BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf026c02 (1151 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001053574.1| Oryza sativa (japonica cultivar-group) Os02g... 406 e-110 emb|CT831964.1| Oryza sativa (indica cultivar-group) cDNA clone:... 398 e-107 dbj|AK111881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 398 e-107 gb|AF192261.1|AF192261 Hordeum vulgare Rar1 (Rar1) mRNA, complet... 383 e-102 gb|EF202841.1| Triticum aestivum RAR1 (RAR1) mRNA, RAR1-1 allele... 339 2e-89 >ref|NM_001053574.1| Oryza sativa (japonica cultivar-group) Os02g0535400 (Os02g0535400) mRNA, partial cds Length = 1125 Score = 406 bits (205), Expect = e-110 Identities = 400/465 (86%) Strand = Plus / Plus Query: 430 aagcatacaactgaaaaaccagtcacaaaggctgtttctgctaaccctccaaaggcagct 489 ||||| |||||||| |||||| ||||||| || ||| || |||| || ||||||||| | Sbjct: 334 aagcacacaactgagaaaccaatcacaaaagcagttcctactaaaccatcaaaggcagtt 393 Query: 490 ccaatccagtcttctaagcagggtgtgggaactgatgcctgctcaagatgctgtcagggt 549 ||| ||||| |||| |||||| |||||||| |||| | |||||||| ||| |||| ||| Sbjct: 394 ccagtccagacttcgaagcagagtgtgggagctgacacttgctcaaggtgccgtcaaggt 453 Query: 550 ttcttttgctctgaccatggatcacagcccaaggcacaaaaaccagctgctaccaatggt 609 |||||||||||||||||||||||||| ||||||||||||| |||| | ||||||| || | Sbjct: 454 ttcttttgctctgaccatggatcacaacccaaggcacaaataccaaccgctaccagtgat 513 Query: 610 acaaacatggaacctgttgagaaaccctcagttccaccacccaagaaaaaaattgatctg 669 || ||||||| |||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 514 actaacatggtacctgttgagaagcctgcagttccaccaccaaagaaaaaaattgatctg 573 Query: 670 aatgagccaaggatttgcaagaacaaaggatgcggtaaaacttacaaggaaaaggataac 729 |||||||| ||| |||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 574 aatgagcctagggtttgtaagaacaaaggatgtggtaaaacctacaaggagaaggataat 633 Query: 730 catgatgctgcatgccaatatcatccaggtccagcagttttccatgataggatgagaggg 789 ||||||| |||||| | || |||||||| || |||||||| | || ||||| |||||| Sbjct: 634 catgatgaagcatgcgattaccatccaggacctgcagtttttcgcgacaggattagaggg 693 Query: 790 tggaaatgctgtgatattcatgtcaaggagtttgatgagtttatggagatacctccatgc 849 |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||| Sbjct: 694 tggaaatgttgtgatattcatgtcaaggaatttgatgaatttatggagatccctccgtgc 753 Query: 850 acaaaagggtggcacaacgctgatgctgcttgaattgacaccatg 894 ||||| || |||||||| |||||||| || |||||| ||||||| Sbjct: 754 acaaagggttggcacaatgctgatgccgcatgaattttcaccatg 798 Score = 113 bits (57), Expect = 2e-21 Identities = 78/85 (91%) Strand = Plus / Plus Query: 96 ccggtgcggtgccagcggattggctgcgacgccatgttcactgaagacgacaaccccgac 155 |||| ||||||||||||||| ||||||||||||| |||||| || ||| ||||||||||| Sbjct: 150 ccggcgcggtgccagcggataggctgcgacgccacgttcaccgacgacaacaaccccgac 209 Query: 156 ggctcctgccactaccacccctccg 180 ||||||||||| ||||||||||||| Sbjct: 210 ggctcctgccaataccacccctccg 234 Score = 93.7 bits (47), Expect = 1e-15 Identities = 74/83 (89%) Strand = Plus / Plus Query: 262 cctatatttcatgacggcatgaaagagtggagctgttgcaagcaaagaagccacgatttt 321 ||||| |||||||| ||||||||| ||||||| || || ||||||| |||||| |||||| Sbjct: 238 cctatgtttcatgatggcatgaaacagtggagttgctgtaagcaaaaaagccatgatttt 297 Query: 322 agcttatttttggctattcctgg 344 ||| ||||||||||||||||||| Sbjct: 298 agcctatttttggctattcctgg 320 >emb|CT831964.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117B21, full insert sequence Length = 1086 Score = 398 bits (201), Expect = e-107 Identities = 399/465 (85%) Strand = Plus / Plus Query: 430 aagcatacaactgaaaaaccagtcacaaaggctgtttctgctaaccctccaaaggcagct 489 ||||| |||||||| |||||| ||||||| || ||| || || | || ||||||||| | Sbjct: 344 aagcacacaactgagaaaccaatcacaaaagcagttcctactgaaccatcaaaggcagtt 403 Query: 490 ccaatccagtcttctaagcagggtgtgggaactgatgcctgctcaagatgctgtcagggt 549 ||| ||||| |||| |||||| |||||||| |||| | |||||||| ||| |||| ||| Sbjct: 404 ccagtccagacttcgaagcagagtgtgggagctgacacttgctcaaggtgccgtcaaggt 463 Query: 550 ttcttttgctctgaccatggatcacagcccaaggcacaaaaaccagctgctaccaatggt 609 |||||||||||||||||||||||||| ||||||||||||| |||| | ||||||| || | Sbjct: 464 ttcttttgctctgaccatggatcacaacccaaggcacaaataccaaccgctaccagtgat 523 Query: 610 acaaacatggaacctgttgagaaaccctcagttccaccacccaagaaaaaaattgatctg 669 || ||||||| |||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 524 actaacatggtacctgttgagaagcctgcagttccaccaccaaagaaaaaaattgatctg 583 Query: 670 aatgagccaaggatttgcaagaacaaaggatgcggtaaaacttacaaggaaaaggataac 729 |||||||| ||| |||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 584 aatgagcctagggtttgtaagaacaaaggatgtggtaaaacctacaaggagaaggataat 643 Query: 730 catgatgctgcatgccaatatcatccaggtccagcagttttccatgataggatgagaggg 789 ||||||| |||||| | || |||||||| || |||||||| | || ||||| |||||| Sbjct: 644 catgatgaagcatgcgattaccatccaggacctgcagtttttcgcgacaggattagaggg 703 Query: 790 tggaaatgctgtgatattcatgtcaaggagtttgatgagtttatggagatacctccatgc 849 |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||| Sbjct: 704 tggaaatgttgtgatattcatgtcaaggaatttgatgaatttatggagatccctccgtgc 763 Query: 850 acaaaagggtggcacaacgctgatgctgcttgaattgacaccatg 894 ||||| || |||||||| |||||||| || |||||| ||||||| Sbjct: 764 acaaagggttggcacaatgctgatgccgcatgaattttcaccatg 808 Score = 117 bits (59), Expect = 1e-22 Identities = 80/87 (91%) Strand = Plus / Plus Query: 96 ccggtgcggtgccagcggattggctgcgacgccatgttcactgaagacgacaaccccgac 155 |||| ||||||||||||||| ||||||||||||| |||||| || ||| ||||||||||| Sbjct: 161 ccggcgcggtgccagcggataggctgcgacgccacgttcaccgacgacaacaaccccgac 220 Query: 156 ggctcctgccactaccacccctccgga 182 ||||||||||| ||||||||||||||| Sbjct: 221 ggctcctgccaataccacccctccgga 247 Score = 93.7 bits (47), Expect = 1e-15 Identities = 74/83 (89%) Strand = Plus / Plus Query: 262 cctatatttcatgacggcatgaaagagtggagctgttgcaagcaaagaagccacgatttt 321 ||||| |||||||| ||||||||| ||||||| || || ||||||| |||||| |||||| Sbjct: 248 cctatgtttcatgatggcatgaaacagtggagttgctgtaagcaaaaaagccatgatttt 307 Query: 322 agcttatttttggctattcctgg 344 ||| ||||||||||||||||||| Sbjct: 308 agcctatttttggctattcctgg 330 >dbj|AK111881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050A01, full insert sequence Length = 1125 Score = 398 bits (201), Expect = e-107 Identities = 399/465 (85%) Strand = Plus / Plus Query: 430 aagcatacaactgaaaaaccagtcacaaaggctgtttctgctaaccctccaaaggcagct 489 ||||| |||||||| |||||| ||||||| || ||| || |||| || ||||||||| | Sbjct: 334 aagcacacaactgagaaaccaatcacaaaagcagttcctactaaaccatcaaaggcagtt 393 Query: 490 ccaatccagtcttctaagcagggtgtgggaactgatgcctgctcaagatgctgtcagggt 549 ||| ||||| |||| |||||| |||||||| |||| | |||||||| ||| |||| ||| Sbjct: 394 ccagtccagacttcgaagcagagtgtgggagctgacacttgctcaaggtgccgtcaaggt 453 Query: 550 ttcttttgctctgaccatggatcacagcccaaggcacaaaaaccagctgctaccaatggt 609 |||||||||||||||||||||||||| ||||||||||||| |||| | ||||||| || | Sbjct: 454 ttcttttgctctgaccatggatcacaacccaaggcacaaataccaaccgctaccagtgat 513 Query: 610 acaaacatggaacctgttgagaaaccctcagttccaccacccaagaaaaaaattgatctg 669 || ||||||| |||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 514 actaacatggtacctgttgagaagcctgcagttccaccaccaaagaaaaaaattgatctg 573 Query: 670 aatgagccaaggatttgcaagaacaaaggatgcggtaaaacttacaaggaaaaggataac 729 | |||||| ||| |||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 574 agtgagcctagggtttgtaagaacaaaggatgtggtaaaacctacaaggagaaggataat 633 Query: 730 catgatgctgcatgccaatatcatccaggtccagcagttttccatgataggatgagaggg 789 ||||||| |||||| | || |||||||| || |||||||| | || ||||| |||||| Sbjct: 634 catgatgaagcatgcgattaccatccaggacctgcagtttttcgcgacaggattagaggg 693 Query: 790 tggaaatgctgtgatattcatgtcaaggagtttgatgagtttatggagatacctccatgc 849 |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||| Sbjct: 694 tggaaatgttgtgatattcatgtcaaggaatttgatgaatttatggagatccctccgtgc 753 Query: 850 acaaaagggtggcacaacgctgatgctgcttgaattgacaccatg 894 ||||| || |||||||| |||||||| || |||||| ||||||| Sbjct: 754 acaaagggttggcacaatgctgatgccgcatgaattttcaccatg 798 Score = 117 bits (59), Expect = 1e-22 Identities = 80/87 (91%) Strand = Plus / Plus Query: 96 ccggtgcggtgccagcggattggctgcgacgccatgttcactgaagacgacaaccccgac 155 |||| ||||||||||||||| ||||||||||||| |||||| || ||| ||||||||||| Sbjct: 151 ccggcgcggtgccagcggataggctgcgacgccacgttcaccgacgacaacaaccccgac 210 Query: 156 ggctcctgccactaccacccctccgga 182 ||||||||||| ||||||||||||||| Sbjct: 211 ggctcctgccaataccacccctccgga 237 Score = 93.7 bits (47), Expect = 1e-15 Identities = 74/83 (89%) Strand = Plus / Plus Query: 262 cctatatttcatgacggcatgaaagagtggagctgttgcaagcaaagaagccacgatttt 321 ||||| |||||||| ||||||||| ||||||| || || ||||||| |||||| |||||| Sbjct: 238 cctatgtttcatgatggcatgaaacagtggagttgctgtaagcaaaaaagccatgatttt 297 Query: 322 agcttatttttggctattcctgg 344 ||| ||||||||||||||||||| Sbjct: 298 agcctatttttggctattcctgg 320 >gb|AF192261.1|AF192261 Hordeum vulgare Rar1 (Rar1) mRNA, complete cds Length = 1054 Score = 383 bits (193), Expect = e-102 Identities = 351/403 (87%), Gaps = 3/403 (0%) Strand = Plus / Plus Query: 478 ccaaaggcagctccaatccagtcttctaagcagggtgtgggaactgatgcctgctcaaga 537 |||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 382 ccaaagtcagctccagtccagtcttctaagcagggtgtggaaactgaggcctgctcaagg 441 Query: 538 tgctgtcagggtttcttttgctctgaccatggatcacagcccaaggcacaaaaaccagct 597 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 442 tgccgtcagggtttcttttgttctgaccatggatcacagcccaaggcacaaaaaccagtt 501 Query: 598 gctaccaatggtacaaacatggaacctgttgagaaaccctcagttccaccacccaagaaa 657 ||| ||||||||||| | |||| |||| ||||| ||||||||||| ||||||||| Sbjct: 502 gctgtaaatggtacaaatacggaatctgtccagaaatcctcagttccagagcccaagaaa 561 Query: 658 aaaattg---atctgaatgagccaaggatttgcaagaacaaaggatgcggtaaaacttac 714 || ||| || | ||||| || ||| |||| ||||| |||||||| || ||||| ||| Sbjct: 562 aaggttgttgatataaatgaacctagggtttgtaagaataaaggatgtggcaaaacgtac 621 Query: 715 aaggaaaaggataaccatgatgctgcatgccaatatcatccaggtccagcagttttccat 774 ||||| |||||||||||||||||||||||| | || ||||||||||| |||||||||||| Sbjct: 622 aaggagaaggataaccatgatgctgcatgcgattaccatccaggtcctgcagttttccat 681 Query: 775 gataggatgagagggtggaaatgctgtgatattcatgtcaaggagtttgatgagtttatg 834 || || | ||||||||||| || |||||| | ||||||||||||||||| || |||||| Sbjct: 682 gacagaaatagagggtggaagtgttgtgatgtccatgtcaaggagtttgacgaatttatg 741 Query: 835 gagatacctccatgcacaaaagggtggcacaacgctgatgctg 877 |||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 742 gagatacctccatgcacaaaggggtggcacaatgctgatgctg 784 Score = 141 bits (71), Expect = 7e-30 Identities = 77/79 (97%) Strand = Plus / Plus Query: 268 tttcatgacggcatgaaagagtggagctgttgcaagcaaagaagccacgattttagctta 327 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 229 tttcatgatggcatgaaagagtggagctgttgcaagcaaagaagccatgattttagctta 288 Query: 328 tttttggctattcctggat 346 ||||||||||||||||||| Sbjct: 289 tttttggctattcctggat 307 Score = 129 bits (65), Expect = 3e-26 Identities = 121/140 (86%), Gaps = 6/140 (4%) Strand = Plus / Plus Query: 49 gcatcgcgatgtcgacggaggcggagaagagcggcggggcgcccgccccgg------tgc 102 |||||||||||||| ||||| |||||| ||||| || |||||||| || | ||| Sbjct: 83 gcatcgcgatgtcggcggagacggagaggagcgccgccgcgcccgcgcccgcgcccatgc 142 Query: 103 ggtgccagcggattggctgcgacgccatgttcactgaagacgacaaccccgacggctcct 162 |||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||| Sbjct: 143 ggtgccagcgcataggctgcgacgccatgttcaccgacgacgacaaccccgatggctcct 202 Query: 163 gccactaccacccctccgga 182 |||||||||||||||||||| Sbjct: 203 gccactaccacccctccgga 222 >gb|EF202841.1| Triticum aestivum RAR1 (RAR1) mRNA, RAR1-1 allele, complete cds Length = 696 Score = 339 bits (171), Expect = 2e-89 Identities = 338/393 (86%), Gaps = 3/393 (0%) Strand = Plus / Plus Query: 486 agctccaatccagtcttctaagcagggtgtgggaactgatgcctgctcaagatgctgtca 545 |||||||||||||||||||||||||||||||| ||| || |||||||| || ||| |||| Sbjct: 297 agctccaatccagtcttctaagcagggtgtggaaaccgaggcctgctccaggtgccgtca 356 Query: 546 gggtttcttttgctctgaccatggatcacagcccaaggcacaaaaaccagctgctaccaa 605 ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || Sbjct: 357 gggtttcttttgctccgaccatggatcacagcccaaggcacaaaaaccagttgctgtaaa 416 Query: 606 tggtacaaacatggaacctgttgagaaaccctcagttccaccacccaagaaaaaaattg- 664 ||||||||| | ||||||||| || ||| ||||||||||| |||| ||||||| ||| Sbjct: 417 tggtacaaatacggaacctgtcgaaaaatgctcagttccacagcccaggaaaaaagttgt 476 Query: 665 --atctgaatgagccaaggatttgcaagaacaaaggatgcggtaaaacttacaaggaaaa 722 || | |||||||| ||| |||| ||||| |||||||| |||||||| ||||| || || Sbjct: 477 taatataaatgagcctagggtttgtaagaataaaggatgtggtaaaacctacaaagagaa 536 Query: 723 ggataaccatgatgctgcatgccaatatcatccaggtccagcagttttccatgataggat 782 |||||||||||||||||||| |||| ||||||||||| || ||||||||||| |||| Sbjct: 537 agataaccatgatgctgcatgtgaataccatccaggtcctgcggttttccatgacaggaa 596 Query: 783 gagagggtggaaatgctgtgatattcatgtcaaggagtttgatgagtttatggagatacc 842 | ||||||||| || || ||| | || |||||||||||||| || |||||||||||||| Sbjct: 597 tacagggtggaagtgttgcgatgtccacgtcaaggagtttgacgaatttatggagatacc 656 Query: 843 tccatgcacaaaagggtggcacaacgctgatgc 875 |||||||||||| || |||||||| |||||||| Sbjct: 657 tccatgcacaaagggctggcacaatgctgatgc 689 Score = 137 bits (69), Expect = 1e-28 Identities = 81/85 (95%) Strand = Plus / Plus Query: 262 cctatatttcatgacggcatgaaagagtggagctgttgcaagcaaagaagccacgatttt 321 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 133 cctatgtttcatgatggcatgaaagagtggagctgttgcaagcaaagaagccatgatttt 192 Query: 322 agcttatttttggctattcctggat 346 ||||||||||| ||||||||||||| Sbjct: 193 agcttatttttagctattcctggat 217 Score = 135 bits (68), Expect = 4e-28 Identities = 89/96 (92%) Strand = Plus / Plus Query: 87 gcgcccgccccggtgcggtgccagcggattggctgcgacgccatgttcactgaagacgac 146 |||||||| || ||||||||||||| || |||||||||||||||||||| || |||||| Sbjct: 37 gcgcccgcgcccatgcggtgccagcgaataggctgcgacgccatgttcaccgacgacgac 96 Query: 147 aaccccgacggctcctgccactaccacccctccgga 182 |||||||||||||||||||||||||||||||||||| Sbjct: 97 aaccccgacggctcctgccactaccacccctccgga 132