BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem127p21 (906 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock prot... 256 1e-64 dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock doma... 224 5e-55 dbj|AK243227.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 222 2e-54 ref|NM_001067449.1| Oryza sativa (japonica cultivar-group) Os08g... 222 2e-54 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 222 2e-54 >dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 256 bits (129), Expect = 1e-64 Identities = 225/257 (87%) Strand = Plus / Plus Query: 86 cggcggggcgagatgtcggagagggtgaaggggacggtgaagtggttcaacaccaccaag 145 |||||| || ||||| ||||||||| ||||| || ||||||||||||||| ||||||| Sbjct: 50 cggcggcgcaagatgggggagagggtcaagggaaccgtgaagtggttcaacgtcaccaag 109 Query: 146 ggctacggcttcatctcccccgacgacggcagcgaggacctcttcgtgcaccagtccgcc 205 || | ||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct: 110 gggttcggcttcatctccccggaggacggcagcgaggacctcttcgtccaccagtccgcc 169 Query: 206 atcaagtccgacggctaccgcagcctcaacgagggcgacaccgtcgagttcgtcgtctct 265 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 170 atcaagtccgacggctaccgcagcctcaacgagaacgacaccgtcgagttcgaggtcatc 229 Query: 266 tccggtgacgacggccgcaccaaagccctcgacgtcaccgccccaggtggtgccgcgctc 325 |||| |||||||| |||||||| ||| |||||||||||| ||||| || | |||||| Sbjct: 230 accggcgacgacggtcgcaccaaggcctccgacgtcaccgcaccaggaggaggagcgctc 289 Query: 326 tccggcggctcccgccc 342 ||||||||||||||||| Sbjct: 290 tccggcggctcccgccc 306 Score = 121 bits (61), Expect = 5e-24 Identities = 177/215 (82%), Gaps = 3/215 (1%) Strand = Plus / Plus Query: 420 gcggctacggcggcggcggcggcggctacggaggtggtggcggaggcggccgtgggtgct 479 |||| |||||||| ||||| ||||||||||| ||||||||| ||||||||||| |||| Sbjct: 402 gcggttacggcggtggcggtggcggctacgg---tggtggcggcggcggccgtggatgct 458 Query: 480 acaagtgcggcgaggagggtcacatggcgagggactgcagccaaggaggcggcggcggcg 539 ||||||||||||||||||| ||||| | ||||||||| ||| || |||||||| |||| Sbjct: 459 acaagtgcggcgaggagggccacatctccagggactgcccccagggcggcggcggtggcg 518 Query: 540 gaggctaccgcggcggcggtggcggtggcggtggcggtggcggccgtgggtgctactcct 599 | || ||| |||| || || || || || ||||| |||||||| | ||||||| | Sbjct: 519 gcggatacggcggtggtggctatggaggaggcggcggcggcggccgcgagtgctacaagt 578 Query: 600 gcggcgaggagggccacatggctagggactgcccc 634 ||||||||||||||||||| | |||||||||||| Sbjct: 579 gcggcgaggagggccacatctccagggactgcccc 613 >dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3, complete cds Length = 1025 Score = 224 bits (113), Expect = 5e-55 Identities = 221/257 (85%) Strand = Plus / Plus Query: 86 cggcggggcgagatgtcggagagggtgaaggggacggtgaagtggttcaacaccaccaag 145 |||||| || ||||| ||||||||| ||||| || ||||||||||||||| ||||||| Sbjct: 32 cggcggcgcaagatgggggagagggtcaagggaaccgtgaagtggttcaacgtcaccaag 91 Query: 146 ggctacggcttcatctcccccgacgacggcagcgaggacctcttcgtgcaccagtccgcc 205 || | ||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||| Sbjct: 92 gggttcggcttcatctccccggacgacggcggcgaggaccttttcgtccaccagtccgcc 151 Query: 206 atcaagtccgacggctaccgcagcctcaacgagggcgacaccgtcgagttcgtcgtctct 265 ||||||||||||||||||||||||||||||||| |||| |||||||||||| | Sbjct: 152 atcaagtccgacggctaccgcagcctcaacgagaacgacgccgtcgagttcgagataatc 211 Query: 266 tccggtgacgacggccgcaccaaagccctcgacgtcaccgccccaggtggtgccgcgctc 325 |||| |||||||| |||||||| ||| |||||||||||| ||||| || | |||||| Sbjct: 212 accggcgacgacggacgcaccaaggcctccgacgtcaccgcaccaggaggaggggcgctc 271 Query: 326 tccggcggctcccgccc 342 ||||||||||||||||| Sbjct: 272 tccggcggctcccgccc 288 Score = 137 bits (69), Expect = 9e-29 Identities = 149/175 (85%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 433 cggcggcggcggctacggaggtggtggcggaggcggccgtgggtgctacaagtgcggcga 492 |||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 526 cggcggtggtggctacggaggtggtggcggcggcggccgtgagtgctacaagtgcggcga 585 Query: 493 ggagggtcacatggcgagggactgcagccaaggaggcggcggcggcggaggctaccgcgg 552 |||||| ||||| | ||||||||| ||| |||||||||||||| |||||| | || Sbjct: 586 ggagggccacatctccagggactgccccca---gggcggcggcggcggcggctacggagg 642 Query: 553 cggcggtggcggtggcggtggcggtggcggccgtgggtgctactcctgcggcgag 607 ||| || ||| ||||||||||||| ||||| | || |||| ||||||||||||| Sbjct: 643 cggtggcggccgtggcggtggcggcggcggtggcggctgcttctcctgcggcgag 697 Score = 123 bits (62), Expect = 1e-24 Identities = 164/198 (82%) Strand = Plus / Plus Query: 437 ggcggcggctacggaggtggtggcggaggcggccgtgggtgctacaagtgcggcgaggag 496 ||||| ||||| ||||| || || || ||||||||||||||||||||||||||||| || Sbjct: 416 ggcggtggctatggaggcggcggtggcggcggccgtgggtgctacaagtgcggcgaagat 475 Query: 497 ggtcacatggcgagggactgcagccaaggaggcggcggcggcggaggctaccgcggcggc 556 || ||||| | ||||||||| ||| || ||||| |||||||| |||||| |||| || Sbjct: 476 ggccacatctccagggactgcccccagggcggcggtggcggcggcggctacggcggtggt 535 Query: 557 ggtggcggtggcggtggcggtggcggccgtgggtgctactcctgcggcgaggagggccac 616 || ||| || |||||||| |||||||||| ||||||| |||||||||||||||||| Sbjct: 536 ggctacggaggtggtggcggcggcggccgtgagtgctacaagtgcggcgaggagggccac 595 Query: 617 atggctagggactgcccc 634 || | |||||||||||| Sbjct: 596 atctccagggactgcccc 613 >dbj|AK243227.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100044F18, full insert sequence Length = 2769 Score = 222 bits (112), Expect = 2e-54 Identities = 214/248 (86%) Strand = Plus / Plus Query: 100 gtcggagagggtgaaggggacggtgaagtggttcaacaccaccaagggctacggcttcat 159 |||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||| Sbjct: 95 gtcggagagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcat 154 Query: 160 ctcccccgacgacggcagcgaggacctcttcgtgcaccagtccgccatcaagtccgacgg 219 | |||||||||||||| ||||||| |||||||| ||||| ||| | ||||||||||||| Sbjct: 155 cacccccgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacgg 214 Query: 220 ctaccgcagcctcaacgagggcgacaccgtcgagttcgtcgtctcttccggtgacgacgg 279 |||||||||||||||||| |||||| |||||||||| |||| ||||| ||||||| Sbjct: 215 ctaccgcagcctcaacgacggcgacgtcgtcgagttctccgtcggatccggcaacgacgg 274 Query: 280 ccgcaccaaagccctcgacgtcaccgccccaggtggtgccgcgctctccggcggctcccg 339 ||||||||| ||| | ||||||||||| || || || | |||||| ||||||| ||||| Sbjct: 275 ccgcaccaaggccgtggacgtcaccgcgccggggggcggggcgctcaccggcggatcccg 334 Query: 340 ccccagcg 347 ||||||| Sbjct: 335 tcccagcg 342 Score = 109 bits (55), Expect = 2e-20 Identities = 115/135 (85%) Strand = Plus / Plus Query: 413 ggcgaccgcggctacggcggcggcggcggcggctacggaggtggtggcggaggcggccgt 472 ||||||||||||||||| ||||||||||| | ||| || || ||||||||| |||| Sbjct: 435 ggcgaccgcggctacggaggcggcggcgggtacggcggcggcggcggcggaggcagccgc 494 Query: 473 gggtgctacaagtgcggcgaggagggtcacatggcgagggactgcagccaaggaggcggc 532 | |||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| ||| Sbjct: 495 gcgtgctacaagtgcggcgaggagggccacatggccagggactgctcccagggaggaggc 554 Query: 533 ggcggcggaggctac 547 ||||| || |||||| Sbjct: 555 ggcggtggtggctac 569 >ref|NM_001067449.1| Oryza sativa (japonica cultivar-group) Os08g0129200 (Os08g0129200) mRNA, complete cds Length = 982 Score = 222 bits (112), Expect = 2e-54 Identities = 214/248 (86%) Strand = Plus / Plus Query: 100 gtcggagagggtgaaggggacggtgaagtggttcaacaccaccaagggctacggcttcat 159 |||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||| Sbjct: 94 gtcggagagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcat 153 Query: 160 ctcccccgacgacggcagcgaggacctcttcgtgcaccagtccgccatcaagtccgacgg 219 | |||||||||||||| ||||||| |||||||| ||||| ||| | ||||||||||||| Sbjct: 154 cacccccgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacgg 213 Query: 220 ctaccgcagcctcaacgagggcgacaccgtcgagttcgtcgtctcttccggtgacgacgg 279 |||||||||||||||||| |||||| |||||||||| |||| ||||| ||||||| Sbjct: 214 ctaccgcagcctcaacgacggcgacgtcgtcgagttctccgtcggatccggcaacgacgg 273 Query: 280 ccgcaccaaagccctcgacgtcaccgccccaggtggtgccgcgctctccggcggctcccg 339 ||||||||| ||| | ||||||||||| || || || | |||||| ||||||| ||||| Sbjct: 274 ccgcaccaaggccgtggacgtcaccgcgccggggggcggggcgctcaccggcggatcccg 333 Query: 340 ccccagcg 347 ||||||| Sbjct: 334 tcccagcg 341 Score = 109 bits (55), Expect = 2e-20 Identities = 115/135 (85%) Strand = Plus / Plus Query: 413 ggcgaccgcggctacggcggcggcggcggcggctacggaggtggtggcggaggcggccgt 472 ||||||||||||||||| ||||||||||| | ||| || || ||||||||| |||| Sbjct: 434 ggcgaccgcggctacggaggcggcggcgggtacggcggcggcggcggcggaggcagccgc 493 Query: 473 gggtgctacaagtgcggcgaggagggtcacatggcgagggactgcagccaaggaggcggc 532 | |||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| ||| Sbjct: 494 gcgtgctacaagtgcggcgaggagggccacatggccagggactgctcccagggaggaggc 553 Query: 533 ggcggcggaggctac 547 ||||| || |||||| Sbjct: 554 ggcggtggtggctac 568 >dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 222 bits (112), Expect = 2e-54 Identities = 214/248 (86%) Strand = Plus / Minus Query: 100 gtcggagagggtgaaggggacggtgaagtggttcaacaccaccaagggctacggcttcat 159 |||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||| Sbjct: 1639566 gtcggagagggtgaaggggacggtgaagtggttcgacgccaccaaggggttcggcttcat 1639507 Query: 160 ctcccccgacgacggcagcgaggacctcttcgtgcaccagtccgccatcaagtccgacgg 219 | |||||||||||||| ||||||| |||||||| ||||| ||| | ||||||||||||| Sbjct: 1639506 cacccccgacgacggcggcgaggatctcttcgtccaccaatcctcgctcaagtccgacgg 1639447 Query: 220 ctaccgcagcctcaacgagggcgacaccgtcgagttcgtcgtctcttccggtgacgacgg 279 |||||||||||||||||| |||||| |||||||||| |||| ||||| ||||||| Sbjct: 1639446 ctaccgcagcctcaacgacggcgacgtcgtcgagttctccgtcggatccggcaacgacgg 1639387 Query: 280 ccgcaccaaagccctcgacgtcaccgccccaggtggtgccgcgctctccggcggctcccg 339 ||||||||| ||| | ||||||||||| || || || | |||||| ||||||| ||||| Sbjct: 1639386 ccgcaccaaggccgtggacgtcaccgcgccggggggcggggcgctcaccggcggatcccg 1639327 Query: 340 ccccagcg 347 ||||||| Sbjct: 1639326 tcccagcg 1639319 Score = 109 bits (55), Expect = 2e-20 Identities = 115/135 (85%) Strand = Plus / Minus Query: 413 ggcgaccgcggctacggcggcggcggcggcggctacggaggtggtggcggaggcggccgt 472 ||||||||||||||||| ||||||||||| | ||| || || ||||||||| |||| Sbjct: 1639226 ggcgaccgcggctacggaggcggcggcgggtacggcggcggcggcggcggaggcagccgc 1639167 Query: 473 gggtgctacaagtgcggcgaggagggtcacatggcgagggactgcagccaaggaggcggc 532 | |||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| ||| Sbjct: 1639166 gcgtgctacaagtgcggcgaggagggccacatggccagggactgctcccagggaggaggc 1639107 Query: 533 ggcggcggaggctac 547 ||||| || |||||| Sbjct: 1639106 ggcggtggtggctac 1639092