BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf003o22 (1002 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001060900.1| Oryza sativa (japonica cultivar-group) Os04g... 811 0.0 dbj|AK102150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 803 0.0 emb|AM502859.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 603 e-169 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 184 5e-43 emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 184 5e-43 >ref|NM_001060900.1| Oryza sativa (japonica cultivar-group) Os04g0692100 (Os04g0692100) mRNA, complete cds Length = 1126 Score = 811 bits (409), Expect = 0.0 Identities = 651/731 (89%), Gaps = 3/731 (0%) Strand = Plus / Plus Query: 40 tcgtccaagctgcagctgccggcggacgacagcgtcctcctgctcgtcacgcactccaac 99 |||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| Sbjct: 76 tcgtccaagctgcatctcccggctgacgacagcgtcctcctcctcctcacgcactccaac 135 Query: 100 ctcaccaccttctcctccgacatccgcgtctcgcagcagaccaccgtcgaggccctcaag 159 ||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||| Sbjct: 136 ctctccaccttctcctccgacatccgcgtctccaagcagacctccgtcgaggcgctcaag 195 Query: 160 gagaagctctggaggaagaccggcaccgccgtcgcctccatgcgcctcgagctccgcgac 219 || ||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||| Sbjct: 196 gacaagctctggaggaagaccggcacatccgttgccttcatgcgcctccagctccgcgac 255 Query: 220 gataccggcgccaagatcgccgacctcgacctcgacgccgcgcccctcgcctcctactcc 279 || |||||||||| ||||||||||||||||| ||| | ||| ||||||||||||||||| Sbjct: 256 gacaccggcgccatgatcgccgacctcgaccacgatgacgccaccctcgcctcctactcc 315 Query: 280 ccctacaacgggtaccggctgcatattatcgatcttgatccttcgtcggtgacctctggt 339 || ||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||||||| Sbjct: 316 ccatacgacgggtaccgtctgcacattatcgatctcgatccttcgtcaatcacctctggt 375 Query: 340 ggttggttggaagatacttcacttgtcgaaaagtacacaatttcagatgaggcgtacaat 399 ||||||||||| |||||||| ||||| ||||||||||| || |||||||| || || ||| Sbjct: 376 ggttggttggaggatacttcccttgttgaaaagtacaccatctcagatgaagcatataat 435 Query: 400 aagcttgacactaactttcgaaaattcaaagaaaaaatggtgtcgaaaaaccctgcatca 459 || ||||| || ||||||||||||||||||||||| |||| | ||||||||| | ||| Sbjct: 436 aatcttgatacaaactttcgaaaattcaaagaaaagatggcctttaaaaaccctacgtca 495 Query: 460 gatgata---aaaaacaatcagacaagcacaaggaggaattgtgtgccaacatcaaggtt 516 ||||||| || ||||||| |||||||| | |||||||||||| |||||||||||||| Sbjct: 496 gatgataaacaacaacaatctgacaagcatatggaggaattgtgcgccaacatcaaggtg 555 Query: 517 ggagatagatgtgaagttgagccaggtgccaagaggggcactgtaaagtttgttggcaga 576 || |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 556 ggtgatagatgtgaagtcgagccaggtgctaagaggggtactgtaaaatttgttggcaga 615 Query: 577 gctgaagcgcttggatgtggattttgggttggagtgcaatatgatgagccacttggaaag 636 |||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 616 gctgaagctcttggacgtggattttgggttggagtccaatatgatgaaccacttggaaag 675 Query: 637 cacgatggcatggtgaaaggcattcgcttctttgagtgccctcaagggcatggagcaatt 696 || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| Sbjct: 676 catgatggcatggtgaaaggcattcgctttttcgagtgtcctcaagggcatggagctatt 735 Query: 697 gttaggccagagaaagtaaaggttggcgccttcccagagagagacccatttgaagaagag 756 ||||||||||||||||||||||| || | || ||||||||| ||||| |||||||| ||| Sbjct: 736 gttaggccagagaaagtaaaggtcggggactacccagagagggacccttttgaagaggag 795 Query: 757 gagatataggc 767 ||||| ||||| Sbjct: 796 gagatctaggc 806 >dbj|AK102150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086D17, full insert sequence Length = 1128 Score = 803 bits (405), Expect = 0.0 Identities = 650/731 (88%), Gaps = 3/731 (0%) Strand = Plus / Plus Query: 40 tcgtccaagctgcagctgccggcggacgacagcgtcctcctgctcgtcacgcactccaac 99 |||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| Sbjct: 78 tcgtccaagctgcatctcccggctgacgacagcgtcctcctcctcctcacgcactccaac 137 Query: 100 ctcaccaccttctcctccgacatccgcgtctcgcagcagaccaccgtcgaggccctcaag 159 ||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||| Sbjct: 138 ctctccaccttctcctccgacatccgcgtctccaagcagacctccgtcgaggcgctcaag 197 Query: 160 gagaagctctggaggaagaccggcaccgccgtcgcctccatgcgcctcgagctccgcgac 219 || ||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||| Sbjct: 198 gacaagctctggaggaagaccggcacatccgttgccttcatgcgcctccagctccgcgac 257 Query: 220 gataccggcgccaagatcgccgacctcgacctcgacgccgcgcccctcgcctcctactcc 279 || |||||||||| ||||||||||||||||| ||| | ||| ||||||||||||||||| Sbjct: 258 gacaccggcgccatgatcgccgacctcgaccacgatgacgccaccctcgcctcctactcc 317 Query: 280 ccctacaacgggtaccggctgcatattatcgatcttgatccttcgtcggtgacctctggt 339 || ||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||||||| Sbjct: 318 ccatacgacgggtaccgtctgcacattatcgatctcgatccttcgtcaatcacctctggt 377 Query: 340 ggttggttggaagatacttcacttgtcgaaaagtacacaatttcagatgaggcgtacaat 399 ||||||||||| |||||||| ||||| ||||||||||| || |||||||| || || ||| Sbjct: 378 ggttggttggaggatacttcccttgttgaaaagtacaccatctcagatgaagcatataat 437 Query: 400 aagcttgacactaactttcgaaaattcaaagaaaaaatggtgtcgaaaaaccctgcatca 459 || ||||| || ||||||||||||||||||||||| |||| | ||||||||| | ||| Sbjct: 438 aatcttgatacaaactttcgaaaattcaaagaaaagatggcctttaaaaaccctacgtca 497 Query: 460 gatgata---aaaaacaatcagacaagcacaaggaggaattgtgtgccaacatcaaggtt 516 ||||||| || ||||||| |||||||| | |||||||||||| ||| |||||||||| Sbjct: 498 gatgataaacaacaacaatctgacaagcatatggaggaattgtgcgccgacatcaaggtg 557 Query: 517 ggagatagatgtgaagttgagccaggtgccaagaggggcactgtaaagtttgttggcaga 576 || |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 558 ggtgatagatgtgaagtcgagccaggtgctaagaggggtactgtaaaatttgttggcaga 617 Query: 577 gctgaagcgcttggatgtggattttgggttggagtgcaatatgatgagccacttggaaag 636 |||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 618 gctgaagctcttggacgtggattttgggttggagtccaatatgatgaaccacttggaaag 677 Query: 637 cacgatggcatggtgaaaggcattcgcttctttgagtgccctcaagggcatggagcaatt 696 || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| Sbjct: 678 catgatggcatggtgaaaggcattcgctttttcgagtgtcctcaagggcatggagctatt 737 Query: 697 gttaggccagagaaagtaaaggttggcgccttcccagagagagacccatttgaagaagag 756 ||||||||||||||||||||||| || | || ||||||||| ||||| |||||||| ||| Sbjct: 738 gttaggccagagaaagtaaaggtcggggactacccagagagggacccttttgaagaggag 797 Query: 757 gagatataggc 767 ||||| ||||| Sbjct: 798 gagatctaggc 808 >emb|AM502859.1| Hordeum vulgare subsp. vulgare partial mRNA for tubulin folding cofactor B (tfc B gene) Length = 987 Score = 603 bits (304), Expect = e-169 Identities = 577/666 (86%), Gaps = 4/666 (0%) Strand = Plus / Plus Query: 79 ctgctcgtcacgcactccaacctcaccaccttctcctccgacatccgcgtctcgcagcag 138 |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 13 ctgcgcgtcacgcactccaacctcgccaccttcgcctccgacatccgcgtctcgcagcag 72 Query: 139 accaccgtcgaggccctcaaggagaagctctggaggaagacc-ggcaccgccgtcgcctc 197 || ||||| ||||| |||||||||||||| |||| |||||| ||||| ||||| | ||| Sbjct: 73 acgaccgtggaggcgctcaaggagaagctgtggaagaagacatggcacggccgtgggctc 132 Query: 198 catgcgcctcgagctccgcgacgataccggcgccaagatcgccgacctcgacctcgacgc 257 |||||||||||||| ||| ||||| ||||||||| | ||||||||||||||| |||||| Sbjct: 133 catgcgcctcgagcgccgggacgaggccggcgccagggtcgccgacctcgaccgcgacgc 192 Query: 258 cgcgcccctcgcctcctactccccctacaacgggtaccggctgcatattatcgatcttga 317 ||||||||||||| ||||||||| |||| |||||||||||||||| || ||| | || || Sbjct: 193 cgcgcccctcgccgcctactcccactacgacgggtaccggctgcacatcatcaacctcga 252 Query: 318 tccttcgtcggtgacctctggtggttggttggaagatacttcacttgtcgaaaagtacac 377 || || ||||||||||| || || ||| ||||||| || || || ||||| |||||||| Sbjct: 253 cccctcctcggtgacctccggcgggtggctggaagacacctcgctcgtcgagaagtacac 312 Query: 378 aatttcagatgaggcgtacaataagcttgacactaactttcgaaaattcaaagaaaaaat 437 || || || |||||||| | ||||| | ||| ||||| || || |||||||| || || Sbjct: 313 catctcggacgaggcgtatgacaagctcggcacaaacttccggaagttcaaagagaagat 372 Query: 438 ggtgtcgaaaaaccctgcatcagatgataaaaaacaatcagacaagcacaaggaggaatt 497 |||| |||||| | ||| ||| |||||||| || |||||||| || | ||||||||| Sbjct: 373 ggtggcgaaaaccactgtatcggatgataag---cagtcagacaatcagatggaggaatt 429 Query: 498 gtgtgccaacatcaaggttggagatagatgtgaagttgagccaggtgccaagaggggcac 557 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 430 gtgtgccaacatcaaggtgggagatagatgtgaagtcgagccaggtgccaagaggggcac 489 Query: 558 tgtaaagtttgttggcagagctgaagcgcttggatgtggattttgggttggagtgcaata 617 || || || || |||| ||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 490 cgtgaaattcgtcggcaaagctgaagcccttgggcgtggattttgggttggagtgcaata 549 Query: 618 tgatgagccacttggaaagcacgatggcatggtgaaaggcattcgcttctttgagtgccc 677 ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| Sbjct: 550 cgatgagccacttggaaaacacgatggcatggtgaaaggagttcgcttcttcgagtgccc 609 Query: 678 tcaagggcatggagcaattgttaggccagagaaagtaaaggttggcgccttcccagagag 737 |||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||||| Sbjct: 610 tcaagggcatggagcaattgttaggccagagaaagtgaaggttggcgactttccggagag 669 Query: 738 agaccc 743 ||||| Sbjct: 670 ggaccc 675 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 184 bits (93), Expect = 5e-43 Identities = 120/129 (93%) Strand = Plus / Minus Query: 520 gatagatgtgaagttgagccaggtgccaagaggggcactgtaaagtttgttggcagagct 579 |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35459753 gatagatgtgaagtcgagccaggtgctaagaggggtactgtaaaatttgttggcagagct 35459694 Query: 580 gaagcgcttggatgtggattttgggttggagtgcaatatgatgagccacttggaaagcac 639 ||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 35459693 gaagctcttggacgtggattttgggttggagtccaatatgatgaaccacttggaaagcat 35459634 Query: 640 gatggcatg 648 ||||||||| Sbjct: 35459633 gatggcatg 35459625 Score = 178 bits (90), Expect = 3e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 135 gcagaccaccgtcgaggccctcaaggagaagctctggaggaagaccggcaccgccgtcgc 194 ||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| || Sbjct: 35461701 gcagacctccgtcgaggcgctcaaggacaagctctggaggaagaccggcacatccgttgc 35461642 Query: 195 ctccatgcgcctcgagctccgcgacgataccggcgccaagatcgccgacctcgacctcga 254 || |||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||| Sbjct: 35461641 cttcatgcgcctccagctccgcgacgacaccggcgccatgatcgccgacctcgaccacga 35461582 Query: 255 cgccgcgcccctcgcctcctactccccctacaacgggt 292 | ||| ||||||||||||||||||| ||| |||||| Sbjct: 35461581 tgacgccaccctcgcctcctactccccatacgacgggt 35461544 Score = 135 bits (68), Expect = 4e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 40 tcgtccaagctgcagctgccggcggacgacagcgtcctcctgctcgtcacgcactccaac 99 |||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| Sbjct: 35461859 tcgtccaagctgcatctcccggctgacgacagcgtcctcctcctcctcacgcactccaac 35461800 Query: 100 ctcaccaccttctcctccgacatccgcgtctc 131 ||| |||||||||||||||||||||||||||| Sbjct: 35461799 ctctccaccttctcctccgacatccgcgtctc 35461768 Score = 115 bits (58), Expect = 4e-22 Identities = 103/118 (87%) Strand = Plus / Minus Query: 290 ggtaccggctgcatattatcgatcttgatccttcgtcggtgacctctggtggttggttgg 349 ||||||| ||||| ||||||||||| ||||||||||| | ||||||||||||||||||| Sbjct: 35461472 ggtaccgtctgcacattatcgatctcgatccttcgtcaatcacctctggtggttggttgg 35461413 Query: 350 aagatacttcacttgtcgaaaagtacacaatttcagatgaggcgtacaataagcttga 407 | |||||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 35461412 aggatacttcccttgttgaaaagtacaccatctcagatgaagcatataataatcttga 35461355 Score = 111 bits (56), Expect = 6e-21 Identities = 68/72 (94%) Strand = Plus / Minus Query: 648 ggtgaaaggcattcgcttctttgagtgccctcaagggcatggagcaattgttaggccaga 707 |||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| Sbjct: 35458988 ggtgaaaggcattcgctttttcgagtgtcctcaagggcatggagctattgttaggccaga 35458929 Query: 708 gaaagtaaaggt 719 |||||||||||| Sbjct: 35458928 gaaagtaaaggt 35458917 >emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 184 bits (93), Expect = 5e-43 Identities = 120/129 (93%) Strand = Plus / Minus Query: 520 gatagatgtgaagttgagccaggtgccaagaggggcactgtaaagtttgttggcagagct 579 |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84556 gatagatgtgaagtcgagccaggtgctaagaggggtactgtaaaatttgttggcagagct 84497 Query: 580 gaagcgcttggatgtggattttgggttggagtgcaatatgatgagccacttggaaagcac 639 ||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 84496 gaagctcttggacgtggattttgggttggagtccaatatgatgaaccacttggaaagcat 84437 Query: 640 gatggcatg 648 ||||||||| Sbjct: 84436 gatggcatg 84428 Score = 178 bits (90), Expect = 3e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 135 gcagaccaccgtcgaggccctcaaggagaagctctggaggaagaccggcaccgccgtcgc 194 ||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| || Sbjct: 86504 gcagacctccgtcgaggcgctcaaggacaagctctggaggaagaccggcacatccgttgc 86445 Query: 195 ctccatgcgcctcgagctccgcgacgataccggcgccaagatcgccgacctcgacctcga 254 || |||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||| Sbjct: 86444 cttcatgcgcctccagctccgcgacgacaccggcgccatgatcgccgacctcgaccacga 86385 Query: 255 cgccgcgcccctcgcctcctactccccctacaacgggt 292 | ||| ||||||||||||||||||| ||| |||||| Sbjct: 86384 tgacgccaccctcgcctcctactccccatacgacgggt 86347 Score = 135 bits (68), Expect = 4e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 40 tcgtccaagctgcagctgccggcggacgacagcgtcctcctgctcgtcacgcactccaac 99 |||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| Sbjct: 86662 tcgtccaagctgcatctcccggctgacgacagcgtcctcctcctcctcacgcactccaac 86603 Query: 100 ctcaccaccttctcctccgacatccgcgtctc 131 ||| |||||||||||||||||||||||||||| Sbjct: 86602 ctctccaccttctcctccgacatccgcgtctc 86571 Score = 115 bits (58), Expect = 4e-22 Identities = 103/118 (87%) Strand = Plus / Minus Query: 290 ggtaccggctgcatattatcgatcttgatccttcgtcggtgacctctggtggttggttgg 349 ||||||| ||||| ||||||||||| ||||||||||| | ||||||||||||||||||| Sbjct: 86275 ggtaccgtctgcacattatcgatctcgatccttcgtcaatcacctctggtggttggttgg 86216 Query: 350 aagatacttcacttgtcgaaaagtacacaatttcagatgaggcgtacaataagcttga 407 | |||||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct: 86215 aggatacttcccttgttgaaaagtacaccatctcagatgaagcatataataatcttga 86158 Score = 111 bits (56), Expect = 6e-21 Identities = 68/72 (94%) Strand = Plus / Minus Query: 648 ggtgaaaggcattcgcttctttgagtgccctcaagggcatggagcaattgttaggccaga 707 |||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| Sbjct: 83791 ggtgaaaggcattcgctttttcgagtgtcctcaagggcatggagctattgttaggccaga 83732 Query: 708 gaaagtaaaggt 719 |||||||||||| Sbjct: 83731 gaaagtaaaggt 83720