BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf025a07 (1231 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001066270.1| Oryza sativa (japonica cultivar-group) Os07g... 525 e-145 dbj|AK073959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 525 e-145 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 232 3e-57 dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 232 3e-57 gb|EF450752.1| Brachypodium sylvaticum isolate 3-2G2 microsatell... 186 1e-43 >ref|NM_001066270.1| Oryza sativa (japonica cultivar-group) Os07g0506700 (Os07g0506700) mRNA, complete cds Length = 2424 Score = 525 bits (265), Expect = e-145 Identities = 466/533 (87%) Strand = Plus / Plus Query: 438 ttcagaaaacaggcgccagactcatccatgttaggtacatttcttgcttgtacggagaag 497 ||||||| ||| |||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 413 ttcagaagacatgcgctggactcatccatgttaggcacatttcttgcttgtacagagaag 472 Query: 498 ggcaaagcatgggtgaaatctgtcgcaaaggaaaacacagcttctgacttggatgtcagt 557 || ||||||| || || ||||||||||||||||| || | || ||| ||| ||| | Sbjct: 473 gggaaagcatatgtcaagtctgtcgcaaaggaaaatgcatcctcggacatggctgttggg 532 Query: 558 cccgcaagcacatgggatgtgtgcagtgggggtaaaatgcagttttcttcggtggatgct 617 || ||||| ||||||||||| ||| | ||||| | |||| |||||||| ||||||||| Sbjct: 533 ccatcaagctcatgggatgtgagcaattcgggtacagtgcaattttcttcagtggatgct 592 Query: 618 ggcgaaagctatgtgatgttcggagggaaaggtatagaagtgaacttgtgggatatcgca 677 || |||||||| | |||||||||||||||||| |||||||| || |||||||||||| || Sbjct: 593 ggtgaaagctacgcgatgttcggagggaaaggaatagaagtcaatttgtgggatatcaca 652 Query: 678 tcttgtaataagatatggtctgctaaatctccccgggctaacagccttggtatatttact 737 ||||||| ||||||||||||||| || ||||| || | ||||| ||| ||||| ||| Sbjct: 653 tcttgtagtaagatatggtctgccaagtctcctcgaggcaacagtcttcagatattcact 712 Query: 738 ccaccttggttcactgctggaacctttttgtgcaaggatgatcatcgtaaaattgtggcc 797 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct: 713 gcaccttggttcactgctggaacttttttgtgcaaggatgaccatcgtaaaattgtagcc 772 Query: 798 tgtaccaataatcatcaggttcgcttatacgatactgcttcccaaagaagacctgttatt 857 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 773 tgcacaaataatcatcaggttcgcttatatgacactgcttcccaaagaaggcctgtaatt 832 Query: 858 tcagttgattttagggagtcaccaatcaaggcagttgctgaggatccaaatgggcatact 917 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || Sbjct: 833 tcagttgattttagggagtcaccaatcaaggcagttgctgaggacccaaatggacatgct 892 Query: 918 gtctacattgggacaggaacaggggacctcgcttcctttgacatgagaacagg 970 ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 893 gtctacattggtacaggaagaggggaccttgcttcctttgacatgagaacagg 945 Score = 343 bits (173), Expect = 1e-90 Identities = 236/257 (91%) Strand = Plus / Plus Query: 99 atgccgcggacgaccgcggtggagagccccggctgcccgccgctccgcgccctcaccact 158 ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 68 atgccgcggacgagcgtggtcgagagccccggctgcccgccgctccgggccctcaccacc 127 Query: 159 gacgtcctcggcctcgtcaaagtcgtcgaggcccgcgcgaagccggcgggcgtcgccaag 218 ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 128 gacatcctcggcctcatcaaagtcgtggaggcccgcacgaagccggcgggcgtcgccaag 187 Query: 219 gtcgtcgaaacgtggggcacgcccgacgcctcccgggctgtcctcgccgcctctctcgcc 278 |||||||| ||||||||| |||||||||| |||| || |||||||||||||| |||||| Sbjct: 188 gtcgtcgagacgtggggcgcgcccgacgcgccccgcgccgtcctcgccgcctcgctcgcc 247 Query: 279 gaccgtgccgtcgacccggttttggccgtggcgaggaagaacggcgtggttgagctgctc 338 ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 248 gaccgcgccgtcgaccccgttttggccgtggcgcggaagaacggcgtggttgagctgctg 307 Query: 339 aatcccctgaatgggga 355 ||||| ||||||||||| Sbjct: 308 aatccactgaatgggga 324 Score = 280 bits (141), Expect = 1e-71 Identities = 199/216 (92%), Gaps = 3/216 (1%) Strand = Plus / Plus Query: 992 tggtaaatgcagtggaagtattagatcgatagttagacatccagagctacctttgatagc 1051 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1796 tggtaaatgcagtggaagtattagatctatagttagacatccagagctacctttgatagc 1855 Query: 1052 atcttgtggattggacagctacttgcgcatctgggacacaaatacaaggcaggctctttc 1111 |||||||||| ||||||| ||||| ||||||||||||||||||||||||||| || || Sbjct: 1856 atcttgtggactggacagttacttacgcatctgggacacaaatacaaggcagctgctctc 1915 Query: 1112 tgcggtcttcctcaagcagcatctcacagctgtggttatcgattcacatttctcagctga 1171 ||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 1916 tgcggtcttcctcaagcagcacctgacagctgtggttattgattcacatttctccactga 1975 Query: 1172 agaa-tc--tgagactaaatccaagcagccagatcc 1204 |||| || |||||||||||||||||||||||||| Sbjct: 1976 agaactcgaggagactaaatccaagcagccagatcc 2011 >dbj|AK073959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L22, full insert sequence Length = 2425 Score = 525 bits (265), Expect = e-145 Identities = 466/533 (87%) Strand = Plus / Plus Query: 438 ttcagaaaacaggcgccagactcatccatgttaggtacatttcttgcttgtacggagaag 497 ||||||| ||| |||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 414 ttcagaagacatgcgctggactcatccatgttaggcacatttcttgcttgtacagagaag 473 Query: 498 ggcaaagcatgggtgaaatctgtcgcaaaggaaaacacagcttctgacttggatgtcagt 557 || ||||||| || || ||||||||||||||||| || | || ||| ||| ||| | Sbjct: 474 gggaaagcatatgtcaagtctgtcgcaaaggaaaatgcatcctcggacatggctgttggg 533 Query: 558 cccgcaagcacatgggatgtgtgcagtgggggtaaaatgcagttttcttcggtggatgct 617 || ||||| ||||||||||| ||| | ||||| | |||| |||||||| ||||||||| Sbjct: 534 ccatcaagctcatgggatgtgagcaattcgggtacagtgcaattttcttcagtggatgct 593 Query: 618 ggcgaaagctatgtgatgttcggagggaaaggtatagaagtgaacttgtgggatatcgca 677 || |||||||| | |||||||||||||||||| |||||||| || |||||||||||| || Sbjct: 594 ggtgaaagctacgcgatgttcggagggaaaggaatagaagtcaatttgtgggatatcaca 653 Query: 678 tcttgtaataagatatggtctgctaaatctccccgggctaacagccttggtatatttact 737 ||||||| ||||||||||||||| || ||||| || | ||||| ||| ||||| ||| Sbjct: 654 tcttgtagtaagatatggtctgccaagtctcctcgaggcaacagtcttcagatattcact 713 Query: 738 ccaccttggttcactgctggaacctttttgtgcaaggatgatcatcgtaaaattgtggcc 797 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct: 714 gcaccttggttcactgctggaacttttttgtgcaaggatgaccatcgtaaaattgtagcc 773 Query: 798 tgtaccaataatcatcaggttcgcttatacgatactgcttcccaaagaagacctgttatt 857 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 774 tgcacaaataatcatcaggttcgcttatatgacactgcttcccaaagaaggcctgtaatt 833 Query: 858 tcagttgattttagggagtcaccaatcaaggcagttgctgaggatccaaatgggcatact 917 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || Sbjct: 834 tcagttgattttagggagtcaccaatcaaggcagttgctgaggacccaaatggacatgct 893 Query: 918 gtctacattgggacaggaacaggggacctcgcttcctttgacatgagaacagg 970 ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 894 gtctacattggtacaggaagaggggaccttgcttcctttgacatgagaacagg 946 Score = 343 bits (173), Expect = 1e-90 Identities = 236/257 (91%) Strand = Plus / Plus Query: 99 atgccgcggacgaccgcggtggagagccccggctgcccgccgctccgcgccctcaccact 158 ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 69 atgccgcggacgagcgtggtcgagagccccggctgcccgccgctccgggccctcaccacc 128 Query: 159 gacgtcctcggcctcgtcaaagtcgtcgaggcccgcgcgaagccggcgggcgtcgccaag 218 ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 129 gacatcctcggcctcatcaaagtcgtggaggcccgcacgaagccggcgggcgtcgccaag 188 Query: 219 gtcgtcgaaacgtggggcacgcccgacgcctcccgggctgtcctcgccgcctctctcgcc 278 |||||||| ||||||||| |||||||||| |||| || |||||||||||||| |||||| Sbjct: 189 gtcgtcgagacgtggggcgcgcccgacgcgccccgcgccgtcctcgccgcctcgctcgcc 248 Query: 279 gaccgtgccgtcgacccggttttggccgtggcgaggaagaacggcgtggttgagctgctc 338 ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 249 gaccgcgccgtcgaccccgttttggccgtggcgcggaagaacggcgtggttgagctgctg 308 Query: 339 aatcccctgaatgggga 355 ||||| ||||||||||| Sbjct: 309 aatccactgaatgggga 325 Score = 280 bits (141), Expect = 1e-71 Identities = 199/216 (92%), Gaps = 3/216 (1%) Strand = Plus / Plus Query: 992 tggtaaatgcagtggaagtattagatcgatagttagacatccagagctacctttgatagc 1051 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1797 tggtaaatgcagtggaagtattagatctatagttagacatccagagctacctttgatagc 1856 Query: 1052 atcttgtggattggacagctacttgcgcatctgggacacaaatacaaggcaggctctttc 1111 |||||||||| ||||||| ||||| ||||||||||||||||||||||||||| || || Sbjct: 1857 atcttgtggactggacagttacttacgcatctgggacacaaatacaaggcagctgctctc 1916 Query: 1112 tgcggtcttcctcaagcagcatctcacagctgtggttatcgattcacatttctcagctga 1171 ||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 1917 tgcggtcttcctcaagcagcacctgacagctgtggttattgattcacatttctccactga 1976 Query: 1172 agaa-tc--tgagactaaatccaagcagccagatcc 1204 |||| || |||||||||||||||||||||||||| Sbjct: 1977 agaactcgaggagactaaatccaagcagccagatcc 2012 >dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 232 bits (117), Expect = 3e-57 Identities = 147/157 (93%) Strand = Plus / Minus Query: 814 aggttcgcttatacgatactgcttcccaaagaagacctgttatttcagttgattttaggg 873 ||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 19180601 aggttcgcttatatgacactgcttcccaaagaaggcctgtaatttcagttgattttaggg 19180542 Query: 874 agtcaccaatcaaggcagttgctgaggatccaaatgggcatactgtctacattgggacag 933 |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| Sbjct: 19180541 agtcaccaatcaaggcagttgctgaggacccaaatggacatgctgtctacattggtacag 19180482 Query: 934 gaacaggggacctcgcttcctttgacatgagaacagg 970 ||| ||||||||| ||||||||||||||||||||||| Sbjct: 19180481 gaagaggggaccttgcttcctttgacatgagaacagg 19180445 Score = 153 bits (77), Expect = 2e-33 Identities = 107/117 (91%) Strand = Plus / Minus Query: 179 agtcgtcgaggcccgcgcgaagccggcgggcgtcgccaaggtcgtcgaaacgtggggcac 238 |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 19182152 agtcgtggaggcccgcacgaagccggcgggcgtcgccaaggtcgtcgagacgtggggcgc 19182093 Query: 239 gcccgacgcctcccgggctgtcctcgccgcctctctcgccgaccgtgccgtcgaccc 295 ||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||| Sbjct: 19182092 gcccgacgcgccccgcgccgtcctcgccgcctcgctcgccgaccgcgccgtcgaccc 19182036 Score = 129 bits (65), Expect = 3e-26 Identities = 68/69 (98%) Strand = Plus / Minus Query: 992 tggtaaatgcagtggaagtattagatcgatagttagacatccagagctacctttgatagc 1051 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 19179594 tggtaaatgcagtggaagtattagatctatagttagacatccagagctacctttgatagc 19179535 Query: 1052 atcttgtgg 1060 ||||||||| Sbjct: 19179534 atcttgtgg 19179526 Score = 121 bits (61), Expect = 7e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 729 atatttactccaccttggttcactgctggaacctttttgtgcaaggatgatcatcgtaaa 788 ||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 19180997 atattcactgcaccttggttcactgctggaacttttttgtgcaaggatgaccatcgtaaa 19180938 Query: 789 attgtggcctgtaccaataatcatcaggt 817 ||||| ||||| || |||||||||||||| Sbjct: 19180937 attgtagcctgcacaaataatcatcaggt 19180909 Score = 107 bits (54), Expect = 1e-19 Identities = 75/82 (91%) Strand = Plus / Minus Query: 99 atgccgcggacgaccgcggtggagagccccggctgcccgccgctccgcgccctcaccact 158 ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 19182347 atgccgcggacgagcgtggtcgagagccccggctgcccgccgctccgggccctcaccacc 19182288 Query: 159 gacgtcctcggcctcgtcaaag 180 ||| ||||||||||| |||||| Sbjct: 19182287 gacatcctcggcctcatcaaag 19182266 Score = 77.8 bits (39), Expect = 1e-10 Identities = 48/51 (94%) Strand = Plus / Minus Query: 1115 ggtcttcctcaagcagcatctcacagctgtggttatcgattcacatttctc 1165 |||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 19178848 ggtcttcctcaagcagcacctgacagctgtggttattgattcacatttctc 19178798 >dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 232 bits (117), Expect = 3e-57 Identities = 147/157 (93%) Strand = Plus / Minus Query: 814 aggttcgcttatacgatactgcttcccaaagaagacctgttatttcagttgattttaggg 873 ||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 103996 aggttcgcttatatgacactgcttcccaaagaaggcctgtaatttcagttgattttaggg 103937 Query: 874 agtcaccaatcaaggcagttgctgaggatccaaatgggcatactgtctacattgggacag 933 |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| Sbjct: 103936 agtcaccaatcaaggcagttgctgaggacccaaatggacatgctgtctacattggtacag 103877 Query: 934 gaacaggggacctcgcttcctttgacatgagaacagg 970 ||| ||||||||| ||||||||||||||||||||||| Sbjct: 103876 gaagaggggaccttgcttcctttgacatgagaacagg 103840 Score = 153 bits (77), Expect = 2e-33 Identities = 107/117 (91%) Strand = Plus / Minus Query: 179 agtcgtcgaggcccgcgcgaagccggcgggcgtcgccaaggtcgtcgaaacgtggggcac 238 |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 105547 agtcgtggaggcccgcacgaagccggcgggcgtcgccaaggtcgtcgagacgtggggcgc 105488 Query: 239 gcccgacgcctcccgggctgtcctcgccgcctctctcgccgaccgtgccgtcgaccc 295 ||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||| Sbjct: 105487 gcccgacgcgccccgcgccgtcctcgccgcctcgctcgccgaccgcgccgtcgaccc 105431 Score = 129 bits (65), Expect = 3e-26 Identities = 68/69 (98%) Strand = Plus / Minus Query: 992 tggtaaatgcagtggaagtattagatcgatagttagacatccagagctacctttgatagc 1051 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 102989 tggtaaatgcagtggaagtattagatctatagttagacatccagagctacctttgatagc 102930 Query: 1052 atcttgtgg 1060 ||||||||| Sbjct: 102929 atcttgtgg 102921 Score = 121 bits (61), Expect = 7e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 729 atatttactccaccttggttcactgctggaacctttttgtgcaaggatgatcatcgtaaa 788 ||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 104392 atattcactgcaccttggttcactgctggaacttttttgtgcaaggatgaccatcgtaaa 104333 Query: 789 attgtggcctgtaccaataatcatcaggt 817 ||||| ||||| || |||||||||||||| Sbjct: 104332 attgtagcctgcacaaataatcatcaggt 104304 Score = 107 bits (54), Expect = 1e-19 Identities = 75/82 (91%) Strand = Plus / Minus Query: 99 atgccgcggacgaccgcggtggagagccccggctgcccgccgctccgcgccctcaccact 158 ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 105742 atgccgcggacgagcgtggtcgagagccccggctgcccgccgctccgggccctcaccacc 105683 Query: 159 gacgtcctcggcctcgtcaaag 180 ||| ||||||||||| |||||| Sbjct: 105682 gacatcctcggcctcatcaaag 105661 Score = 77.8 bits (39), Expect = 1e-10 Identities = 48/51 (94%) Strand = Plus / Minus Query: 1115 ggtcttcctcaagcagcatctcacagctgtggttatcgattcacatttctc 1165 |||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 102243 ggtcttcctcaagcagcacctgacagctgtggttattgattcacatttctc 102193 >gb|EF450752.1| Brachypodium sylvaticum isolate 3-2G2 microsatellite sequence Length = 543 Score = 186 bits (94), Expect = 1e-43 Identities = 133/146 (91%) Strand = Plus / Minus Query: 825 tacgatactgcttcccaaagaagacctgttatttcagttgattttagggagtcaccaatc 884 ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 308 tacgatactgcctcacaaagaagacctgtcatttcagttgattttagggagtcaccaatc 249 Query: 885 aaggcagttgctgaggatccaaatgggcatactgtctacattgggacaggaacaggggac 944 |||||||||| |||||||||| | || ||||| |||| |||||||||||||| || || Sbjct: 248 aaggcagttgttgaggatccagacggacataccatctatattgggacaggaacgggagat 189 Query: 945 ctcgcttcctttgacatgagaacagg 970 |||||||||||||||||||||||||| Sbjct: 188 ctcgcttcctttgacatgagaacagg 163