BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf003m21 (955 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CT828885.1| Oryza sativa (indica cultivar-group) cDNA clone:... 839 0.0 ref|NM_001055333.1| Oryza sativa (japonica cultivar-group) Os03g... 839 0.0 dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 839 0.0 dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for ... 831 0.0 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 345 2e-91 >emb|CT828885.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020N15, full insert sequence Length = 891 Score = 839 bits (423), Expect = 0.0 Identities = 658/734 (89%), Gaps = 3/734 (0%) Strand = Plus / Plus Query: 69 gccatggccaccacatccttatccctccatagactccctttccccaccgccaagaagcta 128 |||||||||||||| ||||| ||||| ||| | |||| | ||||||||||| ||||| Sbjct: 41 gccatggccaccacctccttgtccctgcatggcgtcccatcccccaccgccaccaagctc 100 Query: 129 tcctcgtccttcctcggctcccctgcctcctttctccggccgccggcgctcgcggccatc 188 ||||| ||||| |||||| |||| |||||||| ||||||||| || ||| ||| || || Sbjct: 101 tcctcctcctttctcggcgcccccgcctccttcctccggccgacgccgc-cgccgc--tc 157 Query: 189 gccactccctcgcggaggacggtcgccgtcagggccatggcgccccccaagcccggaggc 248 || | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||| Sbjct: 158 gctgccccctcgcggagggcgctcgccgtcagggccatggcgccacccaagcccgggggc 217 Query: 249 aagcccaagaaagtggtgggcatcatcaagctagccctggaggccgggaaggcgacgccg 308 ||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| Sbjct: 218 aagcccaagaaagtggtgggcctcataaagctggcgctggaggccgggaaggccacgccg 277 Query: 309 gcgccgccagtcggcccagcgcttggtgccaagggtgtgaacatcatggccttctgcaag 368 |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 278 gcgccgccggtcggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaag 337 Query: 369 gagtacaatgccaagacggccgagaaggccggctacatcatccccgtcgagatcaccgtg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 338 gagtacaatgccaagacggccgagaaggccggctacatcatccctgtcgagatcaccgtg 397 Query: 429 ttcgatgataagagcttcacctttatcttgaagacccctcctgcctcagtactgctcctc 488 ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 398 ttcgatgataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctc 457 Query: 489 aaggctgcaggtattgaaaaaggttcaaaagagccacagcgagagaaggttggaaaagta 548 ||||| |||||||| || |||||||||||||| || |||||||||||||||||||||||| Sbjct: 458 aaggcagcaggtatcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaaagta 517 Query: 549 acagcagatcaagtacgtgcaatagctcaagagaagttgccggacttgaactgcaagagc 608 |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct: 518 acagcagatcaagtacgtacaatagctcaagagaagttgccagatttgaactgcaagagc 577 Query: 609 attgactcagctatgagaatcatagcaggcactgccgctaatatgggcattgatgttgac 668 |||||||| || |||||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct: 578 attgactcggccatgagaattatagcgggcactgctgctaatatgggaatcgaggttgac 637 Query: 669 cctccaatccttgagaagaaagaaaaggtgatcttgtagtctgttttgcaggcacccaca 728 |||||||| ||||||||||| ||||||||| ||||||||||||||| | |||||||| Sbjct: 638 cctccaatacttgagaagaaggaaaaggtgctcttgtagtctgtttctctggcacccatg 697 Query: 729 aatctccttaccaatgcccatctgtagattttgcttcctttttgttcgccaatctgctgt 788 |||| |||||| ||| ||| ||||||||||| ||||||||||||||| |||| || ||| Sbjct: 698 aatcaccttactgatggccacctgtagattttacttcctttttgttcgtcaatatgttgt 757 Query: 789 gcctagtgcttgaa 802 ||||||||||||| Sbjct: 758 tcctagtgcttgaa 771 >ref|NM_001055333.1| Oryza sativa (japonica cultivar-group) Os03g0122200 (Os03g0122200) mRNA, complete cds Length = 984 Score = 839 bits (423), Expect = 0.0 Identities = 658/734 (89%), Gaps = 3/734 (0%) Strand = Plus / Plus Query: 69 gccatggccaccacatccttatccctccatagactccctttccccaccgccaagaagcta 128 |||||||||||||| ||||| ||||| ||| | |||| | ||||||||||| ||||| Sbjct: 44 gccatggccaccacctccttgtccctgcatggcgtcccatcccccaccgccaccaagctc 103 Query: 129 tcctcgtccttcctcggctcccctgcctcctttctccggccgccggcgctcgcggccatc 188 ||||| ||||| |||||| |||| |||||||| ||||||||| || ||| ||| || || Sbjct: 104 tcctcctcctttctcggcgcccccgcctccttcctccggccgacgccgc-cgccgc--tc 160 Query: 189 gccactccctcgcggaggacggtcgccgtcagggccatggcgccccccaagcccggaggc 248 || | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||| Sbjct: 161 gctgccccctcgcggagggcgctcgccgtcagggccatggcgccacccaagcccgggggc 220 Query: 249 aagcccaagaaagtggtgggcatcatcaagctagccctggaggccgggaaggcgacgccg 308 ||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| Sbjct: 221 aagcccaagaaagtggtgggcctcataaagctggcgctggaggccgggaaggccacgccg 280 Query: 309 gcgccgccagtcggcccagcgcttggtgccaagggtgtgaacatcatggccttctgcaag 368 |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 281 gcgccgccggtcggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaag 340 Query: 369 gagtacaatgccaagacggccgagaaggccggctacatcatccccgtcgagatcaccgtg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 341 gagtacaatgccaagacggccgagaaggccggctacatcatccctgtcgagatcaccgtg 400 Query: 429 ttcgatgataagagcttcacctttatcttgaagacccctcctgcctcagtactgctcctc 488 ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 401 ttcgatgataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctc 460 Query: 489 aaggctgcaggtattgaaaaaggttcaaaagagccacagcgagagaaggttggaaaagta 548 ||||| |||||||| || |||||||||||||| || |||||||||||||||||||||||| Sbjct: 461 aaggcagcaggtatcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaaagta 520 Query: 549 acagcagatcaagtacgtgcaatagctcaagagaagttgccggacttgaactgcaagagc 608 |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct: 521 acagcagatcaagtacgtacaatagctcaagagaagttgccagatttgaactgcaagagc 580 Query: 609 attgactcagctatgagaatcatagcaggcactgccgctaatatgggcattgatgttgac 668 |||||||| || |||||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct: 581 attgactcggccatgagaattatagcgggcactgctgctaatatgggaatcgaggttgac 640 Query: 669 cctccaatccttgagaagaaagaaaaggtgatcttgtagtctgttttgcaggcacccaca 728 |||||||| ||||||||||| ||||||||| ||||||||||||||| | |||||||| Sbjct: 641 cctccaatacttgagaagaaggaaaaggtgctcttgtagtctgtttctctggcacccatg 700 Query: 729 aatctccttaccaatgcccatctgtagattttgcttcctttttgttcgccaatctgctgt 788 |||| |||||| ||| ||| ||||||||||| ||||||||||||||| |||| || ||| Sbjct: 701 aatcaccttactgatggccacctgtagattttacttcctttttgttcgtcaatatgttgt 760 Query: 789 gcctagtgcttgaa 802 ||||||||||||| Sbjct: 761 tcctagtgcttgaa 774 >dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H03, full insert sequence Length = 986 Score = 839 bits (423), Expect = 0.0 Identities = 658/734 (89%), Gaps = 3/734 (0%) Strand = Plus / Plus Query: 69 gccatggccaccacatccttatccctccatagactccctttccccaccgccaagaagcta 128 |||||||||||||| ||||| ||||| ||| | |||| | ||||||||||| ||||| Sbjct: 45 gccatggccaccacctccttgtccctgcatggcgtcccatcccccaccgccaccaagctc 104 Query: 129 tcctcgtccttcctcggctcccctgcctcctttctccggccgccggcgctcgcggccatc 188 ||||| ||||| |||||| |||| |||||||| ||||||||| || ||| ||| || || Sbjct: 105 tcctcctcctttctcggcgcccccgcctccttcctccggccgacgccgc-cgccgc--tc 161 Query: 189 gccactccctcgcggaggacggtcgccgtcagggccatggcgccccccaagcccggaggc 248 || | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||| Sbjct: 162 gctgccccctcgcggagggcgctcgccgtcagggccatggcgccacccaagcccgggggc 221 Query: 249 aagcccaagaaagtggtgggcatcatcaagctagccctggaggccgggaaggcgacgccg 308 ||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| Sbjct: 222 aagcccaagaaagtggtgggcctcataaagctggcgctggaggccgggaaggccacgccg 281 Query: 309 gcgccgccagtcggcccagcgcttggtgccaagggtgtgaacatcatggccttctgcaag 368 |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 282 gcgccgccggtcggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaag 341 Query: 369 gagtacaatgccaagacggccgagaaggccggctacatcatccccgtcgagatcaccgtg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 342 gagtacaatgccaagacggccgagaaggccggctacatcatccctgtcgagatcaccgtg 401 Query: 429 ttcgatgataagagcttcacctttatcttgaagacccctcctgcctcagtactgctcctc 488 ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 402 ttcgatgataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctc 461 Query: 489 aaggctgcaggtattgaaaaaggttcaaaagagccacagcgagagaaggttggaaaagta 548 ||||| |||||||| || |||||||||||||| || |||||||||||||||||||||||| Sbjct: 462 aaggcagcaggtatcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaaagta 521 Query: 549 acagcagatcaagtacgtgcaatagctcaagagaagttgccggacttgaactgcaagagc 608 |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct: 522 acagcagatcaagtacgtacaatagctcaagagaagttgccagatttgaactgcaagagc 581 Query: 609 attgactcagctatgagaatcatagcaggcactgccgctaatatgggcattgatgttgac 668 |||||||| || |||||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct: 582 attgactcggccatgagaattatagcgggcactgctgctaatatgggaatcgaggttgac 641 Query: 669 cctccaatccttgagaagaaagaaaaggtgatcttgtagtctgttttgcaggcacccaca 728 |||||||| ||||||||||| ||||||||| ||||||||||||||| | |||||||| Sbjct: 642 cctccaatacttgagaagaaggaaaaggtgctcttgtagtctgtttctctggcacccatg 701 Query: 729 aatctccttaccaatgcccatctgtagattttgcttcctttttgttcgccaatctgctgt 788 |||| |||||| ||| ||| ||||||||||| ||||||||||||||| |||| || ||| Sbjct: 702 aatcaccttactgatggccacctgtagattttacttcctttttgttcgtcaatatgttgt 761 Query: 789 gcctagtgcttgaa 802 ||||||||||||| Sbjct: 762 tcctagtgcttgaa 775 >dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for plastid ribosomal protein L11, complete cds Length = 790 Score = 831 bits (419), Expect = 0.0 Identities = 658/734 (89%), Gaps = 4/734 (0%) Strand = Plus / Plus Query: 69 gccatggccaccacatccttatccctccatagactccctttccccaccgccaagaagcta 128 |||||||||||||| ||||| ||||| ||| | |||| | ||||||||||| ||||| Sbjct: 38 gccatggccaccacctccttgtccctgcatggcgtcccatcccccaccgccaccaagctc 97 Query: 129 tcctcgtccttcctcggctcccctgcctcctttctccggccgccggcgctcgcggccatc 188 ||||| ||||| |||||| |||| |||||||| ||||||||| || ||| ||| || || Sbjct: 98 tcctcctcctttctcggcgcccccgcctccttcctccggccgacgccgc-cgccgc--tc 154 Query: 189 gccactccctcgcggaggacggtcgccgtcagggccatggcgccccccaagcccggaggc 248 || | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||| Sbjct: 155 gctgccccctcgcggagggcgctcgccgtcagggccatggcgccacccaagcccgggggc 214 Query: 249 aagcccaagaaagtggtgggcatcatcaagctagccctggaggccgggaaggcgacgccg 308 ||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| Sbjct: 215 aagcccaagaaagtggtgggcctcataaagctggcgctggaggccgggaaggccacgccg 274 Query: 309 gcgccgccagtcggcccagcgcttggtgccaagggtgtgaacatcatggccttctgcaag 368 |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 275 gcgccgccggtcggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaag 334 Query: 369 gagtacaatgccaagacggccgagaaggccggctacatcatccccgtcgagatcaccgtg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 335 gagtacaatgccaagacggccgagaaggccggctacatcatccctgtcgagatcaccgtg 394 Query: 429 ttcgatgataagagcttcacctttatcttgaagacccctcctgcctcagtactgctcctc 488 ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 395 ttcgatgataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctc 454 Query: 489 aaggctgcaggtattgaaaaaggttcaaaagagccacagcgagagaaggttggaaaagta 548 ||||| |||||||| || |||||||||||||| || |||||||||||||||||||||||| Sbjct: 455 aaggcagcaggtatcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaaagta 514 Query: 549 acagcagatcaagtacgtgcaatagctcaagagaagttgccggacttgaactgcaagagc 608 |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct: 515 acagcagatcaagtacgtacaatagctcaagagaagttgccagatttgaactgcaagagc 574 Query: 609 attgactcagctatgagaatcatagcaggcactgccgctaatatgggcattgatgttgac 668 |||||||| || |||||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct: 575 attgactcggccatgagaattatagcgggcactgctgctaatatgggaatcgaggttgac 634 Query: 669 cctccaatccttgagaagaaagaaaaggtgatcttgtagtctgttttgcaggcacccaca 728 |||||||| ||||||||||| ||||||||| ||||||||||||||| | |||||||| Sbjct: 635 cctccaatacttgagaagaaggaaaaggtgctcttgtagtctgtttctctggcacccatg 694 Query: 729 aatctccttaccaatgcccatctgtagattttgcttcctttttgttcgccaatctgctgt 788 |||| |||||| ||| ||| ||||||||||| ||||||||||||||| |||| || ||| Sbjct: 695 aatcaccttactgatggccacctgtagattttacttcctttttgttcgtcaatatgttgt 754 Query: 789 gcctagtgcttgaa 802 ||||||||||||| Sbjct: 755 -cctagtgcttgaa 767 >dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 345 bits (174), Expect = 2e-91 Identities = 273/306 (89%) Strand = Plus / Minus Query: 497 aggtattgaaaaaggttcaaaagagccacagcgagagaaggttggaaaagtaacagcaga 556 |||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 1212445 aggtatcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaaagtaacagcaga 1212386 Query: 557 tcaagtacgtgcaatagctcaagagaagttgccggacttgaactgcaagagcattgactc 616 |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1212385 tcaagtacgtacaatagctcaagagaagttgccagatttgaactgcaagagcattgactc 1212326 Query: 617 agctatgagaatcatagcaggcactgccgctaatatgggcattgatgttgaccctccaat 676 || |||||||| ||||| |||||||| ||||||||||| || || |||||||||||||| Sbjct: 1212325 ggccatgagaattatagcgggcactgctgctaatatgggaatcgaggttgaccctccaat 1212266 Query: 677 ccttgagaagaaagaaaaggtgatcttgtagtctgttttgcaggcacccacaaatctcct 736 ||||||||||| ||||||||| ||||||||||||||| | |||||||| |||| ||| Sbjct: 1212265 acttgagaagaaggaaaaggtgctcttgtagtctgtttctctggcacccatgaatcacct 1212206 Query: 737 taccaatgcccatctgtagattttgcttcctttttgttcgccaatctgctgtgcctagtg 796 ||| ||| ||| ||||||||||| ||||||||||||||| |||| || ||| ||||||| Sbjct: 1212205 tactgatggccacctgtagattttacttcctttttgttcgtcaatatgttgttcctagtg 1212146 Query: 797 cttgaa 802 |||||| Sbjct: 1212145 cttgaa 1212140 Score = 278 bits (140), Expect = 4e-71 Identities = 167/176 (94%) Strand = Plus / Minus Query: 260 agtggtgggcatcatcaagctagccctggaggccgggaaggcgacgccggcgccgccagt 319 |||||||||| |||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct: 1213804 agtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggt 1213745 Query: 320 cggcccagcgcttggtgccaagggtgtgaacatcatggccttctgcaaggagtacaatgc 379 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1213744 cggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgc 1213685 Query: 380 caagacggccgagaaggccggctacatcatccccgtcgagatcaccgtgttcgatg 435 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1213684 caagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatg 1213629 Score = 139 bits (70), Expect = 2e-29 Identities = 164/193 (84%), Gaps = 3/193 (1%) Strand = Plus / Minus Query: 69 gccatggccaccacatccttatccctccatagactccctttccccaccgccaagaagcta 128 |||||||||||||| ||||| ||||| ||| | |||| | ||||||||||| ||||| Sbjct: 1214078 gccatggccaccacctccttgtccctgcatggcgtcccatcccccaccgccaccaagctc 1214019 Query: 129 tcctcgtccttcctcggctcccctgcctcctttctccggccgccggcgctcgcggccatc 188 ||||| ||||| |||||| |||| |||||||| ||||||||| || ||| ||| || || Sbjct: 1214018 tcctcctcctttctcggcgcccccgcctccttcctccggccgacgccgc-cgccgc--tc 1213962 Query: 189 gccactccctcgcggaggacggtcgccgtcagggccatggcgccccccaagcccggaggc 248 || | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||| Sbjct: 1213961 gctgccccctcgcggagggcgctcgccgtcagggccatggcgccacccaagcccgggggc 1213902 Query: 249 aagcccaagaaag 261 ||||||||||||| Sbjct: 1213901 aagcccaagaaag 1213889 Score = 91.7 bits (46), Expect = 5e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 435 gataagagcttcacctttatcttgaagacccctcctgcctcagtactgctcctcaaggct 494 ||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1213532 gataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggca 1213473 Query: 495 gcaggt 500 |||||| Sbjct: 1213472 gcaggt 1213467