BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem209c14 (1697 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 339 2e-89 dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 339 2e-89 dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic D... 339 2e-89 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 339 bits (171), Expect = 2e-89 Identities = 279/315 (88%) Strand = Plus / Plus Query: 911 gaggcgccgcatcgccgtcgacgtcgccagggcgctcgcctacctccaccacgagtgccg 970 |||||||| | |||||||||||||||| | || |||||| ||||| |||||||||||| Sbjct: 26164611 gaggcgccacgtcgccgtcgacgtcgcgaaggggctcgcgtacctgcaccacgagtgcaa 26164670 Query: 971 gcggcagatcctgcacctcgacatcaagccggccaacatactcctcgacgggggactccg 1030 | |||||||| ||||| |||||||||||||| ||||||||||||||||| | |||| Sbjct: 26164671 gaaccagatccttcacctggacatcaagccggcgaacatactcctcgacggcgacttccg 26164730 Query: 1031 ggcgcacgtgtcggacttcggcatctccatgtccatcggcagggacctgaccagcgtgga 1090 ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 26164731 ggcgcacgtctccgacttcggcatctccatgtccatcgggagggacctgaccagcgtcga 26164790 Query: 1091 cacccgcgggaggggcaccgtgggatacatggcgccagagatgctcgtgaacgcgctatc 1150 ||| ||| ||||||||||| | || ||||||||||| |||||||| || |||||||| || Sbjct: 26164791 cacgcgctggaggggcaccctcggttacatggcgccggagatgctggtcaacgcgctgtc 26164850 Query: 1151 cgccaagtccgacgtctacagctacggcatgacgctcttcgagctcgtcggcgggcgccg 1210 ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct: 26164851 cgccaagtccgacgtgtacagctacggcatgatgctgttcgagctcgtcggcggacgccg 26164910 Query: 1211 gaacttcgagctcgc 1225 ||||||||||||||| Sbjct: 26164911 gaacttcgagctcgc 26164925 Score = 127 bits (64), Expect = 2e-25 Identities = 130/152 (85%) Strand = Plus / Plus Query: 533 gtttcacatcgaagggctgccgcgggagtactcgtacggcgagatccaggccatgaccaa 592 ||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 26164275 gtttcgcatcgacgggctgctccgggagtactcgcacggcgagatccaggccatgaccga 26164334 Query: 593 agacttcgggagcatggtggggcgaggcggatccgccgccgtctttcgaggcctccttga 652 ||||||| || ||||||| |||||||| |||||| ||||||| | ||| |||| || Sbjct: 26164335 caacttcggctgcgtggtgggccgaggcggctccgccaccgtcttcaggggcgtcctcga 26164394 Query: 653 cgacgacacggtggtcgccgtaaagcggatcg 684 ||||| ||||| ||||||||| |||||||||| Sbjct: 26164395 cgacggcacggcggtcgccgtcaagcggatcg 26164426 Score = 105 bits (53), Expect = 6e-19 Identities = 107/125 (85%) Strand = Plus / Plus Query: 1336 gcggcgcggccggcgtcgacgaggaggaggtcaaggtggtggtcaaggtggcgctctggt 1395 |||||||||| |||||||||||||||||||| |||| || || ||||||||| | |||| Sbjct: 26165063 gcggcgcggctggcgtcgacgaggaggaggtggaggtcgtcgtgaaggtggcgttgtggt 26165122 Query: 1396 gcatccagcatagccgggacacgaggcccagcatgccaactgtcgtggagatgctcgaag 1455 ||| |||||||||||||||| ||||||| ||||| | |||||||| |||||||||| Sbjct: 26165123 gcacgcagcatagccgggacatgaggcccggcatgacggacgtcgtggacatgctcgaag 26165182 Query: 1456 ggcgc 1460 ||||| Sbjct: 26165183 ggcgc 26165187 Score = 101 bits (51), Expect = 9e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1243 cgccggatttcacgagggacttcttcccgtgcgtcgtgagggacaggatggcggaaggca 1302 ||||||||||||| | ||| ||| ||||||||||| || |||||||||||| ||||||| Sbjct: 26164958 cgccggatttcaccaaggaattcctcccgtgcgtcatgcgggacaggatggaggaaggcc 26165017 Query: 1303 ggatcatggaagtggtggacgacaccatggtgcgcggcg 1341 || ||||||| |||||||||| |||||||| |||||||| Sbjct: 26165018 ggctcatggaggtggtggacgccaccatggcgcgcggcg 26165056 >dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 339 bits (171), Expect = 2e-89 Identities = 279/315 (88%) Strand = Plus / Plus Query: 911 gaggcgccgcatcgccgtcgacgtcgccagggcgctcgcctacctccaccacgagtgccg 970 |||||||| | |||||||||||||||| | || |||||| ||||| |||||||||||| Sbjct: 70028 gaggcgccacgtcgccgtcgacgtcgcgaaggggctcgcgtacctgcaccacgagtgcaa 70087 Query: 971 gcggcagatcctgcacctcgacatcaagccggccaacatactcctcgacgggggactccg 1030 | |||||||| ||||| |||||||||||||| ||||||||||||||||| | |||| Sbjct: 70088 gaaccagatccttcacctggacatcaagccggcgaacatactcctcgacggcgacttccg 70147 Query: 1031 ggcgcacgtgtcggacttcggcatctccatgtccatcggcagggacctgaccagcgtgga 1090 ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 70148 ggcgcacgtctccgacttcggcatctccatgtccatcgggagggacctgaccagcgtcga 70207 Query: 1091 cacccgcgggaggggcaccgtgggatacatggcgccagagatgctcgtgaacgcgctatc 1150 ||| ||| ||||||||||| | || ||||||||||| |||||||| || |||||||| || Sbjct: 70208 cacgcgctggaggggcaccctcggttacatggcgccggagatgctggtcaacgcgctgtc 70267 Query: 1151 cgccaagtccgacgtctacagctacggcatgacgctcttcgagctcgtcggcgggcgccg 1210 ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct: 70268 cgccaagtccgacgtgtacagctacggcatgatgctgttcgagctcgtcggcggacgccg 70327 Query: 1211 gaacttcgagctcgc 1225 ||||||||||||||| Sbjct: 70328 gaacttcgagctcgc 70342 Score = 127 bits (64), Expect = 2e-25 Identities = 130/152 (85%) Strand = Plus / Plus Query: 533 gtttcacatcgaagggctgccgcgggagtactcgtacggcgagatccaggccatgaccaa 592 ||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 69692 gtttcgcatcgacgggctgctccgggagtactcgcacggcgagatccaggccatgaccga 69751 Query: 593 agacttcgggagcatggtggggcgaggcggatccgccgccgtctttcgaggcctccttga 652 ||||||| || ||||||| |||||||| |||||| ||||||| | ||| |||| || Sbjct: 69752 caacttcggctgcgtggtgggccgaggcggctccgccaccgtcttcaggggcgtcctcga 69811 Query: 653 cgacgacacggtggtcgccgtaaagcggatcg 684 ||||| ||||| ||||||||| |||||||||| Sbjct: 69812 cgacggcacggcggtcgccgtcaagcggatcg 69843 Score = 105 bits (53), Expect = 6e-19 Identities = 107/125 (85%) Strand = Plus / Plus Query: 1336 gcggcgcggccggcgtcgacgaggaggaggtcaaggtggtggtcaaggtggcgctctggt 1395 |||||||||| |||||||||||||||||||| |||| || || ||||||||| | |||| Sbjct: 70480 gcggcgcggctggcgtcgacgaggaggaggtggaggtcgtcgtgaaggtggcgttgtggt 70539 Query: 1396 gcatccagcatagccgggacacgaggcccagcatgccaactgtcgtggagatgctcgaag 1455 ||| |||||||||||||||| ||||||| ||||| | |||||||| |||||||||| Sbjct: 70540 gcacgcagcatagccgggacatgaggcccggcatgacggacgtcgtggacatgctcgaag 70599 Query: 1456 ggcgc 1460 ||||| Sbjct: 70600 ggcgc 70604 Score = 101 bits (51), Expect = 9e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1243 cgccggatttcacgagggacttcttcccgtgcgtcgtgagggacaggatggcggaaggca 1302 ||||||||||||| | ||| ||| ||||||||||| || |||||||||||| ||||||| Sbjct: 70375 cgccggatttcaccaaggaattcctcccgtgcgtcatgcgggacaggatggaggaaggcc 70434 Query: 1303 ggatcatggaagtggtggacgacaccatggtgcgcggcg 1341 || ||||||| |||||||||| |||||||| |||||||| Sbjct: 70435 ggctcatggaggtggtggacgccaccatggcgcgcggcg 70473 >dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08 Length = 57846 Score = 339 bits (171), Expect = 2e-89 Identities = 279/315 (88%) Strand = Plus / Plus Query: 911 gaggcgccgcatcgccgtcgacgtcgccagggcgctcgcctacctccaccacgagtgccg 970 |||||||| | |||||||||||||||| | || |||||| ||||| |||||||||||| Sbjct: 5741 gaggcgccacgtcgccgtcgacgtcgcgaaggggctcgcgtacctgcaccacgagtgcaa 5800 Query: 971 gcggcagatcctgcacctcgacatcaagccggccaacatactcctcgacgggggactccg 1030 | |||||||| ||||| |||||||||||||| ||||||||||||||||| | |||| Sbjct: 5801 gaaccagatccttcacctggacatcaagccggcgaacatactcctcgacggcgacttccg 5860 Query: 1031 ggcgcacgtgtcggacttcggcatctccatgtccatcggcagggacctgaccagcgtgga 1090 ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 5861 ggcgcacgtctccgacttcggcatctccatgtccatcgggagggacctgaccagcgtcga 5920 Query: 1091 cacccgcgggaggggcaccgtgggatacatggcgccagagatgctcgtgaacgcgctatc 1150 ||| ||| ||||||||||| | || ||||||||||| |||||||| || |||||||| || Sbjct: 5921 cacgcgctggaggggcaccctcggttacatggcgccggagatgctggtcaacgcgctgtc 5980 Query: 1151 cgccaagtccgacgtctacagctacggcatgacgctcttcgagctcgtcggcgggcgccg 1210 ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct: 5981 cgccaagtccgacgtgtacagctacggcatgatgctgttcgagctcgtcggcggacgccg 6040 Query: 1211 gaacttcgagctcgc 1225 ||||||||||||||| Sbjct: 6041 gaacttcgagctcgc 6055 Score = 127 bits (64), Expect = 2e-25 Identities = 130/152 (85%) Strand = Plus / Plus Query: 533 gtttcacatcgaagggctgccgcgggagtactcgtacggcgagatccaggccatgaccaa 592 ||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||| | Sbjct: 5405 gtttcgcatcgacgggctgctccgggagtactcgcacggcgagatccaggccatgaccga 5464 Query: 593 agacttcgggagcatggtggggcgaggcggatccgccgccgtctttcgaggcctccttga 652 ||||||| || ||||||| |||||||| |||||| ||||||| | ||| |||| || Sbjct: 5465 caacttcggctgcgtggtgggccgaggcggctccgccaccgtcttcaggggcgtcctcga 5524 Query: 653 cgacgacacggtggtcgccgtaaagcggatcg 684 ||||| ||||| ||||||||| |||||||||| Sbjct: 5525 cgacggcacggcggtcgccgtcaagcggatcg 5556 Score = 105 bits (53), Expect = 6e-19 Identities = 107/125 (85%) Strand = Plus / Plus Query: 1336 gcggcgcggccggcgtcgacgaggaggaggtcaaggtggtggtcaaggtggcgctctggt 1395 |||||||||| |||||||||||||||||||| |||| || || ||||||||| | |||| Sbjct: 6193 gcggcgcggctggcgtcgacgaggaggaggtggaggtcgtcgtgaaggtggcgttgtggt 6252 Query: 1396 gcatccagcatagccgggacacgaggcccagcatgccaactgtcgtggagatgctcgaag 1455 ||| |||||||||||||||| ||||||| ||||| | |||||||| |||||||||| Sbjct: 6253 gcacgcagcatagccgggacatgaggcccggcatgacggacgtcgtggacatgctcgaag 6312 Query: 1456 ggcgc 1460 ||||| Sbjct: 6313 ggcgc 6317 Score = 101 bits (51), Expect = 9e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1243 cgccggatttcacgagggacttcttcccgtgcgtcgtgagggacaggatggcggaaggca 1302 ||||||||||||| | ||| ||| ||||||||||| || |||||||||||| ||||||| Sbjct: 6088 cgccggatttcaccaaggaattcctcccgtgcgtcatgcgggacaggatggaggaaggcc 6147 Query: 1303 ggatcatggaagtggtggacgacaccatggtgcgcggcg 1341 || ||||||| |||||||||| |||||||| |||||||| Sbjct: 6148 ggctcatggaggtggtggacgccaccatggcgcgcggcg 6186