BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem204f04 (1354 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001049756.1| Oryza sativa (japonica cultivar-group) Os01g... 434 e-118 dbj|AK068565.1| Oryza sativa (japonica cultivar-group) cDNA clon... 434 e-118 gb|AY151042.1| Oryza sativa (japonica cultivar-group) transcript... 434 e-118 emb|CR855227.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 341 5e-90 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 341 5e-90 >ref|NM_001049756.1| Oryza sativa (japonica cultivar-group) Os01g0524500 (Os01g0524500) mRNA, complete cds Length = 1328 Score = 434 bits (219), Expect = e-118 Identities = 297/321 (92%), Gaps = 9/321 (2%) Strand = Plus / Plus Query: 431 aagagctgctccaaggcagagcaggagaggcgcaagggcatcccatggacagaggaagag 490 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 418 aagagctgctccaaggcggagcaggagaggcgcaagggcatcccatggacggaggaagag 477 Query: 491 cacaggttgtttttgctggggctggacaagttcggcaagggcgactggcggagcatctcg 550 |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 478 cacaggctgttcttgctggggctggacaagttcggcaagggggactggcggagcatctcg 537 Query: 551 cgcaacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttc 610 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 538 cgcaacttcgtcatctcgcggacgccaacgcaggtggcgagccacgcgcagaagtacttc 597 Query: 611 atccgcctccactccatgaaccgggaccggcgccgctccagcattcacgacatcaccagc 670 ||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 598 atccgcctcaactccatgaaccgcgaccgccgccgctccagcatccacgacatcaccagc 657 Query: 671 gtcaccgcggggg---aagtcgccgcgcagcaggg---cccgatcaccgg---ccaggcc 721 |||||||| || | | ||||||||||||||||| |||||||||||| ||||||| Sbjct: 658 gtcaccgccggcgatcaggtcgccgcgcagcagggcgccccgatcaccggccaccaggcc 717 Query: 722 acgggcagccccgccgcggcg 742 ||||||| |||||| |||||| Sbjct: 718 acgggcaaccccgcggcggcg 738 Score = 167 bits (84), Expect = 1e-37 Identities = 123/136 (90%) Strand = Plus / Plus Query: 812 gcgcccatgggccaccccgtcccgggacacatggtgtccgccgccgtcggcacgccggtc 871 ||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| Sbjct: 820 gcgcccatgggccaccccgtcgccggccacatggtgcccgccgccgtcggcacgccggtg 879 Query: 872 atgttcccgccggggcacgcgccctacgtcgtgccggtcggctacccggcgcccccagcg 931 ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 880 gtgttcccgccgggccacgcgccgtacgtcgtgcccgtcggctacccggcgccaccggcc 939 Query: 932 aagatgcgccaatgac 947 ||||||| |||||||| Sbjct: 940 aagatgcaccaatgac 955 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 274 ggaggacgtcggcgccatcgaggccggccgcgtcccgctcccgcgctacgctggtgagga 333 ||||||||||| |||||||| || |||||||||||||||||||||||||| || ||||| Sbjct: 252 ggaggacgtcgcggccatcgacgcgggccgcgtcccgctcccgcgctacgccggggagga 311 Query: 334 gtccgcggtgccgcccgacggcgccg 359 |||||||| |||||||||||| |||| Sbjct: 312 gtccgcggcgccgcccgacggagccg 337 >dbj|AK068565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154G12, full insert sequence Length = 1329 Score = 434 bits (219), Expect = e-118 Identities = 297/321 (92%), Gaps = 9/321 (2%) Strand = Plus / Plus Query: 431 aagagctgctccaaggcagagcaggagaggcgcaagggcatcccatggacagaggaagag 490 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 419 aagagctgctccaaggcggagcaggagaggcgcaagggcatcccatggacggaggaagag 478 Query: 491 cacaggttgtttttgctggggctggacaagttcggcaagggcgactggcggagcatctcg 550 |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 479 cacaggctgttcttgctggggctggacaagttcggcaagggggactggcggagcatctcg 538 Query: 551 cgcaacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttc 610 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 539 cgcaacttcgtcatctcgcggacgccaacgcaggtggcgagccacgcgcagaagtacttc 598 Query: 611 atccgcctccactccatgaaccgggaccggcgccgctccagcattcacgacatcaccagc 670 ||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 599 atccgcctcaactccatgaaccgcgaccgccgccgctccagcatccacgacatcaccagc 658 Query: 671 gtcaccgcggggg---aagtcgccgcgcagcaggg---cccgatcaccgg---ccaggcc 721 |||||||| || | | ||||||||||||||||| |||||||||||| ||||||| Sbjct: 659 gtcaccgccggcgatcaggtcgccgcgcagcagggcgccccgatcaccggccaccaggcc 718 Query: 722 acgggcagccccgccgcggcg 742 ||||||| |||||| |||||| Sbjct: 719 acgggcaaccccgcggcggcg 739 Score = 167 bits (84), Expect = 1e-37 Identities = 123/136 (90%) Strand = Plus / Plus Query: 812 gcgcccatgggccaccccgtcccgggacacatggtgtccgccgccgtcggcacgccggtc 871 ||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| Sbjct: 821 gcgcccatgggccaccccgtcgccggccacatggtgcccgccgccgtcggcacgccggtg 880 Query: 872 atgttcccgccggggcacgcgccctacgtcgtgccggtcggctacccggcgcccccagcg 931 ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 881 gtgttcccgccgggccacgcgccgtacgtcgtgcccgtcggctacccggcgccaccggcc 940 Query: 932 aagatgcgccaatgac 947 ||||||| |||||||| Sbjct: 941 aagatgcaccaatgac 956 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 274 ggaggacgtcggcgccatcgaggccggccgcgtcccgctcccgcgctacgctggtgagga 333 ||||||||||| |||||||| || |||||||||||||||||||||||||| || ||||| Sbjct: 253 ggaggacgtcgcggccatcgacgcgggccgcgtcccgctcccgcgctacgccggggagga 312 Query: 334 gtccgcggtgccgcccgacggcgccg 359 |||||||| |||||||||||| |||| Sbjct: 313 gtccgcggcgccgcccgacggagccg 338 >gb|AY151042.1| Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds Length = 1330 Score = 434 bits (219), Expect = e-118 Identities = 297/321 (92%), Gaps = 9/321 (2%) Strand = Plus / Plus Query: 431 aagagctgctccaaggcagagcaggagaggcgcaagggcatcccatggacagaggaagag 490 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 404 aagagctgctccaaggcggagcaggagaggcgcaagggcatcccatggacggaggaagag 463 Query: 491 cacaggttgtttttgctggggctggacaagttcggcaagggcgactggcggagcatctcg 550 |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 464 cacaggctgttcttgctggggctggacaagttcggcaagggggactggcggagcatctcg 523 Query: 551 cgcaacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttc 610 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 524 cgcaacttcgtcatctcgcggacgccaacgcaggtggcgagccacgcgcagaagtacttc 583 Query: 611 atccgcctccactccatgaaccgggaccggcgccgctccagcattcacgacatcaccagc 670 ||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 584 atccgcctcaactccatgaaccgcgaccgccgccgctccagcatccacgacatcaccagc 643 Query: 671 gtcaccgcggggg---aagtcgccgcgcagcaggg---cccgatcaccgg---ccaggcc 721 |||||||| || | | ||||||||||||||||| |||||||||||| ||||||| Sbjct: 644 gtcaccgccggcgatcaggtcgccgcgcagcagggcgccccgatcaccggccaccaggcc 703 Query: 722 acgggcagccccgccgcggcg 742 ||||||| |||||| |||||| Sbjct: 704 acgggcaaccccgcggcggcg 724 Score = 167 bits (84), Expect = 1e-37 Identities = 123/136 (90%) Strand = Plus / Plus Query: 812 gcgcccatgggccaccccgtcccgggacacatggtgtccgccgccgtcggcacgccggtc 871 ||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| Sbjct: 806 gcgcccatgggccaccccgtcgccggccacatggtgcccgccgccgtcggcacgccggtg 865 Query: 872 atgttcccgccggggcacgcgccctacgtcgtgccggtcggctacccggcgcccccagcg 931 ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 866 gtgttcccgccgggccacgcgccgtacgtcgtgcccgtcggctacccggcgcctccggcc 925 Query: 932 aagatgcgccaatgac 947 ||||||| |||||||| Sbjct: 926 aagatgcaccaatgac 941 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 274 ggaggacgtcggcgccatcgaggccggccgcgtcccgctcccgcgctacgctggtgagga 333 ||||||||||| |||||||| || |||||||||||||||||||||||||| || ||||| Sbjct: 238 ggaggacgtcgcggccatcgacgcgggccgcgtcccgctcccgcgctacgccggggagga 297 Query: 334 gtccgcggtgccgcccgacggcgccg 359 |||||||| |||||||||||| |||| Sbjct: 298 gtccgcggcgccgcccgacggagccg 323 >emb|CR855227.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159H11-OSIGBa0137A07, complete sequence Length = 144811 Score = 341 bits (172), Expect = 5e-90 Identities = 251/276 (90%), Gaps = 1/276 (0%) Strand = Plus / Minus Query: 493 caggttgtttttgctggggctggacaagttcggcaagggcgactggcggagcatctcgcg 552 |||| |||| ||||||||||||||||||||||||||||| |||| || ||||||||||| Sbjct: 125643 caggctgttcttgctggggctggacaagttcggcaagggagacttgcacagcatctcgcg 125584 Query: 553 caacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcat 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125583 caacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcat 125524 Query: 613 ccgcctccactccatgaaccgggaccggcgccgctccagcattcacgacatcaccagcgt 672 |||||| ||||||||||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 125523 acgcctcaactccatgaaccgcgatcgtcgccgctccagcatccacgacatcaccagcgt 125464 Query: 673 caccgcgggggaagtcgccgcgcagcagggcccgatcaccggccaggccacgggcagccc 732 |||||| || || || |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 125463 caccgccggcgacgttgccgcgcagcagggcccgatcaccggccaggcca-aggcagccc 125405 Query: 733 cgccgcggcgctggggccgggggccatgaagcaccc 768 || |||||||| ||||| || |||||||||||| Sbjct: 125404 tgcggcggcgctcgggccacagggcatgaagcaccc 125369 Score = 117 bits (59), Expect = 1e-22 Identities = 65/67 (97%) Strand = Plus / Minus Query: 431 aagagctgctccaaggcagagcaggagaggcgcaagggcatcccatggacagaggaagag 490 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 125858 aagagctgctccaaggcggagcaggagaggcgcaagggcatcccatggacggaggaagag 125799 Query: 491 cacaggt 497 ||||||| Sbjct: 125798 cacaggt 125792 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 814 gcccatgggccaccccgtcccgggacacatggtgtccgccgccgtcggcacgccggtcat 873 ||||||||||||||||||| | || ||||||||| ||||||||||||||||||||| || Sbjct: 125335 gcccatgggccaccccgtcgccggccacatggtgctcgccgccgtcggcacgccggtgat 125276 Query: 874 gttcccgccgg 884 ||||||||||| Sbjct: 125275 gttcccgccgg 125265 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 341 bits (172), Expect = 5e-90 Identities = 251/276 (90%), Gaps = 1/276 (0%) Strand = Plus / Minus Query: 493 caggttgtttttgctggggctggacaagttcggcaagggcgactggcggagcatctcgcg 552 |||| |||| ||||||||||||||||||||||||||||| |||| || ||||||||||| Sbjct: 16213023 caggctgttcttgctggggctggacaagttcggcaagggagacttgcacagcatctcgcg 16212964 Query: 553 caacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcat 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16212963 caacttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcat 16212904 Query: 613 ccgcctccactccatgaaccgggaccggcgccgctccagcattcacgacatcaccagcgt 672 |||||| ||||||||||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 16212903 acgcctcaactccatgaaccgcgatcgtcgccgctccagcatccacgacatcaccagcgt 16212844 Query: 673 caccgcgggggaagtcgccgcgcagcagggcccgatcaccggccaggccacgggcagccc 732 |||||| || || || |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 16212843 caccgccggcgacgttgccgcgcagcagggcccgatcaccggccaggcca-aggcagccc 16212785 Query: 733 cgccgcggcgctggggccgggggccatgaagcaccc 768 || |||||||| ||||| || |||||||||||| Sbjct: 16212784 tgcggcggcgctcgggccacagggcatgaagcaccc 16212749 Score = 117 bits (59), Expect = 1e-22 Identities = 65/67 (97%) Strand = Plus / Minus Query: 431 aagagctgctccaaggcagagcaggagaggcgcaagggcatcccatggacagaggaagag 490 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 16213238 aagagctgctccaaggcggagcaggagaggcgcaagggcatcccatggacggaggaagag 16213179 Query: 491 cacaggt 497 ||||||| Sbjct: 16213178 cacaggt 16213172 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 814 gcccatgggccaccccgtcccgggacacatggtgtccgccgccgtcggcacgccggtcat 873 ||||||||||||||||||| | || ||||||||| ||||||||||||||||||||| || Sbjct: 16212715 gcccatgggccaccccgtcgccggccacatggtgctcgccgccgtcggcacgccggtgat 16212656 Query: 874 gttcccgccgg 884 ||||||||||| Sbjct: 16212655 gttcccgccgg 16212645