtccaagtctgaggtc---gacgatgaccaggatggtggtagcgatg 488 Query: 530 aggaaaacgaggaagatgatgagtaaatattgtatcctggggcatgaggtagcaaattgg 589 ||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||| || Sbjct: 489 aggaaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgt 548 Query: 590 gtttcaggtccccgattagc-ttactagtttgctatcttc 628 || | |||||||| |||||| ||||||||||||||||||| Sbjct: 549 gtcttaggtcccctattagctttactagtttgctatcttc 588 Score = 87.7 bits (44), Expect = 7e-14 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 711 agtgtattagcaaagaaaaagcc-gaatgctgctagctgttctgttgcttttcttttgct 769 |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct: 669 agtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgct 728 Query: 770 aaccactt 777 |||||||| Sbjct: 729 aaccactt 736 >dbj|AK242556.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090001B08, full insert sequence Length = 851 Score = 492 bits (248), Expect = e-135 Identities = 454/520 (87%), Gaps = 7/520 (1%) Strand = Plus / Plus Query: 110 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggcctctgccg 169 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | || Sbjct: 136 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 195 Query: 170 gcgccggcaagcggaagaaggccgcggtcagtggcaagcccaagcgcccgccctccgcct 229 ||||||| ||||||||||||||||| | || |||||||| ||||||||||| || || | Sbjct: 196 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 255 Query: 230 tcttcgtcttcatgtctgaattcaggcaggagtatcaggcgcagcaccctaacaataaga 289 ||||||||||| ||||||| |||||||||||||| ||||| ||| ||| |||| |||| Sbjct: 256 tcttcgtcttcgtgtctgagttcaggcaggagtaccaggcagcgcatcctgacaacaaga 315 Query: 290 gcgtcgccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaga 349 | |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct: 316 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 375 Query: 350 aggtgccttatgtggaccaggctgggcagaagaagcaggactatgagaagagcaaagcca 409 ||| |||||||||||| ||||||| || |||||||||||||| ||||||| ||| |||| Sbjct: 376 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 435 Query: 410 ccttcgataataaggagagcacaaggtcaaagaaggctaagactgaggaggacgaggggg 469 ||||||||| |||||||||||||| |||||||| |||||||| | || || || | Sbjct: 436 acttcgataagaaggagagcacaagctcaaagaaagctaagac---ccatgatgatggag 492 Query: 470 aaggctctgacaagtccaagtctgaggtcaatgatgacgacgaggatggtggcagcgatg 529 ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||| Sbjct: 493 aaggctctgacaagtccaagtctgaggtc---gacgatgaccaggatggtggtagcgatg 549 Query: 530 aggaaaacgaggaagatgatgagtaaatattgtatcctggggcatgaggtagcaaattgg 589 ||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||| || Sbjct: 550 aggaaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgt 609 Query: 590 gtttcaggtccccgattagc-ttactagtttgctatcttc 628 || | |||||||| |||||| ||||||||||||||||||| Sbjct: 610 gtcttaggtcccctattagctttactagtttgctatcttc 649 Score = 87.7 bits (44), Expect = 7e-14 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 711 agtgtattagcaaagaaaaagcc-gaatgctgctagctgttctgttgcttttcttttgct 769 |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||| Sbjct: 731 agtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgct 790 Query: 770 aaccactt 777 |||||||| Sbjct: 791 aaccactt 798 >dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high mobility group box protein 2, complete cds Length = 634 Score = 472 bits (238), Expect = e-129 Identities = 452/520 (86%), Gaps = 8/520 (1%) Strand = Plus / Plus Query: 110 ccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggcctctgccg 169 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | || Sbjct: 121 ccatgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcg 180 Query: 170 gcgccggcaagcggaagaaggccgcggtcagtggcaagcccaagcgcccgccctccgcct 229 ||||||| ||||||||||||||||| | || |||||||| ||||||||||| || || | Sbjct: 181 gcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctt 240 Query: 230 tcttcgtcttcatgtctgaattcaggcaggagtatcaggcgcagcaccctaacaataaga 289 ||||||||||||||||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct: 241 tcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaaga 300 Query: 290 gcgtcgccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaagaga 349 | |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct: 301 gtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagaga 360 Query: 350 aggtgccttatgtggaccaggctgggcagaagaagcaggactatgagaagagcaaagcca 409 ||| |||||||||||| ||||||| || |||||||||||||| ||||||| ||| |||| Sbjct: 361 aggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggcca 420 Query: 410 ccttcgataataaggagagcacaaggtcaaagaaggctaagactgaggaggacgaggggg 469 ||||||||| |||||||||||||| |||||||| |||||||| | || || || | Sbjct: 421 acttcgataagaaggagagcacaagctcaaagaaagctaagac---ccatgatgatggag 477 Query: 470 aaggctctgacaagtccaagtctgaggtcaatgatgacgacgaggatggtggcagcgatg 529 ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||| Sbjct: 478 aaggctctgacaagtccaagtctgaggtc---gacgatgaccaggatggtggtagcgatg 534 Query: 530 aggaaaacgaggaagatgatgagtaaatattgtatcctggggcatgaggtagcaaattgg 589 ||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||| || Sbjct: 535 aggaaaatgaggacgatgaagagtaaatagtgtatcc-ggggcatgaggtagcaaactgt 593 Query: 590 gtttcaggtccccgattagc-ttactagtttgctatcttc 628 || | ||||||| |||| | ||||||||||||||||||| Sbjct: 594 gtcttaggtcccatattasctttactagtttgctatcttc 633 >emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein Length = 784 Score = 357 bits (180), Expect = 5e-95 Identities = 309/352 (87%) Strand = Plus / Plus Query: 107 ccaccatgaagggcaaggctgacacctccaagaagggcgagggcaggctcaaggcctctg 166 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 84 ccaccatgaagggcaaggctgacacctccaagaaggacgagggcaggctccgggcgggcg 143 Query: 167 ccggcgccggcaagcggaagaaggccgcggtcagtggcaagcccaagcgcccgccctccg 226 || |||||| ||||| ||||||||||| | || ||||||||||||||||||||||||| Sbjct: 144 gcgccgccggaaagcgcaagaaggccgccgcgagcggcaagcccaagcgcccgccctccg 203 Query: 227 ccttcttcgtcttcatgtctgaattcaggcaggagtatcaggcgcagcaccctaacaata 286 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | Sbjct: 204 ccttcttcgtcttcatgtctgaattcaggcaggagtatcaggcgctgcaccctggcaaca 263 Query: 287 agagcgtcgccgccgtgagcaaggcggcaggggagaagtggcgatctatgtctgaggaag 346 ||||||| || ||||||||||||| |||||||| |||||||| ||||||| || ||| Sbjct: 264 agagcgttgcgaccgtgagcaaggcagcaggggaaaagtggcgtgctatgtcagatcaag 323 Query: 347 agaaggtgccttatgtggaccaggctgggcagaagaagcaggactatgagaagagcaaag 406 ||||| || ||||||||||| ||||| ||||||||||||||||||||||||| || | Sbjct: 324 agaagcaaccatatgtggaccaagctggacagaagaagcaggactatgagaagactaagg 383 Query: 407 ccaccttcgataataaggagagcacaaggtcaaagaaggctaagactgagga 458 | | ||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 384 caaactttgataagaaggagagcacaagctcaaagaaggctaagactgagga 435 Score = 127 bits (64), Expect = 8e-26 Identities = 67/68 (98%) Strand = Plus / Plus Query: 710 tagtgtattagcaaagaaaaagccgaatgctgctagctgttctgttgcttttcttttgct 769 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 tagtgcattagcaaagaaaaagccgaatgctgctagctgttctgttgcttttcttttgct 705 Query: 770 aaccactt 777 |||||||| Sbjct: 706 aaccactt 713